Gchil3579.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil3579.t1
Unique NameGchil3579.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length503
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004378_piloncontigtig00004378_pilon:1663118..1664626 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil3579Gchil3579Gracilaria chilensis NLEC103_M9 malegenetig00004378_pilon 1663118..1664626 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3579.t1.stop1Gchil3579.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004378_pilon 1663118..1663120 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3579.t1.CDS1Gchil3579.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004378_pilon 1663118..1664626 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3579.t1.exon1Gchil3579.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004378_pilon 1663118..1664626 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3579.t1.start1Gchil3579.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004378_pilon 1664624..1664626 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3579.t1Gchil3579.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004378_pilon 1663118..1664626 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil3579.t1 ID=Gchil3579.t1|Name=Gchil3579.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=503bp
MFDPSIMHRALEPTLYDMHVQLDASATELAATFSLPVGYVAAHWLTSRTP
VALPAPASRSRRTRGAAAKTTEMEVEAAAIAKQFVVTLCARLHAFLAANA
DRCVEGAEGADATLRGARPSRAVMERFYDDVEATAAACLAARPPPPSWSA
WSGGRARSDSDDADEQQNEPDRFDDDDQRAWVACEEHNDNENDDDDDDDT
LRDVDVMDGVMHEYHEEHEDLRRVKRGGMAAAPGTQCAFDAHRTHKHVQL
EDDGRQAVKTVDGLYRVAAFKARMMQAGAVYTEMEVAELCRGGVVVGLGH
FEDGGGDALDGLLGGTAESGGVGFHSDGWVVRRGVWERYEGGTFGAGDVV
SVVALVGRECAGVGAQTGDDEEEVEEVPGSATLSRVSSRESAAAVLKATP
GVSPPRSSNGASTRTRTRCSCRVLLAVNGTVGQRVEAPTCLVGAAMAACV
YRGGSRVRARCCASQWRFFARVAAGGGGLTLRAACGRGGSRRRAGGRRSG
GR*
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spliced messenger RNA

>Gchil3579.t1 ID=Gchil3579.t1|Name=Gchil3579.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1509bp|location=Sequence derived from alignment at tig00004378_pilon:1663118..1664626- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTTCGACCCGTCCATCATGCATCGAGCGCTAGAGCCCACGTTGTACGA
CATGCACGTGCAGTTGGATGCCTCAGCCACAGAATTGGCCGCTACCTTCT
CGTTGCCAGTGGGATATGTCGCCGCCCATTGGCTCACGTCGCGCACGCCC
GTCGCGCTGCCCGCGCCCGCTTCGCGCAGTCGCCGCACACGGGGCGCGGC
GGCAAAGACGACAGAGATGGAAGTTGAGGCCGCCGCAATAGCGAAACAGT
TTGTGGTGACCCTATGTGCTAGATTGCATGCCTTCTTGGCTGCGAATGCC
GACCGTTGCGTGGAAGGCGCTGAGGGAGCTGACGCTACGCTGAGAGGGGC
GCGGCCGAGCCGCGCCGTGATGGAACGGTTTTATGACGATGTCGAGGCGA
CCGCTGCCGCTTGTTTGGCAGCGCGACCGCCGCCGCCGTCATGGTCGGCG
TGGTCGGGGGGGCGCGCTCGCAGCGATAGTGATGATGCGGACGAGCAGCA
GAATGAGCCCGATCGATTTGACGACGACGACCAGCGCGCGTGGGTGGCTT
GTGAGGAGCACAACGACAATGAAAATGATGACGATGACGATGACGATACG
CTACGCGACGTGGACGTGATGGACGGCGTGATGCACGAGTATCATGAAGA
GCATGAGGACCTGCGACGCGTCAAAAGAGGCGGGATGGCGGCGGCGCCAG
GGACACAATGTGCGTTTGACGCGCATCGCACTCACAAGCATGTGCAGCTG
GAGGATGATGGTCGCCAGGCGGTGAAGACTGTGGACGGATTGTACCGCGT
GGCGGCGTTCAAGGCGCGCATGATGCAGGCGGGCGCTGTATACACAGAGA
TGGAGGTGGCGGAGCTGTGTCGCGGCGGAGTTGTGGTCGGGTTGGGGCAC
TTTGAAGACGGAGGCGGCGACGCGCTAGACGGGCTGTTGGGTGGCACGGC
GGAGAGCGGCGGAGTGGGCTTTCACAGCGACGGCTGGGTGGTGCGGCGCG
GCGTGTGGGAGAGGTACGAAGGTGGGACTTTTGGTGCCGGTGACGTGGTG
TCGGTGGTGGCGCTGGTGGGGCGCGAGTGCGCGGGGGTTGGGGCGCAGAC
GGGTGACGACGAGGAAGAGGTGGAGGAGGTTCCGGGTAGCGCGACGCTGT
CGAGGGTGTCGTCACGAGAGAGCGCGGCGGCGGTACTGAAGGCGACTCCG
GGCGTTAGCCCGCCACGATCGTCGAACGGCGCGTCTACAAGGACTAGGAC
GCGATGCTCGTGCCGCGTTCTGCTGGCGGTGAACGGGACGGTTGGACAGC
GCGTGGAGGCGCCAACGTGTCTGGTGGGGGCGGCGATGGCGGCATGCGTG
TATCGCGGCGGGTCGCGCGTACGCGCGCGCTGCTGCGCGTCGCAGTGGCG
ATTCTTTGCGCGCGTGGCGGCCGGCGGTGGGGGACTGACGCTGCGCGCGG
CTTGCGGGCGCGGCGGGTCGCGACGTAGGGCAGGCGGACGAAGAAGTGGA
GGACGGTGA
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protein sequence of Gchil3579.t1

>Gchil3579.t1 ID=Gchil3579.t1|Name=Gchil3579.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=503bp
MFDPSIMHRALEPTLYDMHVQLDASATELAATFSLPVGYVAAHWLTSRTP
VALPAPASRSRRTRGAAAKTTEMEVEAAAIAKQFVVTLCARLHAFLAANA
DRCVEGAEGADATLRGARPSRAVMERFYDDVEATAAACLAARPPPPSWSA
WSGGRARSDSDDADEQQNEPDRFDDDDQRAWVACEEHNDNENDDDDDDDT
LRDVDVMDGVMHEYHEEHEDLRRVKRGGMAAAPGTQCAFDAHRTHKHVQL
EDDGRQAVKTVDGLYRVAAFKARMMQAGAVYTEMEVAELCRGGVVVGLGH
FEDGGGDALDGLLGGTAESGGVGFHSDGWVVRRGVWERYEGGTFGAGDVV
SVVALVGRECAGVGAQTGDDEEEVEEVPGSATLSRVSSRESAAAVLKATP
GVSPPRSSNGASTRTRTRCSCRVLLAVNGTVGQRVEAPTCLVGAAMAACV
YRGGSRVRARCCASQWRFFARVAAGGGGLTLRAACGRGGSRRRAGGRRSG
GR*
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mRNA from alignment at tig00004378_pilon:1663118..1664626-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil3579.t1 ID=Gchil3579.t1|Name=Gchil3579.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1509bp|location=Sequence derived from alignment at tig00004378_pilon:1663118..1664626- (Gracilaria chilensis NLEC103_M9 male)
ATGTTCGACCCGTCCATCATGCATCGAGCGCTAGAGCCCACGTTGTACGA
CATGCACGTGCAGTTGGATGCCTCAGCCACAGAATTGGCCGCTACCTTCT
CGTTGCCAGTGGGATATGTCGCCGCCCATTGGCTCACGTCGCGCACGCCC
GTCGCGCTGCCCGCGCCCGCTTCGCGCAGTCGCCGCACACGGGGCGCGGC
GGCAAAGACGACAGAGATGGAAGTTGAGGCCGCCGCAATAGCGAAACAGT
TTGTGGTGACCCTATGTGCTAGATTGCATGCCTTCTTGGCTGCGAATGCC
GACCGTTGCGTGGAAGGCGCTGAGGGAGCTGACGCTACGCTGAGAGGGGC
GCGGCCGAGCCGCGCCGTGATGGAACGGTTTTATGACGATGTCGAGGCGA
CCGCTGCCGCTTGTTTGGCAGCGCGACCGCCGCCGCCGTCATGGTCGGCG
TGGTCGGGGGGGCGCGCTCGCAGCGATAGTGATGATGCGGACGAGCAGCA
GAATGAGCCCGATCGATTTGACGACGACGACCAGCGCGCGTGGGTGGCTT
GTGAGGAGCACAACGACAATGAAAATGATGACGATGACGATGACGATACG
CTACGCGACGTGGACGTGATGGACGGCGTGATGCACGAGTATCATGAAGA
GCATGAGGACCTGCGACGCGTCAAAAGAGGCGGGATGGCGGCGGCGCCAG
GGACACAATGTGCGTTTGACGCGCATCGCACTCACAAGCATGTGCAGCTG
GAGGATGATGGTCGCCAGGCGGTGAAGACTGTGGACGGATTGTACCGCGT
GGCGGCGTTCAAGGCGCGCATGATGCAGGCGGGCGCTGTATACACAGAGA
TGGAGGTGGCGGAGCTGTGTCGCGGCGGAGTTGTGGTCGGGTTGGGGCAC
TTTGAAGACGGAGGCGGCGACGCGCTAGACGGGCTGTTGGGTGGCACGGC
GGAGAGCGGCGGAGTGGGCTTTCACAGCGACGGCTGGGTGGTGCGGCGCG
GCGTGTGGGAGAGGTACGAAGGTGGGACTTTTGGTGCCGGTGACGTGGTG
TCGGTGGTGGCGCTGGTGGGGCGCGAGTGCGCGGGGGTTGGGGCGCAGAC
GGGTGACGACGAGGAAGAGGTGGAGGAGGTTCCGGGTAGCGCGACGCTGT
CGAGGGTGTCGTCACGAGAGAGCGCGGCGGCGGTACTGAAGGCGACTCCG
GGCGTTAGCCCGCCACGATCGTCGAACGGCGCGTCTACAAGGACTAGGAC
GCGATGCTCGTGCCGCGTTCTGCTGGCGGTGAACGGGACGGTTGGACAGC
GCGTGGAGGCGCCAACGTGTCTGGTGGGGGCGGCGATGGCGGCATGCGTG
TATCGCGGCGGGTCGCGCGTACGCGCGCGCTGCTGCGCGTCGCAGTGGCG
ATTCTTTGCGCGCGTGGCGGCCGGCGGTGGGGGACTGACGCTGCGCGCGG
CTTGCGGGCGCGGCGGGTCGCGACGTAGGGCAGGCGGACGAAGAAGTGGA
GGACGGTGA
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Coding sequence (CDS) from alignment at tig00004378_pilon:1663118..1664626-

>Gchil3579.t1 ID=Gchil3579.t1|Name=Gchil3579.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1509bp|location=Sequence derived from alignment at tig00004378_pilon:1663118..1664626- (Gracilaria chilensis NLEC103_M9 male)
ATGTTCGACCCGTCCATCATGCATCGAGCGCTAGAGCCCACGTTGTACGA
CATGCACGTGCAGTTGGATGCCTCAGCCACAGAATTGGCCGCTACCTTCT
CGTTGCCAGTGGGATATGTCGCCGCCCATTGGCTCACGTCGCGCACGCCC
GTCGCGCTGCCCGCGCCCGCTTCGCGCAGTCGCCGCACACGGGGCGCGGC
GGCAAAGACGACAGAGATGGAAGTTGAGGCCGCCGCAATAGCGAAACAGT
TTGTGGTGACCCTATGTGCTAGATTGCATGCCTTCTTGGCTGCGAATGCC
GACCGTTGCGTGGAAGGCGCTGAGGGAGCTGACGCTACGCTGAGAGGGGC
GCGGCCGAGCCGCGCCGTGATGGAACGGTTTTATGACGATGTCGAGGCGA
CCGCTGCCGCTTGTTTGGCAGCGCGACCGCCGCCGCCGTCATGGTCGGCG
TGGTCGGGGGGGCGCGCTCGCAGCGATAGTGATGATGCGGACGAGCAGCA
GAATGAGCCCGATCGATTTGACGACGACGACCAGCGCGCGTGGGTGGCTT
GTGAGGAGCACAACGACAATGAAAATGATGACGATGACGATGACGATACG
CTACGCGACGTGGACGTGATGGACGGCGTGATGCACGAGTATCATGAAGA
GCATGAGGACCTGCGACGCGTCAAAAGAGGCGGGATGGCGGCGGCGCCAG
GGACACAATGTGCGTTTGACGCGCATCGCACTCACAAGCATGTGCAGCTG
GAGGATGATGGTCGCCAGGCGGTGAAGACTGTGGACGGATTGTACCGCGT
GGCGGCGTTCAAGGCGCGCATGATGCAGGCGGGCGCTGTATACACAGAGA
TGGAGGTGGCGGAGCTGTGTCGCGGCGGAGTTGTGGTCGGGTTGGGGCAC
TTTGAAGACGGAGGCGGCGACGCGCTAGACGGGCTGTTGGGTGGCACGGC
GGAGAGCGGCGGAGTGGGCTTTCACAGCGACGGCTGGGTGGTGCGGCGCG
GCGTGTGGGAGAGGTACGAAGGTGGGACTTTTGGTGCCGGTGACGTGGTG
TCGGTGGTGGCGCTGGTGGGGCGCGAGTGCGCGGGGGTTGGGGCGCAGAC
GGGTGACGACGAGGAAGAGGTGGAGGAGGTTCCGGGTAGCGCGACGCTGT
CGAGGGTGTCGTCACGAGAGAGCGCGGCGGCGGTACTGAAGGCGACTCCG
GGCGTTAGCCCGCCACGATCGTCGAACGGCGCGTCTACAAGGACTAGGAC
GCGATGCTCGTGCCGCGTTCTGCTGGCGGTGAACGGGACGGTTGGACAGC
GCGTGGAGGCGCCAACGTGTCTGGTGGGGGCGGCGATGGCGGCATGCGTG
TATCGCGGCGGGTCGCGCGTACGCGCGCGCTGCTGCGCGTCGCAGTGGCG
ATTCTTTGCGCGCGTGGCGGCCGGCGGTGGGGGACTGACGCTGCGCGCGG
CTTGCGGGCGCGGCGGGTCGCGACGTAGGGCAGGCGGACGAAGAAGTGGA
GGACGGTGA
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