Gchil3587.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil3587.t1
Unique NameGchil3587.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length675
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004378_piloncontigtig00004378_pilon:1687878..1689968 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil3587Gchil3587Gracilaria chilensis NLEC103_M9 malegenetig00004378_pilon 1687878..1689968 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3587.t1Gchil3587.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004378_pilon 1687878..1689968 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3587.t1.stop1Gchil3587.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004378_pilon 1687878..1687880 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3587.t1.CDS1Gchil3587.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004378_pilon 1687878..1689470 -
Gchil3587.t1.CDS2Gchil3587.t1.CDS2Gracilaria chilensis NLEC103_M9 maleCDStig00004378_pilon 1689537..1689968 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3587.t1.exon1Gchil3587.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004378_pilon 1687878..1689470 -
Gchil3587.t1.exon2Gchil3587.t1.exon2Gracilaria chilensis NLEC103_M9 maleexontig00004378_pilon 1689537..1689968 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3587.t1.intron1Gchil3587.t1.intron1Gracilaria chilensis NLEC103_M9 maleintrontig00004378_pilon 1689471..1689536 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3587.t1.start1Gchil3587.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004378_pilon 1689966..1689968 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil3587.t1 ID=Gchil3587.t1|Name=Gchil3587.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=675bp
MEPPATRSRSRQSSDASGTDVPQALAPTPDSREIPVTGTEDPQPDSRLTT
VATVVSPPPRLVDQARIVRLEEQLRSLRAAHNTLSREFTSSRGSLANPPP
SELAEDIRVLRSDVNTLLECFGSPSSFAEGMENRFERLRSRLEWSRNRKS
RKNRDSNRKQGHPSDSSSESDGRRSDSESSDSSVSDDPQDRYGRSSRSKR
SSATYGAIRSRPKGRRHPGLKPLKPTNPLYRTLLSYRYYRLEDSSLGRTP
RDTGKVKDCIKRMQLSIRNQSFTGDDPILVLDFLHRFVAEADILGMIEGQ
AYVALHYFLRGVAEDQFLSVRGSSRASEGGVTCWPEAVQYLLHSYAPNSA
IEAVILALRDTRQRSGEIETDYSVRLNKAFHRCGNVYPAGERCTMFIDGL
DPAIKTLVACCREQEPKMTYLELVQFARAEGDALRARNPGTRSKAAKALL
LESDSSSPSFATDGIPKQGYDNMNVIHHDGLSIPTTELPSTTDGSVDSTA
RDTENGQVFYLNDRRTPAPRMPYSNGMTRSQRPGWVGNREPGRYTDARNA
VPRNAGVTLVCHLCYERGHTSPQCLLSLRDMARVVDNYEALSPQEKVSVP
LTSYLRAKMDFSKALAHTSNSRYKPAQPARAAPAPNHAGGSQPAPAVATV
QRNHALVAEEVGPSPDQDPVQGKE*
back to top

spliced messenger RNA

>Gchil3587.t1 ID=Gchil3587.t1|Name=Gchil3587.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=2025bp|location=Sequence derived from alignment at tig00004378_pilon:1687878..1689968- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGAGCCTCCTGCAACACGCAGCCGTTCCCGCCAAAGCAGTGATGCCAG
TGGCACTGATGTTCCACAGGCCCTGGCTCCAACACCGGATTCCCGGGAGA
TACCGGTCACCGGCACTGAAGACCCGCAGCCCGATTCCAGGTTAACGACC
GTCGCAACGGTGGTTTCTCCGCCTCCACGGTTGGTCGACCAAGCGCGGAT
TGTACGCTTGGAAGAGCAGCTCCGCTCCCTGCGGGCTGCTCACAATACCC
TCTCGAGGGAGTTCACCTCTTCACGAGGAAGCCTCGCTAACCCCCCTCCA
AGTGAGTTAGCCGAGGATATCCGCGTATTGCGGTCGGACGTCAATACACT
ACTCGAGTGTTTTGGCTCTCCGTCTTCCTTCGCAGAAGGTATGGAGAATC
GCTTCGAGCGTCTCCGAAGCCGACTTGAGTGGTCGCGGAACCGGAAGAGC
CGGAAGAACCGGGATTCTAACCGTAAGCAGGGACACCCGTCCGACTCATC
ATCTGAGTCTGACGGTAGACGGAGTGACTCGGAGAGTTCCGATTCGTCGG
TGAGCGATGACCCACAGGATCGTTATGGGCGCTCTTCCCGCTCAAAGCGG
TCCTCTGCCACCTACGGGGCCATCCGGTCGCGCCCCAAGGGTCGGCGACA
TCCGGGCCTCAAACCCTTGAAGCCCACCAACCCTCTGTACAGGACACTCC
TTTCCTACCGGTATTACCGGCTAGAAGATTCTTCTTTAGGTCGGACACCG
CGTGACACGGGTAAAGTGAAAGACTGCATCAAGCGGATGCAGCTTTCAAT
TCGTAACCAGTCGTTTACTGGGGATGATCCAATTCTGGTCTTGGATTTCC
TACACCGCTTTGTAGCGGAAGCCGATATACTCGGAATGATCGAAGGACAA
GCCTACGTGGCGCTACACTACTTTCTACGGGGTGTCGCTGAAGATCAGTT
TTTGTCGGTTCGGGGCTCATCGCGAGCCTCCGAAGGAGGTGTGACCTGCT
GGCCCGAGGCCGTGCAGTACCTACTGCATTCCTACGCACCCAACTCCGCG
ATAGAAGCGGTGATACTCGCTTTGCGAGACACTCGACAACGCTCCGGCGA
GATCGAGACCGATTACTCGGTACGCCTGAATAAGGCTTTCCACCGCTGTG
GTAATGTATACCCCGCTGGGGAACGCTGTACGATGTTCATTGATGGCTTG
GATCCAGCCATCAAGACTCTTGTCGCCTGTTGCAGGGAACAAGAGCCCAA
GATGACCTACCTTGAACTCGTACAGTTTGCCCGCGCAGAGGGAGATGCAC
TACGTGCGCGCAATCCGGGAACCCGGTCGAAGGCCGCTAAAGCATTGCTG
CTTGAGTCGGACTCTTCTTCACCGTCATTTGCGACTGATGGCATCCCCAA
ACAGGGTTATGACAATATGAATGTCATCCATCACGATGGTTTATCTATTC
CGACAACGGAATTACCGTCTACGACGGATGGCTCGGTTGACTCAACCGCA
AGGGACACGGAGAACGGGCAGGTCTTTTATCTTAATGACCGGCGCACTCC
GGCCCCCCGTATGCCGTACTCGAACGGAATGACACGAAGTCAGCGCCCTG
GATGGGTTGGAAACCGGGAACCCGGAAGATACACCGATGCTCGAAATGCC
GTACCGCGAAACGCGGGAGTGACGTTGGTGTGCCACTTGTGCTACGAGCG
CGGGCACACCTCCCCGCAATGCCTTTTATCGCTACGCGATATGGCGCGAG
TGGTGGATAATTACGAAGCCCTCTCCCCGCAGGAGAAGGTCTCCGTGCCA
CTCACGTCATACCTCCGCGCGAAGATGGACTTCTCAAAGGCATTGGCTCA
CACTTCGAATTCTCGGTACAAACCGGCTCAGCCGGCACGCGCCGCACCAG
CGCCAAACCACGCTGGTGGATCTCAACCCGCTCCTGCGGTAGCTACCGTG
CAACGGAATCATGCACTCGTTGCCGAGGAAGTCGGGCCTTCGCCCGACCA
GGACCCTGTACAGGGAAAAGAATAG
back to top

protein sequence of Gchil3587.t1

>Gchil3587.t1 ID=Gchil3587.t1|Name=Gchil3587.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=675bp
MEPPATRSRSRQSSDASGTDVPQALAPTPDSREIPVTGTEDPQPDSRLTT
VATVVSPPPRLVDQARIVRLEEQLRSLRAAHNTLSREFTSSRGSLANPPP
SELAEDIRVLRSDVNTLLECFGSPSSFAEGMENRFERLRSRLEWSRNRKS
RKNRDSNRKQGHPSDSSSESDGRRSDSESSDSSVSDDPQDRYGRSSRSKR
SSATYGAIRSRPKGRRHPGLKPLKPTNPLYRTLLSYRYYRLEDSSLGRTP
RDTGKVKDCIKRMQLSIRNQSFTGDDPILVLDFLHRFVAEADILGMIEGQ
AYVALHYFLRGVAEDQFLSVRGSSRASEGGVTCWPEAVQYLLHSYAPNSA
IEAVILALRDTRQRSGEIETDYSVRLNKAFHRCGNVYPAGERCTMFIDGL
DPAIKTLVACCREQEPKMTYLELVQFARAEGDALRARNPGTRSKAAKALL
LESDSSSPSFATDGIPKQGYDNMNVIHHDGLSIPTTELPSTTDGSVDSTA
RDTENGQVFYLNDRRTPAPRMPYSNGMTRSQRPGWVGNREPGRYTDARNA
VPRNAGVTLVCHLCYERGHTSPQCLLSLRDMARVVDNYEALSPQEKVSVP
LTSYLRAKMDFSKALAHTSNSRYKPAQPARAAPAPNHAGGSQPAPAVATV
QRNHALVAEEVGPSPDQDPVQGKE*
back to top

mRNA from alignment at tig00004378_pilon:1687878..1689968-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil3587.t1 ID=Gchil3587.t1|Name=Gchil3587.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=2091bp|location=Sequence derived from alignment at tig00004378_pilon:1687878..1689968- (Gracilaria chilensis NLEC103_M9 male)
ATGGAGCCTCCTGCAACACGCAGCCGTTCCCGCCAAAGCAGTGATGCCAG
TGGCACTGATGTTCCACAGGCCCTGGCTCCAACACCGGATTCCCGGGAGA
TACCGGTCACCGGCACTGAAGACCCGCAGCCCGATTCCAGGTTAACGACC
GTCGCAACGGTGGTTTCTCCGCCTCCACGGTTGGTCGACCAAGCGCGGAT
TGTACGCTTGGAAGAGCAGCTCCGCTCCCTGCGGGCTGCTCACAATACCC
TCTCGAGGGAGTTCACCTCTTCACGAGGAAGCCTCGCTAACCCCCCTCCA
AGTGAGTTAGCCGAGGATATCCGCGTATTGCGGTCGGACGTCAATACACT
ACTCGAGTGTTTTGGCTCTCCGTCTTCCTTCGCAGAAGGTATGGAGAATC
GCTTCGAGCGTCTCCGAAGCCGACTTGAGTGGGTCGAGAGGACGTTAACC
TCGCCCGCGAACTCGGCTAGACCGGTTGTCTCTCATTGAGAGACCCAGTC
GCGGAACCGGAAGAGCCGGAAGAACCGGGATTCTAACCGTAAGCAGGGAC
ACCCGTCCGACTCATCATCTGAGTCTGACGGTAGACGGAGTGACTCGGAG
AGTTCCGATTCGTCGGTGAGCGATGACCCACAGGATCGTTATGGGCGCTC
TTCCCGCTCAAAGCGGTCCTCTGCCACCTACGGGGCCATCCGGTCGCGCC
CCAAGGGTCGGCGACATCCGGGCCTCAAACCCTTGAAGCCCACCAACCCT
CTGTACAGGACACTCCTTTCCTACCGGTATTACCGGCTAGAAGATTCTTC
TTTAGGTCGGACACCGCGTGACACGGGTAAAGTGAAAGACTGCATCAAGC
GGATGCAGCTTTCAATTCGTAACCAGTCGTTTACTGGGGATGATCCAATT
CTGGTCTTGGATTTCCTACACCGCTTTGTAGCGGAAGCCGATATACTCGG
AATGATCGAAGGACAAGCCTACGTGGCGCTACACTACTTTCTACGGGGTG
TCGCTGAAGATCAGTTTTTGTCGGTTCGGGGCTCATCGCGAGCCTCCGAA
GGAGGTGTGACCTGCTGGCCCGAGGCCGTGCAGTACCTACTGCATTCCTA
CGCACCCAACTCCGCGATAGAAGCGGTGATACTCGCTTTGCGAGACACTC
GACAACGCTCCGGCGAGATCGAGACCGATTACTCGGTACGCCTGAATAAG
GCTTTCCACCGCTGTGGTAATGTATACCCCGCTGGGGAACGCTGTACGAT
GTTCATTGATGGCTTGGATCCAGCCATCAAGACTCTTGTCGCCTGTTGCA
GGGAACAAGAGCCCAAGATGACCTACCTTGAACTCGTACAGTTTGCCCGC
GCAGAGGGAGATGCACTACGTGCGCGCAATCCGGGAACCCGGTCGAAGGC
CGCTAAAGCATTGCTGCTTGAGTCGGACTCTTCTTCACCGTCATTTGCGA
CTGATGGCATCCCCAAACAGGGTTATGACAATATGAATGTCATCCATCAC
GATGGTTTATCTATTCCGACAACGGAATTACCGTCTACGACGGATGGCTC
GGTTGACTCAACCGCAAGGGACACGGAGAACGGGCAGGTCTTTTATCTTA
ATGACCGGCGCACTCCGGCCCCCCGTATGCCGTACTCGAACGGAATGACA
CGAAGTCAGCGCCCTGGATGGGTTGGAAACCGGGAACCCGGAAGATACAC
CGATGCTCGAAATGCCGTACCGCGAAACGCGGGAGTGACGTTGGTGTGCC
ACTTGTGCTACGAGCGCGGGCACACCTCCCCGCAATGCCTTTTATCGCTA
CGCGATATGGCGCGAGTGGTGGATAATTACGAAGCCCTCTCCCCGCAGGA
GAAGGTCTCCGTGCCACTCACGTCATACCTCCGCGCGAAGATGGACTTCT
CAAAGGCATTGGCTCACACTTCGAATTCTCGGTACAAACCGGCTCAGCCG
GCACGCGCCGCACCAGCGCCAAACCACGCTGGTGGATCTCAACCCGCTCC
TGCGGTAGCTACCGTGCAACGGAATCATGCACTCGTTGCCGAGGAAGTCG
GGCCTTCGCCCGACCAGGACCCTGTACAGGGAAAAGAATAG
back to top

Coding sequence (CDS) from alignment at tig00004378_pilon:1687878..1689968-

>Gchil3587.t1 ID=Gchil3587.t1|Name=Gchil3587.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=2025bp|location=Sequence derived from alignment at tig00004378_pilon:1687878..1689968- (Gracilaria chilensis NLEC103_M9 male)
ATGGAGCCTCCTGCAACACGCAGCCGTTCCCGCCAAAGCAGTGATGCCAG
TGGCACTGATGTTCCACAGGCCCTGGCTCCAACACCGGATTCCCGGGAGA
TACCGGTCACCGGCACTGAAGACCCGCAGCCCGATTCCAGGTTAACGACC
GTCGCAACGGTGGTTTCTCCGCCTCCACGGTTGGTCGACCAAGCGCGGAT
TGTACGCTTGGAAGAGCAGCTCCGCTCCCTGCGGGCTGCTCACAATACCC
TCTCGAGGGAGTTCACCTCTTCACGAGGAAGCCTCGCTAACCCCCCTCCA
AGTGAGTTAGCCGAGGATATCCGCGTATTGCGGTCGGACGTCAATACACT
ACTCGAGTGTTTTGGCTCTCCGTCTTCCTTCGCAGAAGGTATGGAGAATC
GCTTCGAGCGTCTCCGAAGCCGACTTGAGTGGTCGCGGAACCGGAAGAGC
CGGAAGAACCGGGATTCTAACCGTAAGCAGGGACACCCGTCCGACTCATC
ATCTGAGTCTGACGGTAGACGGAGTGACTCGGAGAGTTCCGATTCGTCGG
TGAGCGATGACCCACAGGATCGTTATGGGCGCTCTTCCCGCTCAAAGCGG
TCCTCTGCCACCTACGGGGCCATCCGGTCGCGCCCCAAGGGTCGGCGACA
TCCGGGCCTCAAACCCTTGAAGCCCACCAACCCTCTGTACAGGACACTCC
TTTCCTACCGGTATTACCGGCTAGAAGATTCTTCTTTAGGTCGGACACCG
CGTGACACGGGTAAAGTGAAAGACTGCATCAAGCGGATGCAGCTTTCAAT
TCGTAACCAGTCGTTTACTGGGGATGATCCAATTCTGGTCTTGGATTTCC
TACACCGCTTTGTAGCGGAAGCCGATATACTCGGAATGATCGAAGGACAA
GCCTACGTGGCGCTACACTACTTTCTACGGGGTGTCGCTGAAGATCAGTT
TTTGTCGGTTCGGGGCTCATCGCGAGCCTCCGAAGGAGGTGTGACCTGCT
GGCCCGAGGCCGTGCAGTACCTACTGCATTCCTACGCACCCAACTCCGCG
ATAGAAGCGGTGATACTCGCTTTGCGAGACACTCGACAACGCTCCGGCGA
GATCGAGACCGATTACTCGGTACGCCTGAATAAGGCTTTCCACCGCTGTG
GTAATGTATACCCCGCTGGGGAACGCTGTACGATGTTCATTGATGGCTTG
GATCCAGCCATCAAGACTCTTGTCGCCTGTTGCAGGGAACAAGAGCCCAA
GATGACCTACCTTGAACTCGTACAGTTTGCCCGCGCAGAGGGAGATGCAC
TACGTGCGCGCAATCCGGGAACCCGGTCGAAGGCCGCTAAAGCATTGCTG
CTTGAGTCGGACTCTTCTTCACCGTCATTTGCGACTGATGGCATCCCCAA
ACAGGGTTATGACAATATGAATGTCATCCATCACGATGGTTTATCTATTC
CGACAACGGAATTACCGTCTACGACGGATGGCTCGGTTGACTCAACCGCA
AGGGACACGGAGAACGGGCAGGTCTTTTATCTTAATGACCGGCGCACTCC
GGCCCCCCGTATGCCGTACTCGAACGGAATGACACGAAGTCAGCGCCCTG
GATGGGTTGGAAACCGGGAACCCGGAAGATACACCGATGCTCGAAATGCC
GTACCGCGAAACGCGGGAGTGACGTTGGTGTGCCACTTGTGCTACGAGCG
CGGGCACACCTCCCCGCAATGCCTTTTATCGCTACGCGATATGGCGCGAG
TGGTGGATAATTACGAAGCCCTCTCCCCGCAGGAGAAGGTCTCCGTGCCA
CTCACGTCATACCTCCGCGCGAAGATGGACTTCTCAAAGGCATTGGCTCA
CACTTCGAATTCTCGGTACAAACCGGCTCAGCCGGCACGCGCCGCACCAG
CGCCAAACCACGCTGGTGGATCTCAACCCGCTCCTGCGGTAGCTACCGTG
CAACGGAATCATGCACTCGTTGCCGAGGAAGTCGGGCCTTCGCCCGACCA
GGACCCTGTACAGGGAAAAGAATAG
back to top