Gchil3588.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil3588.t1
Unique NameGchil3588.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length780
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004378_piloncontigtig00004378_pilon:1692262..1694662 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil3588Gchil3588Gracilaria chilensis NLEC103_M9 malegenetig00004378_pilon 1692262..1694662 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3588.t1Gchil3588.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004378_pilon 1692262..1694662 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3588.t1.start1Gchil3588.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004378_pilon 1692262..1692264 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3588.t1.CDS1Gchil3588.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004378_pilon 1692262..1693370 +
Gchil3588.t1.CDS2Gchil3588.t1.CDS2Gracilaria chilensis NLEC103_M9 maleCDStig00004378_pilon 1693432..1694662 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3588.t1.exon1Gchil3588.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004378_pilon 1692262..1693370 +
Gchil3588.t1.exon2Gchil3588.t1.exon2Gracilaria chilensis NLEC103_M9 maleexontig00004378_pilon 1693432..1694662 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3588.t1.intron1Gchil3588.t1.intron1Gracilaria chilensis NLEC103_M9 maleintrontig00004378_pilon 1693371..1693431 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3588.t1.stop1Gchil3588.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004378_pilon 1694660..1694662 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil3588.t1 ID=Gchil3588.t1|Name=Gchil3588.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=780bp
MGLTLRSQDFTDEDSILILDVLARFVQDADILPMDEARAYIALPYSFMGM
AEDQHNSVRGSLRASKGGVTCWPEAAQYLLRSYATGTENQNATLALRDTK
QKLGETETVYSTRLPKAFPRCGNVYSASERCKMFVDGLDPAIKALVARRR
EEKRRMSYLELVQYAQAEVDSLRARQPTGRRLSKVLHAEVSSPSLSLLNR
GVVGTDHDNVQFTWNDDYSMATTDLPTTSVETSEGDLAFFGGTIVTAAQL
AHVTNAMRTTRPGWGETQPHPRTDVNVRPPFNALSAPICLLCYRLGHIAP
RCMLTLRDMPSVVTQYESVSPIDQARILNWSYLRSKASFGPWTTVIPCPE
IEMSNADQQTKNILPNNGNPHGSLPDGGASSKLRLKTPEASPANSPVTIL
TRNMAKTDIDSEHVAVLRPPWIWFRNPRTPDRILVMAKRSYKIYADLGLS
HQFMVRQLSVLDTGAEINLINSGIIPSTLRNNIFYGPGRDIADAINNPLH
TIGKISLAVRLGTYFVQLDFVVCNSLAAPVIHCCDFCDRFVEAIRPRTRT
GMMDDGSTIPIVRKPLNRATQKKDPLPVVQESFDKDPRSTRLKVAKSITM
PPESQVWVTVTSQHHGLHIVQLLASLYTKHQLALANGLVLIEPDTPLKVL
VANFRKTNQWLTKNQTLDSVLPHPTAIVPTKIPVTDVLAVLEPKEREEDD
DVDTTRVEPEFQYSDTQPTRPKGLEQKALLPGTDDVDPMKELEILDLEHV
PEAHREKLKEMWKGFTRMWDGSLGTIGIT*
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spliced messenger RNA

>Gchil3588.t1 ID=Gchil3588.t1|Name=Gchil3588.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=2340bp|location=Sequence derived from alignment at tig00004378_pilon:1692262..1694662+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
atgggtcttacactgcgttcgcaggatttcactgatgaagattctattct
aatacttgacgttcttgcaagattcgttcaggacgctgacatcctcccaa
tggacgaggcgcgagcttacattgccctaccgtattcctttatgggaatg
gctgaagatcagcacaattcagttcgaggatccttgagagcctcgaaagg
aggagttacctgttggcccgaagccgctcaatatcttttgaggtcatacg
ccactggtaccgagaatcaaaatgcaacactcgctctccgcgatacgaaa
cagaagcttggtgaaaccgaaacagtctattcaactcgattgcctaaggc
gtttccccgttgcggtaacgtgtattccgcctccgagcggtgtaaaatgt
ttgttgatggacttgatcctgccataaaagcgcttgttgcgcgacgccgt
gaagaaaaacggaggatgtcctacttggaactggtacagtacgcccaagc
tgaggtagattcactccgtgcccgacaacctactggacgtcgtctgtcca
aggtacttcacgccgaagtgtcttcaccgtctctttcactcttaaacaga
ggagtcgttggaacggaccacgataacgtccaattcacttggaatgatga
ttattcgatggccactacggacttgccaactacttccgttgaaacctctg
aaggcgatctagccttctttggtggcacaatagttaccgcagctcaactc
gctcatgtgacaaacgcaatgcgtacaacccgtcctggatggggggaaac
acaaccacacccacggacggacgtgaatgttcgcccgccgtttaatgcgt
tgagtgcacctatttgtcttctctgttaccgactcggtcatatcgcgcca
cgttgcatgttgaccttgagagacatgccgtctgttgtcactcagtacga
gtctgtatcgcctatcgatcaagctcggattctgaactggtcgtatctcc
gatctaaagccagttttggaccgtggacaacagtcataccgtgtccggaa
atcgaaatgtcgaacgctgatcagcagaccaagaacatcttacccaacaa
tgggaatccacatgggagtctccctgatggaggagcatcttccaagttga
ggttgaagacgcccgaggcgtcaccagctaactccccggtcacaatcctt
accaggaatatggctaaaactgacattgactcggaacacgtagctgtttt
acgtcctccatggatatggtttaggaatccccgtactccggatagaatcc
ttgtgatggccaagcgtagctacaagatctatgcagaccttggcctgtca
caccagttcatggttagacagttatctgttttggatacaggagccgaaat
aaatttgatcaattctggtattataccgtccacacttcggaataatattt
tctatggtccaggaagggatatcgccgatgcgataaataatccgctccat
acgattggaaaaatatctctcgcagtgcgattgggtacctatttcgttca
attagactttgtagtctgcaactccctcgctgcacccgtgatacattgtt
gtgatttttgtgatcgatttgttgaagcaattcgtcccagaacgagaaca
ggtatgatggatgacggatccacgattcctatcgtaaggaaaccactgaa
tcgggcaacacaaaagaaagatccgttaccagttgtccaggaatcttttg
acaaggacccccgctcaacgcgtctcaaggttgcgaaatcgattacgatg
cccccagaatcacaagtatgggttacagtgacatcccaacatcatgggct
acatattgtgcaacttttggcctctttgtataccaagcatcaactcgctc
tggcaaatggtctggttctaatcgaacccgatactcctttaaaggttctc
gtggccaacttccgtaaaaccaatcaatggttaacgaagaatcaaacact
ggactcagtacttccacacccaaccgctatcgtcccgacgaagataccgg
ttaccgatgttctcgcagtcctcgaacctaaggagagggaggaggatgat
gatgttgacactacacgtgtagagcccgagttccaatattcggatacaca
accgacacgaccgaaagggttggaacagaaggctttgctgcctggtacag
atgatgttgatcctatgaaggagttggaaattttagatctggagcatgtc
ccagaagctcatcgtgagaagttaaaagaaatgtggaagggatttacccg
tatgtgggatggttcccttggaacaataggaatcacgtaa
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protein sequence of Gchil3588.t1

>Gchil3588.t1 ID=Gchil3588.t1|Name=Gchil3588.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=780bp
MGLTLRSQDFTDEDSILILDVLARFVQDADILPMDEARAYIALPYSFMGM
AEDQHNSVRGSLRASKGGVTCWPEAAQYLLRSYATGTENQNATLALRDTK
QKLGETETVYSTRLPKAFPRCGNVYSASERCKMFVDGLDPAIKALVARRR
EEKRRMSYLELVQYAQAEVDSLRARQPTGRRLSKVLHAEVSSPSLSLLNR
GVVGTDHDNVQFTWNDDYSMATTDLPTTSVETSEGDLAFFGGTIVTAAQL
AHVTNAMRTTRPGWGETQPHPRTDVNVRPPFNALSAPICLLCYRLGHIAP
RCMLTLRDMPSVVTQYESVSPIDQARILNWSYLRSKASFGPWTTVIPCPE
IEMSNADQQTKNILPNNGNPHGSLPDGGASSKLRLKTPEASPANSPVTIL
TRNMAKTDIDSEHVAVLRPPWIWFRNPRTPDRILVMAKRSYKIYADLGLS
HQFMVRQLSVLDTGAEINLINSGIIPSTLRNNIFYGPGRDIADAINNPLH
TIGKISLAVRLGTYFVQLDFVVCNSLAAPVIHCCDFCDRFVEAIRPRTRT
GMMDDGSTIPIVRKPLNRATQKKDPLPVVQESFDKDPRSTRLKVAKSITM
PPESQVWVTVTSQHHGLHIVQLLASLYTKHQLALANGLVLIEPDTPLKVL
VANFRKTNQWLTKNQTLDSVLPHPTAIVPTKIPVTDVLAVLEPKEREEDD
DVDTTRVEPEFQYSDTQPTRPKGLEQKALLPGTDDVDPMKELEILDLEHV
PEAHREKLKEMWKGFTRMWDGSLGTIGIT*
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mRNA from alignment at tig00004378_pilon:1692262..1694662+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil3588.t1 ID=Gchil3588.t1|Name=Gchil3588.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=2401bp|location=Sequence derived from alignment at tig00004378_pilon:1692262..1694662+ (Gracilaria chilensis NLEC103_M9 male)
atgggtcttacactgcgttcgcaggatttcactgatgaagattctattct
aatacttgacgttcttgcaagattcgttcaggacgctgacatcctcccaa
tggacgaggcgcgagcttacattgccctaccgtattcctttatgggaatg
gctgaagatcagcacaattcagttcgaggatccttgagagcctcgaaagg
aggagttacctgttggcccgaagccgctcaatatcttttgaggtcatacg
ccactggtaccgagaatcaaaatgcaacactcgctctccgcgatacgaaa
cagaagcttggtgaaaccgaaacagtctattcaactcgattgcctaaggc
gtttccccgttgcggtaacgtgtattccgcctccgagcggtgtaaaatgt
ttgttgatggacttgatcctgccataaaagcgcttgttgcgcgacgccgt
gaagaaaaacggaggatgtcctacttggaactggtacagtacgcccaagc
tgaggtagattcactccgtgcccgacaacctactggacgtcgtctgtcca
aggtacttcacgccgaagtgtcttcaccgtctctttcactcttaaacaga
ggagtcgttggaacggaccacgataacgtccaattcacttggaatgatga
ttattcgatggccactacggacttgccaactacttccgttgaaacctctg
aaggcgatctagccttctttggtggcacaatagttaccgcagctcaactc
gctcatgtgacaaacgcaatgcgtacaacccgtcctggatggggggaaac
acaaccacacccacggacggacgtgaatgttcgcccgccgtttaatgcgt
tgagtgcacctatttgtcttctctgttaccgactcggtcatatcgcgcca
cgttgcatgttgaccttgagagacatgccgtctgttgtcactcagtacga
gtctgtatcgcctatcgatcaagctcggattctgaactggtcgtatctcc
gatctaaagccagttttggaccgtggacaacagtcataccgtgtccggaa
atcgaaatgtcgaacgctgatcagcagaccaagaacatcttacccaacaa
tgggaatccgtcagtttcccctgatggaggtcgaccgcttgttgcggaag
cttcgaacctgaaaaactagacatgggagtctccctgatggaggagcatc
ttccaagttgaggttgaagacgcccgaggcgtcaccagctaactccccgg
tcacaatccttaccaggaatatggctaaaactgacattgactcggaacac
gtagctgttttacgtcctccatggatatggtttaggaatccccgtactcc
ggatagaatccttgtgatggccaagcgtagctacaagatctatgcagacc
ttggcctgtcacaccagttcatggttagacagttatctgttttggataca
ggagccgaaataaatttgatcaattctggtattataccgtccacacttcg
gaataatattttctatggtccaggaagggatatcgccgatgcgataaata
atccgctccatacgattggaaaaatatctctcgcagtgcgattgggtacc
tatttcgttcaattagactttgtagtctgcaactccctcgctgcacccgt
gatacattgttgtgatttttgtgatcgatttgttgaagcaattcgtccca
gaacgagaacaggtatgatggatgacggatccacgattcctatcgtaagg
aaaccactgaatcgggcaacacaaaagaaagatccgttaccagttgtcca
ggaatcttttgacaaggacccccgctcaacgcgtctcaaggttgcgaaat
cgattacgatgcccccagaatcacaagtatgggttacagtgacatcccaa
catcatgggctacatattgtgcaacttttggcctctttgtataccaagca
tcaactcgctctggcaaatggtctggttctaatcgaacccgatactcctt
taaaggttctcgtggccaacttccgtaaaaccaatcaatggttaacgaag
aatcaaacactggactcagtacttccacacccaaccgctatcgtcccgac
gaagataccggttaccgatgttctcgcagtcctcgaacctaaggagaggg
aggaggatgatgatgttgacactacacgtgtagagcccgagttccaatat
tcggatacacaaccgacacgaccgaaagggttggaacagaaggctttgct
gcctggtacagatgatgttgatcctatgaaggagttggaaattttagatc
tggagcatgtcccagaagctcatcgtgagaagttaaaagaaatgtggaag
ggatttacccgtatgtgggatggttcccttggaacaataggaatcacgta
a
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Coding sequence (CDS) from alignment at tig00004378_pilon:1692262..1694662+

>Gchil3588.t1 ID=Gchil3588.t1|Name=Gchil3588.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=2340bp|location=Sequence derived from alignment at tig00004378_pilon:1692262..1694662+ (Gracilaria chilensis NLEC103_M9 male)
atgggtcttacactgcgttcgcaggatttcactgatgaagattctattct
aatacttgacgttcttgcaagattcgttcaggacgctgacatcctcccaa
tggacgaggcgcgagcttacattgccctaccgtattcctttatgggaatg
gctgaagatcagcacaattcagttcgaggatccttgagagcctcgaaagg
aggagttacctgttggcccgaagccgctcaatatcttttgaggtcatacg
ccactggtaccgagaatcaaaatgcaacactcgctctccgcgatacgaaa
cagaagcttggtgaaaccgaaacagtctattcaactcgattgcctaaggc
gtttccccgttgcggtaacgtgtattccgcctccgagcggtgtaaaatgt
ttgttgatggacttgatcctgccataaaagcgcttgttgcgcgacgccgt
gaagaaaaacggaggatgtcctacttggaactggtacagtacgcccaagc
tgaggtagattcactccgtgcccgacaacctactggacgtcgtctgtcca
aggtacttcacgccgaagtgtcttcaccgtctctttcactcttaaacaga
ggagtcgttggaacggaccacgataacgtccaattcacttggaatgatga
ttattcgatggccactacggacttgccaactacttccgttgaaacctctg
aaggcgatctagccttctttggtggcacaatagttaccgcagctcaactc
gctcatgtgacaaacgcaatgcgtacaacccgtcctggatggggggaaac
acaaccacacccacggacggacgtgaatgttcgcccgccgtttaatgcgt
tgagtgcacctatttgtcttctctgttaccgactcggtcatatcgcgcca
cgttgcatgttgaccttgagagacatgccgtctgttgtcactcagtacga
gtctgtatcgcctatcgatcaagctcggattctgaactggtcgtatctcc
gatctaaagccagttttggaccgtggacaacagtcataccgtgtccggaa
atcgaaatgtcgaacgctgatcagcagaccaagaacatcttacccaacaa
tgggaatccacatgggagtctccctgatggaggagcatcttccaagttga
ggttgaagacgcccgaggcgtcaccagctaactccccggtcacaatcctt
accaggaatatggctaaaactgacattgactcggaacacgtagctgtttt
acgtcctccatggatatggtttaggaatccccgtactccggatagaatcc
ttgtgatggccaagcgtagctacaagatctatgcagaccttggcctgtca
caccagttcatggttagacagttatctgttttggatacaggagccgaaat
aaatttgatcaattctggtattataccgtccacacttcggaataatattt
tctatggtccaggaagggatatcgccgatgcgataaataatccgctccat
acgattggaaaaatatctctcgcagtgcgattgggtacctatttcgttca
attagactttgtagtctgcaactccctcgctgcacccgtgatacattgtt
gtgatttttgtgatcgatttgttgaagcaattcgtcccagaacgagaaca
ggtatgatggatgacggatccacgattcctatcgtaaggaaaccactgaa
tcgggcaacacaaaagaaagatccgttaccagttgtccaggaatcttttg
acaaggacccccgctcaacgcgtctcaaggttgcgaaatcgattacgatg
cccccagaatcacaagtatgggttacagtgacatcccaacatcatgggct
acatattgtgcaacttttggcctctttgtataccaagcatcaactcgctc
tggcaaatggtctggttctaatcgaacccgatactcctttaaaggttctc
gtggccaacttccgtaaaaccaatcaatggttaacgaagaatcaaacact
ggactcagtacttccacacccaaccgctatcgtcccgacgaagataccgg
ttaccgatgttctcgcagtcctcgaacctaaggagagggaggaggatgat
gatgttgacactacacgtgtagagcccgagttccaatattcggatacaca
accgacacgaccgaaagggttggaacagaaggctttgctgcctggtacag
atgatgttgatcctatgaaggagttggaaattttagatctggagcatgtc
ccagaagctcatcgtgagaagttaaaagaaatgtggaagggatttacccg
tatgtgggatggttcccttggaacaataggaatcacgtaa
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