Gchil3621.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil3621.t1
Unique NameGchil3621.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length175
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00025222_piloncontigtig00025222_pilon:232783..233552 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil3621Gchil3621Gracilaria chilensis NLEC103_M9 malegenetig00025222_pilon 232783..233552 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3621.t1Gchil3621.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00025222_pilon 232783..233552 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3621.t1.stop1Gchil3621.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00025222_pilon 232783..232785 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3621.t1.CDS1Gchil3621.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00025222_pilon 232783..233029 -
Gchil3621.t1.CDS2Gchil3621.t1.CDS2Gracilaria chilensis NLEC103_M9 maleCDStig00025222_pilon 233110..233208 -
Gchil3621.t1.CDS3Gchil3621.t1.CDS3Gracilaria chilensis NLEC103_M9 maleCDStig00025222_pilon 233283..233323 -
Gchil3621.t1.CDS4Gchil3621.t1.CDS4Gracilaria chilensis NLEC103_M9 maleCDStig00025222_pilon 233415..233552 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3621.t1.exon1Gchil3621.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00025222_pilon 232783..233029 -
Gchil3621.t1.exon2Gchil3621.t1.exon2Gracilaria chilensis NLEC103_M9 maleexontig00025222_pilon 233110..233208 -
Gchil3621.t1.exon3Gchil3621.t1.exon3Gracilaria chilensis NLEC103_M9 maleexontig00025222_pilon 233283..233323 -
Gchil3621.t1.exon4Gchil3621.t1.exon4Gracilaria chilensis NLEC103_M9 maleexontig00025222_pilon 233415..233552 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3621.t1.intron1Gchil3621.t1.intron1Gracilaria chilensis NLEC103_M9 maleintrontig00025222_pilon 233030..233109 -
Gchil3621.t1.intron2Gchil3621.t1.intron2Gracilaria chilensis NLEC103_M9 maleintrontig00025222_pilon 233209..233282 -
Gchil3621.t1.intron3Gchil3621.t1.intron3Gracilaria chilensis NLEC103_M9 maleintrontig00025222_pilon 233324..233414 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3621.t1.start1Gchil3621.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00025222_pilon 233550..233552 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil3621.t1 ID=Gchil3621.t1|Name=Gchil3621.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=175bp
MEAYFESVPVQRAAAAVASPPEPQKMKTVGAGVETERAGVETVLGAGIDR
FGKANQAPLYHAEGVESDTCGIDPDSIRDNGAMGGDRAVSRKRLNYPGGG
AAIAAAVPPGVSPGPGEFGKPLKRGFGPSGGSTPTMTCSGGRGSASVRGR
KTGIRGRGIFKTLLLSVKKSKSAK*
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spliced messenger RNA

>Gchil3621.t1 ID=Gchil3621.t1|Name=Gchil3621.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=525bp|location=Sequence derived from alignment at tig00025222_pilon:232783..233552- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGAAGCCTACTTTGAATCCGTTCCGGTGCAACGAGCCGCTGCGGCAGT
TGCCTCCCCACCCGAACCCCAGAAGATGAAGACCGTTGGAGCAGGTGTTG
AGACTGAGAGAGCCGGTGTGGAGACCGTGCTGGGAGCGGGAATTGACCGT
TTCGGCAAGGCGAACCAAGCTCCCCTCTACCACGCGGAAGGTGTTGAATC
AGATACATGCGGTATAGACCCAGACAGTATTCGGGATAATGGAGCTATGG
GAGGCGATCGTGCGGTTTCCCGAAAGCGGTTGAATTATCCTGGCGGCGGG
GCAGCCATTGCGGCAGCAGTTCCGCCCGGTGTATCGCCCGGCCCTGGTGA
GTTTGGAAAGCCGTTAAAGAGGGGTTTTGGTCCGTCTGGTGGGAGTACGC
CTACCATGACGTGCAGTGGCGGACGTGGTTCGGCCTCGGTTCGTGGCCGC
AAGACTGGTATCCGGGGCCGTGGTATCTTCAAGACTTTGCTGCTGTCAGT
GAAGAAATCCAAGTCGGCTAAGTAA
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protein sequence of Gchil3621.t1

>Gchil3621.t1 ID=Gchil3621.t1|Name=Gchil3621.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=175bp
MEAYFESVPVQRAAAAVASPPEPQKMKTVGAGVETERAGVETVLGAGIDR
FGKANQAPLYHAEGVESDTCGIDPDSIRDNGAMGGDRAVSRKRLNYPGGG
AAIAAAVPPGVSPGPGEFGKPLKRGFGPSGGSTPTMTCSGGRGSASVRGR
KTGIRGRGIFKTLLLSVKKSKSAK*
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mRNA from alignment at tig00025222_pilon:232783..233552-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil3621.t1 ID=Gchil3621.t1|Name=Gchil3621.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=770bp|location=Sequence derived from alignment at tig00025222_pilon:232783..233552- (Gracilaria chilensis NLEC103_M9 male)
ATGGAAGCCTACTTTGAATCCGTTCCGGTGCAACGAGCCGCTGCGGCAGT
TGCCTCCCCACCCGAACCCCAGAAGATGAAGACCGTTGGAGCAGGTGTTG
AGACTGAGAGAGCCGGTGTGGAGACCGTGCTGGGAGCGGTCCAGGCTGTC
TACGTACCGATCGGTGAAACCAGCCCTTCCAATATGGTGTATTGACCTGA
TCGGGGTCATACGCAAGCATGCCGTGAAGGGAATTGACCGTTTCGGCAAG
GCGAACCAAGCTCCCCTCTAGTACGTGCCTGCCGTGTCGATAGAGGCTCC
ACCTACGTCATGGACGGCCCCGGGGTTGGTGGATAATTTCGCAGCCACGC
GGAAGGTGTTGAATCAGATACATGCGGTATAGACCCAGACAGTATTCGGG
ATAATGGAGCTATGGGAGGCGATCGTGCGGTTTCCCGAAAGCGGTATGTC
GTTCAATTCCAGCGCGGTGGTGCTTGAGGTAGCGCCTCAACCAAGTGGGG
CACTACCGGATGTGGACATGCAGGTTGAATTATCCTGGCGGCGGGGCAGC
CATTGCGGCAGCAGTTCCGCCCGGTGTATCGCCCGGCCCTGGTGAGTTTG
GAAAGCCGTTAAAGAGGGGTTTTGGTCCGTCTGGTGGGAGTACGCCTACC
ATGACGTGCAGTGGCGGACGTGGTTCGGCCTCGGTTCGTGGCCGCAAGAC
TGGTATCCGGGGCCGTGGTATCTTCAAGACTTTGCTGCTGTCAGTGAAGA
AATCCAAGTCGGCTAAGTAA
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Coding sequence (CDS) from alignment at tig00025222_pilon:232783..233552-

>Gchil3621.t1 ID=Gchil3621.t1|Name=Gchil3621.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=525bp|location=Sequence derived from alignment at tig00025222_pilon:232783..233552- (Gracilaria chilensis NLEC103_M9 male)
ATGGAAGCCTACTTTGAATCCGTTCCGGTGCAACGAGCCGCTGCGGCAGT
TGCCTCCCCACCCGAACCCCAGAAGATGAAGACCGTTGGAGCAGGTGTTG
AGACTGAGAGAGCCGGTGTGGAGACCGTGCTGGGAGCGGGAATTGACCGT
TTCGGCAAGGCGAACCAAGCTCCCCTCTACCACGCGGAAGGTGTTGAATC
AGATACATGCGGTATAGACCCAGACAGTATTCGGGATAATGGAGCTATGG
GAGGCGATCGTGCGGTTTCCCGAAAGCGGTTGAATTATCCTGGCGGCGGG
GCAGCCATTGCGGCAGCAGTTCCGCCCGGTGTATCGCCCGGCCCTGGTGA
GTTTGGAAAGCCGTTAAAGAGGGGTTTTGGTCCGTCTGGTGGGAGTACGC
CTACCATGACGTGCAGTGGCGGACGTGGTTCGGCCTCGGTTCGTGGCCGC
AAGACTGGTATCCGGGGCCGTGGTATCTTCAAGACTTTGCTGCTGTCAGT
GAAGAAATCCAAGTCGGCTAAGTAA
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