Gchil359.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil359.t1
Unique NameGchil359.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length296
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000212_piloncontigtig00000212_pilon:615249..616713 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog1047171.Mycgr3P75437
Preferred namespf31
PFAMsDnaJ
Max annot lvl4751|Fungi
KEGG koko:K09528
GOsGO:0000375,GO:0000377,GO:0000398,GO:0003674,GO:0005488,GO:0005515,GO:0006139,GO:0006396,GO:0006397,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008380,GO:0009987,GO:0010467,GO:0016070,GO:0016071,GO:0030544,GO:0031072,GO:0034641,GO:0043170,GO:0044237,GO:0044238,GO:0045292,GO:0046483,GO:0071704,GO:0090304,GO:1901360
Evalue1.93e-06
EggNOG OGsKOG1150@1|root,KOG1150@2759|Eukaryota,38PJP@33154|Opisthokonta,3NXU4@4751|Fungi,3QP3R@4890|Ascomycota,201DB@147541|Dothideomycetes,3MFDG@451867|Dothideomycetidae
DescriptionDnaJ molecular chaperone homology domain
COG categoryO
BRITEko00000,ko03041,ko03110
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil359Gchil359Gracilaria chilensis NLEC103_M9 malegenetig00000212_pilon 615249..616713 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil359.t1Gchil359.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00000212_pilon 615249..616713 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil359.t1.stop1Gchil359.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00000212_pilon 615249..615251 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil359.t1.CDS1Gchil359.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00000212_pilon 615249..615270 -
Gchil359.t1.CDS2Gchil359.t1.CDS2Gracilaria chilensis NLEC103_M9 maleCDStig00000212_pilon 615496..615738 -
Gchil359.t1.CDS3Gchil359.t1.CDS3Gracilaria chilensis NLEC103_M9 maleCDStig00000212_pilon 615948..616161 -
Gchil359.t1.CDS4Gchil359.t1.CDS4Gracilaria chilensis NLEC103_M9 maleCDStig00000212_pilon 616305..616713 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil359.t1.exon1Gchil359.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00000212_pilon 615249..615270 -
Gchil359.t1.exon2Gchil359.t1.exon2Gracilaria chilensis NLEC103_M9 maleexontig00000212_pilon 615496..615738 -
Gchil359.t1.exon3Gchil359.t1.exon3Gracilaria chilensis NLEC103_M9 maleexontig00000212_pilon 615948..616161 -
Gchil359.t1.exon4Gchil359.t1.exon4Gracilaria chilensis NLEC103_M9 maleexontig00000212_pilon 616305..616713 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil359.t1.intron1Gchil359.t1.intron1Gracilaria chilensis NLEC103_M9 maleintrontig00000212_pilon 615271..615495 -
Gchil359.t1.intron2Gchil359.t1.intron2Gracilaria chilensis NLEC103_M9 maleintrontig00000212_pilon 615739..615947 -
Gchil359.t1.intron3Gchil359.t1.intron3Gracilaria chilensis NLEC103_M9 maleintrontig00000212_pilon 616162..616304 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil359.t1.start1Gchil359.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00000212_pilon 616711..616713 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil359.t1 ID=Gchil359.t1|Name=Gchil359.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=296bp
MYSTHRRRRAHPSLSETLYISALFRAIWSFAITLSPYAMSSPSSWAYQAL
DLLPSASPADVRLAYKRLSLATHPDKTRNPTSRARFDQVNSAYTFLSDNL
FGRETHTPTVSHVVTDVITVSEMEENDGDLYYSCRCATEIATSLAAILFV
IPITALPRGRPPMFNSVHGFAAQNSPAPHQDIIPPSSLYQHPTRFSFHLR
NLSQLFSTQGPRCSACSPEQRATSIQLLYKVQLVPGCRLGKDVSLKHADP
LGVLNRLLLSQMRIRQSDAAQSCTLAVGHSYNLVLSFLWYFTSFV*
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spliced messenger RNA

>Gchil359.t1 ID=Gchil359.t1|Name=Gchil359.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=888bp|location=Sequence derived from alignment at tig00000212_pilon:615249..616713- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTACAGTACGCACCGTCGGCGTCGGGCTCATCCTTCGCTTTCCGAAAC
TCTATACATCTCTGCTTTGTTCAGAGCGATTTGGTCATTCGCCATCACAT
TGTCGCCTTATGCCATGTCATCGCCCTCTTCATGGGCCTACCAGGCTCTA
GATCTGCTCCCTTCAGCGTCGCCCGCCGACGTCCGCCTGGCCTACAAACG
ACTGTCACTTGCCACTCATCCGGACAAGACTCGGAACCCCACAAGTCGTG
CCCGCTTTGATCAGGTCAACTCTGCCTATACGTTTCTCTCAGATAATCTG
TTCGGTAGAGAAACACACACTCCTACTGTTTCGCATGTCGTCACGGATGT
GATTACCGTGTCCGAAATGGAGGAGAATGATGGCGATCTATATTACTCTT
GTCGATGTGCCACAGAAATCGCAACTTCACTGGCTGCTATACTGTTTGTC
ATACCCATAACTGCTCTCCCACGGGGTCGGCCGCCGATGTTTAATTCAGT
ACACGGTTTTGCCGCACAAAATTCCCCAGCCCCTCACCAAGATATCATTC
CACCATCATCTTTATATCAGCACCCGACTCGGTTTTCATTCCATCTTAGA
AACTTGTCTCAACTTTTCTCAACGCAAGGTCCGCGTTGTTCAGCTTGTTC
CCCAGAGCAACGCGCAACTTCTATCCAACTTCTATACAAGGTCCAGCTTG
TTCCAGGTTGCCGATTGGGAAAAGATGTATCGTTGAAACACGCAGATCCG
CTTGGTGTTTTAAATCGCTTGCTTCTGAGCCAGATGCGAATACGACAATC
GGATGCGGCGCAATCCTGTACGCTCGCCGTTGGTCATTCTTACAATCTCG
TTCTTTCGTTCTTGTGGTATTTTACAAGCTTTGTGTGA
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protein sequence of Gchil359.t1

>Gchil359.t1 ID=Gchil359.t1|Name=Gchil359.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=296bp
MYSTHRRRRAHPSLSETLYISALFRAIWSFAITLSPYAMSSPSSWAYQAL
DLLPSASPADVRLAYKRLSLATHPDKTRNPTSRARFDQVNSAYTFLSDNL
FGRETHTPTVSHVVTDVITVSEMEENDGDLYYSCRCATEIATSLAAILFV
IPITALPRGRPPMFNSVHGFAAQNSPAPHQDIIPPSSLYQHPTRFSFHLR
NLSQLFSTQGPRCSACSPEQRATSIQLLYKVQLVPGCRLGKDVSLKHADP
LGVLNRLLLSQMRIRQSDAAQSCTLAVGHSYNLVLSFLWYFTSFV*
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mRNA from alignment at tig00000212_pilon:615249..616713-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil359.t1 ID=Gchil359.t1|Name=Gchil359.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1465bp|location=Sequence derived from alignment at tig00000212_pilon:615249..616713- (Gracilaria chilensis NLEC103_M9 male)
ATGTACAGTACGCACCGTCGGCGTCGGGCTCATCCTTCGCTTTCCGAAAC
TCTATACATCTCTGCTTTGTTCAGAGCGATTTGGTCATTCGCCATCACAT
TGTCGCCTTATGCCATGTCATCGCCCTCTTCATGGGCCTACCAGGCTCTA
GATCTGCTCCCTTCAGCGTCGCCCGCCGACGTCCGCCTGGCCTACAAACG
ACTGTCACTTGCCACTCATCCGGACAAGACTCGGAACCCCACAAGTCGTG
CCCGCTTTGATCAGGTCAACTCTGCCTATACGTTTCTCTCAGATAATCTG
TTCGGTAGAGAAACACACACTCCTACTGTTTCGCATGTCGTCACGGATGT
GATTACCGTGTCCGAAATGGAGGAGAATGATGGCGATCTATATTACTCTT
GTCGATGTGGTGGGTCCTTTCTTCTCGAACGAGCTCACATGAGCTTCATT
TCGAGCGCTGGAAAAGATGGGCTTCTTGTCTCTTGTGATGGCTGTTCTTT
GGCGGTCCAAATTTGCTCGCAACCTTCTAATCATCCCCCAAAACCTTCGT
AGCCACAGAAATCGCAACTTCACTGGCTGCTATACTGTTTGTCATACCCA
TAACTGCTCTCCCACGGGGTCGGCCGCCGATGTTTAATTCAGTACACGGT
TTTGCCGCACAAAATTCCCCAGCCCCTCACCAAGATATCATTCCACCATC
ATCTTTATATCAGCACCCGACTCGGTTTTCATTCCATCTTAGAAACTTGT
CTCAACTTTTCTCAACGTAAGTTTTATTCTTCATCAACGTGATCTATCGC
CGTTTTCGCAGAAGCAAGGATGATTTTTCTTTAACTTTCGCTGTTACTGA
ACAATCCAATGGGATGAGAACTTCTCGCTTTACCGTTCAGAGTTTCGTTG
CGAAAAGTGCCGTTTAGCCGCCAGGCAGACTACAATCGTGCAGATTCTAA
CACTGTTCCGTCTTTTTTTTGACAGGCAAGGTCCGCGTTGTTCAGCTTGT
TCCCCAGAGCAACGCGCAACTTCTATCCAACTTCTATACAAGGTCCAGCT
TGTTCCAGGTTGCCGATTGGGAAAAGATGTATCGTTGAAACACGCAGATC
CGCTTGGTGTTTTAAATCGCTTGCTTCTGAGCCAGATGCGAATACGACAA
TCGGATGCGGCGCAATCCTGTACGCTCGCCGTTGGTCATTCTTACAATCT
CGTTCTTTCGTTCTTGTGGTAAGGTACTACCATTCTTGTGAAGCTTTTGT
CTACACCGAGTATGTAGATAATGATGACCAAAGCACTTCATCTTAAGCTT
AAGGTTTGTGATGATTTTTGCTTTATTACCTTAACGCTGTTGTTTACCCG
TCTGAGTCACACATACTCTGGTTCATGAAATCTCGCATATCATTGCATTT
TTTTCTAACTTGGAATGACTTGCAATAATTTGAATTGTATCAGGTATTTT
ACAAGCTTTGTGTGA
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Coding sequence (CDS) from alignment at tig00000212_pilon:615249..616713-

>Gchil359.t1 ID=Gchil359.t1|Name=Gchil359.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=888bp|location=Sequence derived from alignment at tig00000212_pilon:615249..616713- (Gracilaria chilensis NLEC103_M9 male)
ATGTACAGTACGCACCGTCGGCGTCGGGCTCATCCTTCGCTTTCCGAAAC
TCTATACATCTCTGCTTTGTTCAGAGCGATTTGGTCATTCGCCATCACAT
TGTCGCCTTATGCCATGTCATCGCCCTCTTCATGGGCCTACCAGGCTCTA
GATCTGCTCCCTTCAGCGTCGCCCGCCGACGTCCGCCTGGCCTACAAACG
ACTGTCACTTGCCACTCATCCGGACAAGACTCGGAACCCCACAAGTCGTG
CCCGCTTTGATCAGGTCAACTCTGCCTATACGTTTCTCTCAGATAATCTG
TTCGGTAGAGAAACACACACTCCTACTGTTTCGCATGTCGTCACGGATGT
GATTACCGTGTCCGAAATGGAGGAGAATGATGGCGATCTATATTACTCTT
GTCGATGTGCCACAGAAATCGCAACTTCACTGGCTGCTATACTGTTTGTC
ATACCCATAACTGCTCTCCCACGGGGTCGGCCGCCGATGTTTAATTCAGT
ACACGGTTTTGCCGCACAAAATTCCCCAGCCCCTCACCAAGATATCATTC
CACCATCATCTTTATATCAGCACCCGACTCGGTTTTCATTCCATCTTAGA
AACTTGTCTCAACTTTTCTCAACGCAAGGTCCGCGTTGTTCAGCTTGTTC
CCCAGAGCAACGCGCAACTTCTATCCAACTTCTATACAAGGTCCAGCTTG
TTCCAGGTTGCCGATTGGGAAAAGATGTATCGTTGAAACACGCAGATCCG
CTTGGTGTTTTAAATCGCTTGCTTCTGAGCCAGATGCGAATACGACAATC
GGATGCGGCGCAATCCTGTACGCTCGCCGTTGGTCATTCTTACAATCTCG
TTCTTTCGTTCTTGTGGTATTTTACAAGCTTTGTGTGA
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