Gchil3583.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil3583.t1
Unique NameGchil3583.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length269
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004378_piloncontigtig00004378_pilon:1671058..1671864 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog227086.JGI_V11_87329
PFAMsTIM
Max annot lvl2759|Eukaryota
KEGG rclassRC00423
KEGG koko:K01803
KEGG ReactionR01015
KEGG Pathwayko00010,ko00051,ko00562,ko00710,ko01100,ko01110,ko01120,ko01130,ko01200,ko01230,map00010,map00051,map00562,map00710,map01100,map01110,map01120,map01130,map01200,map01230
KEGG ModuleM00001,M00002,M00003
Evalue2.09e-111
EggNOG OGsCOG0149@1|root,KOG1643@2759|Eukaryota
EC5.3.1.1
Descriptiontriosephosphate isomerase
COG categoryG
BRITEko00000,ko00001,ko00002,ko01000,ko04147
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil3583Gchil3583Gracilaria chilensis NLEC103_M9 malegenetig00004378_pilon 1671058..1671864 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3583.t1.stop1Gchil3583.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004378_pilon 1671058..1671060 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3583.t1.CDS1Gchil3583.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004378_pilon 1671058..1671864 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3583.t1.exon1Gchil3583.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004378_pilon 1671058..1671864 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3583.t1.start1Gchil3583.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004378_pilon 1671862..1671864 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3583.t1Gchil3583.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004378_pilon 1671058..1671864 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil3583.t1 ID=Gchil3583.t1|Name=Gchil3583.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=269bp
MGADSPSGRKFFVGGNWKCNLNKATIAQLVAAFNDAPPLDADNVEVVIAP
PAPYLDLTRNALRLDFATSAQNAWLSAGGPYTGEMDATMVHDVGAEWVIL
GHSERRHLPQLLESDRFIAAKAAYALQTASLGVIYCVGELLNEREQGDTL
VVCERQLRALADAISDWSRVVIAYEPVWAIGTGKVATPEQAESVHKALRA
WLATNVSQPVADATRILYGGSVSPANCHQLAKQPNIDGFLVGGASMKPTF
LQIVDSYKTTLAGAGQVA*
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spliced messenger RNA

>Gchil3583.t1 ID=Gchil3583.t1|Name=Gchil3583.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=807bp|location=Sequence derived from alignment at tig00004378_pilon:1671058..1671864- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGGCGCTGACTCGCCCAGCGGCCGCAAGTTCTTCGTGGGCGGAAACTG
GAAATGTAACCTCAACAAGGCCACCATAGCACAGTTGGTGGCTGCTTTCA
ACGATGCACCCCCGCTGGATGCTGACAACGTAGAGGTTGTCATTGCCCCG
CCCGCCCCTTACCTCGACCTCACGCGCAACGCATTGCGCCTCGACTTTGC
CACCTCGGCGCAAAACGCCTGGCTGTCGGCGGGCGGCCCGTACACAGGCG
AGATGGACGCTACCATGGTGCACGACGTCGGTGCCGAATGGGTCATCCTG
GGCCATTCGGAGCGTCGTCACCTGCCGCAGCTGCTCGAATCGGACCGCTT
CATCGCCGCCAAGGCCGCTTACGCCCTACAGACCGCTTCGTTGGGCGTCA
TCTACTGCGTGGGCGAGCTCTTGAACGAACGTGAACAAGGCGATACGCTC
GTCGTGTGTGAGCGTCAGCTACGCGCCCTAGCCGACGCAATCTCCGATTG
GTCCCGCGTCGTCATTGCGTACGAGCCCGTGTGGGCCATTGGTACCGGAA
AGGTCGCCACGCCTGAACAGGCCGAGAGCGTGCACAAGGCGCTGCGCGCT
TGGTTGGCCACAAATGTCTCGCAGCCCGTCGCAGACGCCACCAGGATTCT
TTACGGCGGCAGTGTGTCGCCGGCAAACTGCCACCAGCTGGCCAAGCAAC
CCAACATTGACGGCTTTCTTGTTGGCGGCGCCAGTATGAAGCCCACCTTC
TTGCAGATTGTCGACTCGTACAAGACCACATTGGCCGGCGCTGGTCAAGT
TGCCTAG
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protein sequence of Gchil3583.t1

>Gchil3583.t1 ID=Gchil3583.t1|Name=Gchil3583.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=269bp
MGADSPSGRKFFVGGNWKCNLNKATIAQLVAAFNDAPPLDADNVEVVIAP
PAPYLDLTRNALRLDFATSAQNAWLSAGGPYTGEMDATMVHDVGAEWVIL
GHSERRHLPQLLESDRFIAAKAAYALQTASLGVIYCVGELLNEREQGDTL
VVCERQLRALADAISDWSRVVIAYEPVWAIGTGKVATPEQAESVHKALRA
WLATNVSQPVADATRILYGGSVSPANCHQLAKQPNIDGFLVGGASMKPTF
LQIVDSYKTTLAGAGQVA*
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mRNA from alignment at tig00004378_pilon:1671058..1671864-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil3583.t1 ID=Gchil3583.t1|Name=Gchil3583.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=807bp|location=Sequence derived from alignment at tig00004378_pilon:1671058..1671864- (Gracilaria chilensis NLEC103_M9 male)
ATGGGCGCTGACTCGCCCAGCGGCCGCAAGTTCTTCGTGGGCGGAAACTG
GAAATGTAACCTCAACAAGGCCACCATAGCACAGTTGGTGGCTGCTTTCA
ACGATGCACCCCCGCTGGATGCTGACAACGTAGAGGTTGTCATTGCCCCG
CCCGCCCCTTACCTCGACCTCACGCGCAACGCATTGCGCCTCGACTTTGC
CACCTCGGCGCAAAACGCCTGGCTGTCGGCGGGCGGCCCGTACACAGGCG
AGATGGACGCTACCATGGTGCACGACGTCGGTGCCGAATGGGTCATCCTG
GGCCATTCGGAGCGTCGTCACCTGCCGCAGCTGCTCGAATCGGACCGCTT
CATCGCCGCCAAGGCCGCTTACGCCCTACAGACCGCTTCGTTGGGCGTCA
TCTACTGCGTGGGCGAGCTCTTGAACGAACGTGAACAAGGCGATACGCTC
GTCGTGTGTGAGCGTCAGCTACGCGCCCTAGCCGACGCAATCTCCGATTG
GTCCCGCGTCGTCATTGCGTACGAGCCCGTGTGGGCCATTGGTACCGGAA
AGGTCGCCACGCCTGAACAGGCCGAGAGCGTGCACAAGGCGCTGCGCGCT
TGGTTGGCCACAAATGTCTCGCAGCCCGTCGCAGACGCCACCAGGATTCT
TTACGGCGGCAGTGTGTCGCCGGCAAACTGCCACCAGCTGGCCAAGCAAC
CCAACATTGACGGCTTTCTTGTTGGCGGCGCCAGTATGAAGCCCACCTTC
TTGCAGATTGTCGACTCGTACAAGACCACATTGGCCGGCGCTGGTCAAGT
TGCCTAG
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Coding sequence (CDS) from alignment at tig00004378_pilon:1671058..1671864-

>Gchil3583.t1 ID=Gchil3583.t1|Name=Gchil3583.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=807bp|location=Sequence derived from alignment at tig00004378_pilon:1671058..1671864- (Gracilaria chilensis NLEC103_M9 male)
ATGGGCGCTGACTCGCCCAGCGGCCGCAAGTTCTTCGTGGGCGGAAACTG
GAAATGTAACCTCAACAAGGCCACCATAGCACAGTTGGTGGCTGCTTTCA
ACGATGCACCCCCGCTGGATGCTGACAACGTAGAGGTTGTCATTGCCCCG
CCCGCCCCTTACCTCGACCTCACGCGCAACGCATTGCGCCTCGACTTTGC
CACCTCGGCGCAAAACGCCTGGCTGTCGGCGGGCGGCCCGTACACAGGCG
AGATGGACGCTACCATGGTGCACGACGTCGGTGCCGAATGGGTCATCCTG
GGCCATTCGGAGCGTCGTCACCTGCCGCAGCTGCTCGAATCGGACCGCTT
CATCGCCGCCAAGGCCGCTTACGCCCTACAGACCGCTTCGTTGGGCGTCA
TCTACTGCGTGGGCGAGCTCTTGAACGAACGTGAACAAGGCGATACGCTC
GTCGTGTGTGAGCGTCAGCTACGCGCCCTAGCCGACGCAATCTCCGATTG
GTCCCGCGTCGTCATTGCGTACGAGCCCGTGTGGGCCATTGGTACCGGAA
AGGTCGCCACGCCTGAACAGGCCGAGAGCGTGCACAAGGCGCTGCGCGCT
TGGTTGGCCACAAATGTCTCGCAGCCCGTCGCAGACGCCACCAGGATTCT
TTACGGCGGCAGTGTGTCGCCGGCAAACTGCCACCAGCTGGCCAAGCAAC
CCAACATTGACGGCTTTCTTGTTGGCGGCGCCAGTATGAAGCCCACCTTC
TTGCAGATTGTCGACTCGTACAAGACCACATTGGCCGGCGCTGGTCAAGT
TGCCTAG
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