Gchil3617.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gchil3617.t1
Unique Name	Gchil3617.t1
Type	mRNA
Organism	Gracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length	669

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00025222_pilon	contig	tig00025222_pilon:116390..118396 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria chilensis NLEC103_M9 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	130081.XP_005709340.1
Preferred name	LACS2
PFAMs	AMP-binding,AMP-binding_C
Max annot lvl	2759\|Eukaryota
KEGG rclass	RC00004,RC00014
KEGG ko	ko:K01897
KEGG TC	4.C.1.1
KEGG Reaction	R01280
KEGG Pathway	ko00061,ko00071,ko01100,ko01212,ko02024,ko03320,ko04146,ko04216,ko04714,ko04920,map00061,map00071,map01100,map01212,map02024,map03320,map04146,map04216,map04714,map04920
KEGG Module	M00086
GOs	GO:0001676,GO:0003674,GO:0003824,GO:0004467,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005777,GO:0005783,GO:0005794,GO:0005886,GO:0005911,GO:0006082,GO:0006629,GO:0006631,GO:0006950,GO:0006952,GO:0007275,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009506,GO:0009605,GO:0009607,GO:0009620,GO:0009653,GO:0009791,GO:0009987,GO:0010015,GO:0010025,GO:0010101,GO:0010102,GO:0010143,GO:0010166,GO:0010311,GO:0012505,GO:0015645,GO:0016020,GO:0016021,GO:0016405,GO:0016874,GO:0016877,GO:0016878,GO:0019752,GO:0022622,GO:0030054,GO:0030100,GO:0031224,GO:0031957,GO:0032501,GO:0032502,GO:0032787,GO:0032879,GO:0042579,GO:0043170,GO:0043207,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043436,GO:0044237,GO:0044238,GO:0044255,GO:0044281,GO:0044424,GO:0044425,GO:0044444,GO:0044464,GO:0045807,GO:0048364,GO:0048518,GO:0048522,GO:0048527,GO:0048528,GO:0048646,GO:0048731,GO:0048856,GO:0050764,GO:0050766,GO:0050789,GO:0050794,GO:0050832,GO:0050896,GO:0051049,GO:0051050,GO:0051128,GO:0051130,GO:0051704,GO:0051707,GO:0055044,GO:0060627,GO:0065007,GO:0071704,GO:0071944,GO:0090696,GO:0090697,GO:0090698,GO:0098542,GO:0099402,GO:1901568,GO:1901570,GO:1901576,GO:1905392,GO:1905393
Evalue	1.14e-161
EggNOG OGs	COG1022@1\|root,KOG1256@2759\|Eukaryota
EC	6.2.1.3
Description	decanoate-CoA ligase activity
COG category	I
BRITE	ko00000,ko00001,ko00002,ko01000,ko01004,ko04147

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gchil3617	Gchil3617	Gracilaria chilensis NLEC103_M9 male	gene	tig00025222_pilon 116390..118396 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil3617.t1.stop1	Gchil3617.t1.stop1	Gracilaria chilensis NLEC103_M9 male	stop_codon	tig00025222_pilon 116390..116392 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil3617.t1.CDS1	Gchil3617.t1.CDS1	Gracilaria chilensis NLEC103_M9 male	CDS	tig00025222_pilon 116390..118396 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil3617.t1.exon1	Gchil3617.t1.exon1	Gracilaria chilensis NLEC103_M9 male	exon	tig00025222_pilon 116390..118396 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil3617.t1.start1	Gchil3617.t1.start1	Gracilaria chilensis NLEC103_M9 male	start_codon	tig00025222_pilon 118394..118396 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil3617.t1	Gchil3617.t1	Gracilaria chilensis NLEC103_M9 male	polypeptide	tig00025222_pilon 116390..118396 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00025222_pilon:116390..118396-
coding sequence from alignment at tig00025222_pilon:116390..118396-

mRNA sequence

>Gchil3617.t1 ID=Gchil3617.t1|Name=Gchil3617.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=669bp
MCALKVDVDEVSVQIGDGNVRTCGWAKDFDATRPFQDASPVNSLHQVLFR
SAEQYPQSPCLGWRENGESPYLWWTYEKTAAYIEVARDALLSLGLSKGDT
VGFYAQNCPQWVMMQYAVMSAGLVVVPIYDTLGPNILEYVSNHSGLKAVV
VSAANFEKLHNVMQAEKCPTVEHVIVTSSKDIIDDAEVNECTKSVQSAMS
IMDLMDKGKEAASSGSVSAPEVTLDDTLVVMYTSGTTGNPKGVDLPHRAV
VASIASAHMFFAKWGYPFRHEDVFLSYLPLSHIFEQQAEAMFLSAGGCVG
FYSGNIKMIMSDLEALQPTIFAGVPRVFARFQQKIEENVEKTSFIQKALF
NWAYSRQLKSEQSGGEVARSGLWDALVFKKVRARILPRCRFAITGSAPMS
AQTNDFLKVCLMCPITQGYGLTETVGGMNCSIPGKSKSGTVGGPLPGVMV
KLRDLADMGYLGTDSPYPRGEVCVKGDIVFRRYVNNAEATAEAFDEEGFF
RTGDVGQWLEDGSLQIIDRAKNLFKLAQGEYVSPEQLEQEYTKAKLVGQM
WVYGNSLHATLLGVVVPDVDAAMAWGERHSLKTLESIAAAPSFKTELLEQ
LGEMRERSGFKKYETVRDVVIEVSELNELGQGFTVEKDLMTPSFKLKRPQ
LKAKYGERLEALYDALGK*

spliced messenger RNA

>Gchil3617.t1 ID=Gchil3617.t1|Name=Gchil3617.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=2007bp|location=Sequence derived from alignment at tig00025222_pilon:116390..118396- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTGTGCGCTAAAGGTGGATGTGGATGAGGTTTCCGTGCAAATTGGAGA
CGGAAACGTTCGCACGTGTGGGTGGGCGAAGGACTTTGATGCTACGCGCC
CGTTCCAGGATGCGTCTCCTGTGAATTCGCTGCACCAAGTGTTGTTCCGA
TCAGCTGAGCAATACCCTCAGTCGCCTTGTCTGGGCTGGCGAGAGAATGG
GGAATCGCCCTATCTGTGGTGGACGTATGAGAAGACTGCGGCGTACATCG
AAGTTGCTCGTGATGCCTTGCTTTCTCTCGGCCTGTCAAAGGGAGATACC
GTGGGCTTCTACGCCCAAAACTGTCCGCAGTGGGTTATGATGCAGTACGC
CGTGATGTCGGCCGGACTCGTTGTGGTTCCGATCTACGATACGTTGGGGC
CGAACATCCTGGAGTATGTGTCAAACCACTCTGGATTGAAGGCGGTTGTT
GTGTCAGCGGCCAATTTTGAGAAGCTTCACAACGTGATGCAGGCTGAGAA
ATGCCCCACAGTCGAGCACGTTATCGTCACCAGCAGCAAAGACATCATCG
ACGACGCCGAGGTGAACGAGTGCACCAAGTCGGTGCAGAGTGCCATGTCC
ATCATGGATCTGATGGACAAGGGAAAGGAAGCCGCCAGCAGCGGTTCGGT
GTCGGCGCCGGAAGTAACGCTGGATGACACGCTGGTGGTGATGTATACTT
CTGGAACCACTGGAAATCCGAAAGGCGTAGACCTGCCTCACCGTGCGGTG
GTGGCATCCATCGCCTCGGCCCACATGTTCTTCGCCAAGTGGGGATATCC
TTTCCGCCACGAGGACGTGTTTCTGAGCTATCTCCCTCTGTCGCACATCT
TTGAGCAGCAGGCTGAGGCGATGTTTCTGAGCGCGGGCGGCTGCGTAGGG
TTTTACTCTGGCAACATCAAGATGATCATGTCGGACTTAGAAGCTTTGCA
GCCGACGATTTTCGCCGGTGTACCGCGTGTGTTTGCTCGCTTCCAGCAAA
AAATTGAGGAGAATGTGGAGAAGACGTCTTTCATCCAGAAGGCGTTGTTT
AACTGGGCGTACTCACGACAGCTCAAGTCGGAGCAGAGCGGCGGGGAGGT
GGCGCGTTCCGGGTTGTGGGACGCACTTGTGTTCAAGAAGGTACGCGCAA
GGATTCTGCCACGGTGTCGCTTTGCAATTACCGGCTCGGCACCCATGTCG
GCTCAGACGAATGATTTCCTCAAAGTGTGCTTGATGTGCCCCATCACGCA
GGGGTACGGTCTGACGGAAACGGTGGGCGGGATGAATTGTTCGATTCCCG
GAAAGTCCAAGTCGGGGACGGTCGGGGGACCGCTGCCCGGGGTGATGGTA
AAGCTGCGAGACCTGGCGGACATGGGGTACCTCGGGACGGACTCCCCGTA
CCCGCGCGGTGAGGTGTGCGTGAAGGGGGACATTGTGTTCAGGAGGTACG
TGAATAACGCGGAGGCGACGGCGGAGGCGTTCGACGAGGAGGGATTCTTC
CGGACCGGGGACGTGGGACAGTGGCTGGAGGACGGGAGCCTGCAGATCAT
CGACCGAGCTAAGAACCTGTTCAAACTGGCGCAGGGCGAGTACGTATCAC
CGGAGCAGCTGGAACAGGAGTATACAAAGGCCAAGCTGGTGGGGCAGATG
TGGGTGTACGGAAACTCGCTGCACGCAACGCTGCTGGGGGTGGTGGTGCC
GGACGTTGATGCGGCGATGGCGTGGGGCGAGCGTCACAGCCTTAAGACGT
TGGAGAGCATTGCGGCGGCACCGAGCTTCAAGACGGAACTGTTGGAACAG
CTGGGGGAGATGAGAGAGAGGAGTGGGTTCAAGAAGTATGAAACGGTGAG
AGACGTTGTGATCGAGGTGAGCGAGCTCAACGAGCTGGGACAGGGCTTCA
CGGTGGAGAAGGACCTGATGACGCCCAGCTTCAAGCTGAAGCGGCCGCAG
CTCAAGGCCAAGTACGGCGAGCGGCTGGAGGCACTGTACGACGCGCTGGG
CAAGTAA

protein sequence of Gchil3617.t1

>Gchil3617.t1 ID=Gchil3617.t1|Name=Gchil3617.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=669bp
MCALKVDVDEVSVQIGDGNVRTCGWAKDFDATRPFQDASPVNSLHQVLFR
SAEQYPQSPCLGWRENGESPYLWWTYEKTAAYIEVARDALLSLGLSKGDT
VGFYAQNCPQWVMMQYAVMSAGLVVVPIYDTLGPNILEYVSNHSGLKAVV
VSAANFEKLHNVMQAEKCPTVEHVIVTSSKDIIDDAEVNECTKSVQSAMS
IMDLMDKGKEAASSGSVSAPEVTLDDTLVVMYTSGTTGNPKGVDLPHRAV
VASIASAHMFFAKWGYPFRHEDVFLSYLPLSHIFEQQAEAMFLSAGGCVG
FYSGNIKMIMSDLEALQPTIFAGVPRVFARFQQKIEENVEKTSFIQKALF
NWAYSRQLKSEQSGGEVARSGLWDALVFKKVRARILPRCRFAITGSAPMS
AQTNDFLKVCLMCPITQGYGLTETVGGMNCSIPGKSKSGTVGGPLPGVMV
KLRDLADMGYLGTDSPYPRGEVCVKGDIVFRRYVNNAEATAEAFDEEGFF
RTGDVGQWLEDGSLQIIDRAKNLFKLAQGEYVSPEQLEQEYTKAKLVGQM
WVYGNSLHATLLGVVVPDVDAAMAWGERHSLKTLESIAAAPSFKTELLEQ
LGEMRERSGFKKYETVRDVVIEVSELNELGQGFTVEKDLMTPSFKLKRPQ
LKAKYGERLEALYDALGK*

mRNA from alignment at tig00025222_pilon:116390..118396-

Legend: polypeptideCDSexonstart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gchil3617.t1 ID=Gchil3617.t1|Name=Gchil3617.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=2007bp|location=Sequence derived from alignment at tig00025222_pilon:116390..118396- (Gracilaria chilensis NLEC103_M9 male)
ATGTGTGCGCTAAAGGTGGATGTGGATGAGGTTTCCGTGCAAATTGGAGA
CGGAAACGTTCGCACGTGTGGGTGGGCGAAGGACTTTGATGCTACGCGCC
CGTTCCAGGATGCGTCTCCTGTGAATTCGCTGCACCAAGTGTTGTTCCGA
TCAGCTGAGCAATACCCTCAGTCGCCTTGTCTGGGCTGGCGAGAGAATGG
GGAATCGCCCTATCTGTGGTGGACGTATGAGAAGACTGCGGCGTACATCG
AAGTTGCTCGTGATGCCTTGCTTTCTCTCGGCCTGTCAAAGGGAGATACC
GTGGGCTTCTACGCCCAAAACTGTCCGCAGTGGGTTATGATGCAGTACGC
CGTGATGTCGGCCGGACTCGTTGTGGTTCCGATCTACGATACGTTGGGGC
CGAACATCCTGGAGTATGTGTCAAACCACTCTGGATTGAAGGCGGTTGTT
GTGTCAGCGGCCAATTTTGAGAAGCTTCACAACGTGATGCAGGCTGAGAA
ATGCCCCACAGTCGAGCACGTTATCGTCACCAGCAGCAAAGACATCATCG
ACGACGCCGAGGTGAACGAGTGCACCAAGTCGGTGCAGAGTGCCATGTCC
ATCATGGATCTGATGGACAAGGGAAAGGAAGCCGCCAGCAGCGGTTCGGT
GTCGGCGCCGGAAGTAACGCTGGATGACACGCTGGTGGTGATGTATACTT
CTGGAACCACTGGAAATCCGAAAGGCGTAGACCTGCCTCACCGTGCGGTG
GTGGCATCCATCGCCTCGGCCCACATGTTCTTCGCCAAGTGGGGATATCC
TTTCCGCCACGAGGACGTGTTTCTGAGCTATCTCCCTCTGTCGCACATCT
TTGAGCAGCAGGCTGAGGCGATGTTTCTGAGCGCGGGCGGCTGCGTAGGG
TTTTACTCTGGCAACATCAAGATGATCATGTCGGACTTAGAAGCTTTGCA
GCCGACGATTTTCGCCGGTGTACCGCGTGTGTTTGCTCGCTTCCAGCAAA
AAATTGAGGAGAATGTGGAGAAGACGTCTTTCATCCAGAAGGCGTTGTTT
AACTGGGCGTACTCACGACAGCTCAAGTCGGAGCAGAGCGGCGGGGAGGT
GGCGCGTTCCGGGTTGTGGGACGCACTTGTGTTCAAGAAGGTACGCGCAA
GGATTCTGCCACGGTGTCGCTTTGCAATTACCGGCTCGGCACCCATGTCG
GCTCAGACGAATGATTTCCTCAAAGTGTGCTTGATGTGCCCCATCACGCA
GGGGTACGGTCTGACGGAAACGGTGGGCGGGATGAATTGTTCGATTCCCG
GAAAGTCCAAGTCGGGGACGGTCGGGGGACCGCTGCCCGGGGTGATGGTA
AAGCTGCGAGACCTGGCGGACATGGGGTACCTCGGGACGGACTCCCCGTA
CCCGCGCGGTGAGGTGTGCGTGAAGGGGGACATTGTGTTCAGGAGGTACG
TGAATAACGCGGAGGCGACGGCGGAGGCGTTCGACGAGGAGGGATTCTTC
CGGACCGGGGACGTGGGACAGTGGCTGGAGGACGGGAGCCTGCAGATCAT
CGACCGAGCTAAGAACCTGTTCAAACTGGCGCAGGGCGAGTACGTATCAC
CGGAGCAGCTGGAACAGGAGTATACAAAGGCCAAGCTGGTGGGGCAGATG
TGGGTGTACGGAAACTCGCTGCACGCAACGCTGCTGGGGGTGGTGGTGCC
GGACGTTGATGCGGCGATGGCGTGGGGCGAGCGTCACAGCCTTAAGACGT
TGGAGAGCATTGCGGCGGCACCGAGCTTCAAGACGGAACTGTTGGAACAG
CTGGGGGAGATGAGAGAGAGGAGTGGGTTCAAGAAGTATGAAACGGTGAG
AGACGTTGTGATCGAGGTGAGCGAGCTCAACGAGCTGGGACAGGGCTTCA
CGGTGGAGAAGGACCTGATGACGCCCAGCTTCAAGCTGAAGCGGCCGCAG
CTCAAGGCCAAGTACGGCGAGCGGCTGGAGGCACTGTACGACGCGCTGGG
CAAGTAA

Coding sequence (CDS) from alignment at tig00025222_pilon:116390..118396-

>Gchil3617.t1 ID=Gchil3617.t1|Name=Gchil3617.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=2007bp|location=Sequence derived from alignment at tig00025222_pilon:116390..118396- (Gracilaria chilensis NLEC103_M9 male)
ATGTGTGCGCTAAAGGTGGATGTGGATGAGGTTTCCGTGCAAATTGGAGA
CGGAAACGTTCGCACGTGTGGGTGGGCGAAGGACTTTGATGCTACGCGCC
CGTTCCAGGATGCGTCTCCTGTGAATTCGCTGCACCAAGTGTTGTTCCGA
TCAGCTGAGCAATACCCTCAGTCGCCTTGTCTGGGCTGGCGAGAGAATGG
GGAATCGCCCTATCTGTGGTGGACGTATGAGAAGACTGCGGCGTACATCG
AAGTTGCTCGTGATGCCTTGCTTTCTCTCGGCCTGTCAAAGGGAGATACC
GTGGGCTTCTACGCCCAAAACTGTCCGCAGTGGGTTATGATGCAGTACGC
CGTGATGTCGGCCGGACTCGTTGTGGTTCCGATCTACGATACGTTGGGGC
CGAACATCCTGGAGTATGTGTCAAACCACTCTGGATTGAAGGCGGTTGTT
GTGTCAGCGGCCAATTTTGAGAAGCTTCACAACGTGATGCAGGCTGAGAA
ATGCCCCACAGTCGAGCACGTTATCGTCACCAGCAGCAAAGACATCATCG
ACGACGCCGAGGTGAACGAGTGCACCAAGTCGGTGCAGAGTGCCATGTCC
ATCATGGATCTGATGGACAAGGGAAAGGAAGCCGCCAGCAGCGGTTCGGT
GTCGGCGCCGGAAGTAACGCTGGATGACACGCTGGTGGTGATGTATACTT
CTGGAACCACTGGAAATCCGAAAGGCGTAGACCTGCCTCACCGTGCGGTG
GTGGCATCCATCGCCTCGGCCCACATGTTCTTCGCCAAGTGGGGATATCC
TTTCCGCCACGAGGACGTGTTTCTGAGCTATCTCCCTCTGTCGCACATCT
TTGAGCAGCAGGCTGAGGCGATGTTTCTGAGCGCGGGCGGCTGCGTAGGG
TTTTACTCTGGCAACATCAAGATGATCATGTCGGACTTAGAAGCTTTGCA
GCCGACGATTTTCGCCGGTGTACCGCGTGTGTTTGCTCGCTTCCAGCAAA
AAATTGAGGAGAATGTGGAGAAGACGTCTTTCATCCAGAAGGCGTTGTTT
AACTGGGCGTACTCACGACAGCTCAAGTCGGAGCAGAGCGGCGGGGAGGT
GGCGCGTTCCGGGTTGTGGGACGCACTTGTGTTCAAGAAGGTACGCGCAA
GGATTCTGCCACGGTGTCGCTTTGCAATTACCGGCTCGGCACCCATGTCG
GCTCAGACGAATGATTTCCTCAAAGTGTGCTTGATGTGCCCCATCACGCA
GGGGTACGGTCTGACGGAAACGGTGGGCGGGATGAATTGTTCGATTCCCG
GAAAGTCCAAGTCGGGGACGGTCGGGGGACCGCTGCCCGGGGTGATGGTA
AAGCTGCGAGACCTGGCGGACATGGGGTACCTCGGGACGGACTCCCCGTA
CCCGCGCGGTGAGGTGTGCGTGAAGGGGGACATTGTGTTCAGGAGGTACG
TGAATAACGCGGAGGCGACGGCGGAGGCGTTCGACGAGGAGGGATTCTTC
CGGACCGGGGACGTGGGACAGTGGCTGGAGGACGGGAGCCTGCAGATCAT
CGACCGAGCTAAGAACCTGTTCAAACTGGCGCAGGGCGAGTACGTATCAC
CGGAGCAGCTGGAACAGGAGTATACAAAGGCCAAGCTGGTGGGGCAGATG
TGGGTGTACGGAAACTCGCTGCACGCAACGCTGCTGGGGGTGGTGGTGCC
GGACGTTGATGCGGCGATGGCGTGGGGCGAGCGTCACAGCCTTAAGACGT
TGGAGAGCATTGCGGCGGCACCGAGCTTCAAGACGGAACTGTTGGAACAG
CTGGGGGAGATGAGAGAGAGGAGTGGGTTCAAGAAGTATGAAACGGTGAG
AGACGTTGTGATCGAGGTGAGCGAGCTCAACGAGCTGGGACAGGGCTTCA
CGGTGGAGAAGGACCTGATGACGCCCAGCTTCAAGCTGAAGCGGCCGCAG
CTCAAGGCCAAGTACGGCGAGCGGCTGGAGGCACTGTACGACGCGCTGGG
CAAGTAA