Gchil3580.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil3580.t1
Unique NameGchil3580.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length286
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004378_piloncontigtig00004378_pilon:1666839..1667696 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog272952.HpaP814425
PFAMsDDRGK
Max annot lvl4776|Peronosporales
Evalue6.26e-29
EggNOG OGsKOG3054@1|root,KOG3054@2759|Eukaryota,3Q7M5@4776|Peronosporales
DescriptionDDRGK
COG categoryS
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil3580Gchil3580Gracilaria chilensis NLEC103_M9 malegenetig00004378_pilon 1666839..1667696 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3580.t1.stop1Gchil3580.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004378_pilon 1666839..1666841 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3580.t1.CDS1Gchil3580.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004378_pilon 1666839..1667696 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3580.t1.exon1Gchil3580.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004378_pilon 1666839..1667696 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3580.t1.start1Gchil3580.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004378_pilon 1667694..1667696 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3580.t1Gchil3580.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004378_pilon 1666839..1667696 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil3580.t1 ID=Gchil3580.t1|Name=Gchil3580.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=286bp
MALTVVELLPLAVLFMFLIALVGLLQRVRNAPERERDTELPTASAPQATP
RAQAENAQAPRRRRGGLARMQRDIAQAQAQAMDVGGSETESRSKGGKKKE
ARREAKREAQQARQAALERMREREAQLDEERREEEEAAAEARAQEEEEAR
KVADEREKKEKEEYESWRHLISVADEGEEATQAEEESEGLLERFCAFVRG
GKVVVLEDLAAHFGMKTEEVIDRLSRLEQSGELSGFFDDRGKFIYVSREE
MEEVARFIEKRGRISIQELAMKSSQLLHLDGAVGA*
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spliced messenger RNA

>Gchil3580.t1 ID=Gchil3580.t1|Name=Gchil3580.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=858bp|location=Sequence derived from alignment at tig00004378_pilon:1666839..1667696- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCGCTAACCGTCGTGGAACTGCTCCCGCTCGCGGTGCTATTCATGTT
CCTGATCGCGCTGGTGGGGCTTTTACAACGCGTAAGAAACGCCCCGGAGC
GTGAGCGCGACACCGAGCTGCCGACAGCCTCGGCACCGCAAGCAACGCCG
CGCGCACAAGCCGAAAACGCACAAGCGCCGCGTCGTCGCCGCGGCGGACT
AGCGCGCATGCAACGCGACATTGCACAAGCACAAGCACAAGCGATGGATG
TTGGGGGCAGCGAGACGGAGAGTCGCAGCAAAGGGGGTAAGAAGAAGGAG
GCGCGACGCGAGGCGAAACGCGAGGCGCAGCAGGCGCGACAAGCGGCTCT
GGAACGGATGCGCGAGCGCGAGGCGCAGTTGGACGAGGAACGGCGCGAGG
AGGAGGAGGCTGCGGCTGAGGCACGGGCACAAGAGGAGGAGGAGGCGCGC
AAGGTCGCCGACGAGCGCGAAAAGAAGGAGAAAGAGGAGTACGAGAGCTG
GCGACACCTGATTTCAGTGGCGGATGAGGGCGAAGAGGCGACGCAAGCAG
AGGAGGAGAGCGAGGGGCTGTTGGAGAGGTTTTGCGCGTTTGTGCGCGGG
GGAAAAGTGGTGGTGTTGGAAGACTTGGCGGCGCACTTTGGGATGAAGAC
GGAGGAGGTGATTGACCGGCTGTCGCGGCTGGAGCAGAGCGGGGAGTTGA
GCGGGTTTTTCGACGATCGTGGCAAGTTTATCTACGTGTCTCGGGAGGAG
ATGGAAGAAGTTGCTCGGTTTATTGAGAAGAGGGGACGGATCAGTATTCA
AGAGTTGGCGATGAAGAGTAGCCAACTGCTGCACCTCGACGGCGCGGTCG
GCGCGTGA
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protein sequence of Gchil3580.t1

>Gchil3580.t1 ID=Gchil3580.t1|Name=Gchil3580.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=286bp
MALTVVELLPLAVLFMFLIALVGLLQRVRNAPERERDTELPTASAPQATP
RAQAENAQAPRRRRGGLARMQRDIAQAQAQAMDVGGSETESRSKGGKKKE
ARREAKREAQQARQAALERMREREAQLDEERREEEEAAAEARAQEEEEAR
KVADEREKKEKEEYESWRHLISVADEGEEATQAEEESEGLLERFCAFVRG
GKVVVLEDLAAHFGMKTEEVIDRLSRLEQSGELSGFFDDRGKFIYVSREE
MEEVARFIEKRGRISIQELAMKSSQLLHLDGAVGA*
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mRNA from alignment at tig00004378_pilon:1666839..1667696-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil3580.t1 ID=Gchil3580.t1|Name=Gchil3580.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=858bp|location=Sequence derived from alignment at tig00004378_pilon:1666839..1667696- (Gracilaria chilensis NLEC103_M9 male)
ATGGCGCTAACCGTCGTGGAACTGCTCCCGCTCGCGGTGCTATTCATGTT
CCTGATCGCGCTGGTGGGGCTTTTACAACGCGTAAGAAACGCCCCGGAGC
GTGAGCGCGACACCGAGCTGCCGACAGCCTCGGCACCGCAAGCAACGCCG
CGCGCACAAGCCGAAAACGCACAAGCGCCGCGTCGTCGCCGCGGCGGACT
AGCGCGCATGCAACGCGACATTGCACAAGCACAAGCACAAGCGATGGATG
TTGGGGGCAGCGAGACGGAGAGTCGCAGCAAAGGGGGTAAGAAGAAGGAG
GCGCGACGCGAGGCGAAACGCGAGGCGCAGCAGGCGCGACAAGCGGCTCT
GGAACGGATGCGCGAGCGCGAGGCGCAGTTGGACGAGGAACGGCGCGAGG
AGGAGGAGGCTGCGGCTGAGGCACGGGCACAAGAGGAGGAGGAGGCGCGC
AAGGTCGCCGACGAGCGCGAAAAGAAGGAGAAAGAGGAGTACGAGAGCTG
GCGACACCTGATTTCAGTGGCGGATGAGGGCGAAGAGGCGACGCAAGCAG
AGGAGGAGAGCGAGGGGCTGTTGGAGAGGTTTTGCGCGTTTGTGCGCGGG
GGAAAAGTGGTGGTGTTGGAAGACTTGGCGGCGCACTTTGGGATGAAGAC
GGAGGAGGTGATTGACCGGCTGTCGCGGCTGGAGCAGAGCGGGGAGTTGA
GCGGGTTTTTCGACGATCGTGGCAAGTTTATCTACGTGTCTCGGGAGGAG
ATGGAAGAAGTTGCTCGGTTTATTGAGAAGAGGGGACGGATCAGTATTCA
AGAGTTGGCGATGAAGAGTAGCCAACTGCTGCACCTCGACGGCGCGGTCG
GCGCGTGA
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Coding sequence (CDS) from alignment at tig00004378_pilon:1666839..1667696-

>Gchil3580.t1 ID=Gchil3580.t1|Name=Gchil3580.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=858bp|location=Sequence derived from alignment at tig00004378_pilon:1666839..1667696- (Gracilaria chilensis NLEC103_M9 male)
ATGGCGCTAACCGTCGTGGAACTGCTCCCGCTCGCGGTGCTATTCATGTT
CCTGATCGCGCTGGTGGGGCTTTTACAACGCGTAAGAAACGCCCCGGAGC
GTGAGCGCGACACCGAGCTGCCGACAGCCTCGGCACCGCAAGCAACGCCG
CGCGCACAAGCCGAAAACGCACAAGCGCCGCGTCGTCGCCGCGGCGGACT
AGCGCGCATGCAACGCGACATTGCACAAGCACAAGCACAAGCGATGGATG
TTGGGGGCAGCGAGACGGAGAGTCGCAGCAAAGGGGGTAAGAAGAAGGAG
GCGCGACGCGAGGCGAAACGCGAGGCGCAGCAGGCGCGACAAGCGGCTCT
GGAACGGATGCGCGAGCGCGAGGCGCAGTTGGACGAGGAACGGCGCGAGG
AGGAGGAGGCTGCGGCTGAGGCACGGGCACAAGAGGAGGAGGAGGCGCGC
AAGGTCGCCGACGAGCGCGAAAAGAAGGAGAAAGAGGAGTACGAGAGCTG
GCGACACCTGATTTCAGTGGCGGATGAGGGCGAAGAGGCGACGCAAGCAG
AGGAGGAGAGCGAGGGGCTGTTGGAGAGGTTTTGCGCGTTTGTGCGCGGG
GGAAAAGTGGTGGTGTTGGAAGACTTGGCGGCGCACTTTGGGATGAAGAC
GGAGGAGGTGATTGACCGGCTGTCGCGGCTGGAGCAGAGCGGGGAGTTGA
GCGGGTTTTTCGACGATCGTGGCAAGTTTATCTACGTGTCTCGGGAGGAG
ATGGAAGAAGTTGCTCGGTTTATTGAGAAGAGGGGACGGATCAGTATTCA
AGAGTTGGCGATGAAGAGTAGCCAACTGCTGCACCTCGACGGCGCGGTCG
GCGCGTGA
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