Gchil3577.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil3577.t1
Unique NameGchil3577.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length287
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004378_piloncontigtig00004378_pilon:1608320..1609180 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog251221.35210952
PFAMsS4
Max annot lvl1117|Cyanobacteria
Evalue8.11e-41
EggNOG OGsCOG2302@1|root,COG2302@2|Bacteria,1G1VF@1117|Cyanobacteria
Descriptionphotosystem II S4 domain protein
COG categoryS
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil3577Gchil3577Gracilaria chilensis NLEC103_M9 malegenetig00004378_pilon 1608320..1609180 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3577.t1.stop1Gchil3577.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004378_pilon 1608320..1608322 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3577.t1.CDS1Gchil3577.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004378_pilon 1608320..1609180 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3577.t1.exon1Gchil3577.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004378_pilon 1608320..1609180 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3577.t1.start1Gchil3577.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004378_pilon 1609178..1609180 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3577.t1Gchil3577.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004378_pilon 1608320..1609180 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil3577.t1 ID=Gchil3577.t1|Name=Gchil3577.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=287bp
MCASRPRRTLCVNLSLSPQQTEKLLNFAHANNIEKMLAQNMLALSERAVR
ERTILTSHFLTPLESSCVLDIVRAIRDTRAMCWGGYGDAERRLLVVGCAY
RVEDEQRLLDAANHELVVVKLEGKFDERTTHRDFMGAVLSSGLDRSQIGD
ISVLDGQRGAQVITKGEAARILQGSVQSVRRATVSTRVEPISELEETQRV
LKEVNSVESSLRLDAVGSGGLNMSRAQFSKLLEKGLVCHNQHVARNGSKR
VEVDDTISARGVGKLRVQDVSRTKRGRFRVSMMRFM*
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spliced messenger RNA

>Gchil3577.t1 ID=Gchil3577.t1|Name=Gchil3577.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=861bp|location=Sequence derived from alignment at tig00004378_pilon:1608320..1609180- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTGTGCAAGCCGCCCCCGACGCACGTTGTGCGTAAATCTGTCTCTTAG
TCCGCAGCAAACCGAGAAGCTGCTGAATTTTGCACACGCCAACAACATAG
AAAAGATGCTGGCGCAAAACATGTTGGCGCTGAGTGAGCGAGCGGTGCGG
GAACGTACCATACTGACGTCACACTTTCTGACACCGTTGGAGAGCAGTTG
CGTATTGGACATTGTGCGCGCCATACGAGACACTCGTGCGATGTGCTGGG
GAGGATATGGCGACGCCGAGCGACGCCTTCTGGTGGTTGGCTGCGCATAC
CGTGTGGAAGACGAGCAACGGTTGCTTGACGCAGCAAACCACGAGCTGGT
GGTTGTAAAGCTTGAAGGAAAGTTTGATGAACGAACGACTCATCGAGACT
TCATGGGCGCCGTGTTGTCCAGCGGGTTGGATCGCTCGCAGATTGGCGAT
ATCAGCGTCTTGGACGGGCAGCGTGGCGCGCAGGTTATCACAAAGGGCGA
AGCAGCGCGCATCTTGCAGGGTAGCGTGCAGAGTGTGCGTCGCGCGACGG
TGAGCACGCGCGTAGAGCCCATCTCGGAGTTGGAGGAGACGCAGCGCGTG
CTGAAGGAGGTGAACAGCGTGGAGTCGTCTTTGCGGCTGGACGCTGTTGG
CAGTGGCGGACTGAACATGAGCCGCGCACAGTTCTCTAAGCTGCTGGAGA
AGGGACTTGTATGTCACAACCAGCACGTGGCGCGAAATGGCAGCAAACGA
GTTGAGGTGGATGACACCATCTCGGCGAGGGGGGTTGGTAAACTGCGCGT
GCAAGACGTGAGCCGCACGAAACGGGGACGATTCCGAGTAAGCATGATGC
GTTTCATGTGA
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protein sequence of Gchil3577.t1

>Gchil3577.t1 ID=Gchil3577.t1|Name=Gchil3577.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=287bp
MCASRPRRTLCVNLSLSPQQTEKLLNFAHANNIEKMLAQNMLALSERAVR
ERTILTSHFLTPLESSCVLDIVRAIRDTRAMCWGGYGDAERRLLVVGCAY
RVEDEQRLLDAANHELVVVKLEGKFDERTTHRDFMGAVLSSGLDRSQIGD
ISVLDGQRGAQVITKGEAARILQGSVQSVRRATVSTRVEPISELEETQRV
LKEVNSVESSLRLDAVGSGGLNMSRAQFSKLLEKGLVCHNQHVARNGSKR
VEVDDTISARGVGKLRVQDVSRTKRGRFRVSMMRFM*
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mRNA from alignment at tig00004378_pilon:1608320..1609180-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil3577.t1 ID=Gchil3577.t1|Name=Gchil3577.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=861bp|location=Sequence derived from alignment at tig00004378_pilon:1608320..1609180- (Gracilaria chilensis NLEC103_M9 male)
ATGTGTGCAAGCCGCCCCCGACGCACGTTGTGCGTAAATCTGTCTCTTAG
TCCGCAGCAAACCGAGAAGCTGCTGAATTTTGCACACGCCAACAACATAG
AAAAGATGCTGGCGCAAAACATGTTGGCGCTGAGTGAGCGAGCGGTGCGG
GAACGTACCATACTGACGTCACACTTTCTGACACCGTTGGAGAGCAGTTG
CGTATTGGACATTGTGCGCGCCATACGAGACACTCGTGCGATGTGCTGGG
GAGGATATGGCGACGCCGAGCGACGCCTTCTGGTGGTTGGCTGCGCATAC
CGTGTGGAAGACGAGCAACGGTTGCTTGACGCAGCAAACCACGAGCTGGT
GGTTGTAAAGCTTGAAGGAAAGTTTGATGAACGAACGACTCATCGAGACT
TCATGGGCGCCGTGTTGTCCAGCGGGTTGGATCGCTCGCAGATTGGCGAT
ATCAGCGTCTTGGACGGGCAGCGTGGCGCGCAGGTTATCACAAAGGGCGA
AGCAGCGCGCATCTTGCAGGGTAGCGTGCAGAGTGTGCGTCGCGCGACGG
TGAGCACGCGCGTAGAGCCCATCTCGGAGTTGGAGGAGACGCAGCGCGTG
CTGAAGGAGGTGAACAGCGTGGAGTCGTCTTTGCGGCTGGACGCTGTTGG
CAGTGGCGGACTGAACATGAGCCGCGCACAGTTCTCTAAGCTGCTGGAGA
AGGGACTTGTATGTCACAACCAGCACGTGGCGCGAAATGGCAGCAAACGA
GTTGAGGTGGATGACACCATCTCGGCGAGGGGGGTTGGTAAACTGCGCGT
GCAAGACGTGAGCCGCACGAAACGGGGACGATTCCGAGTAAGCATGATGC
GTTTCATGTGA
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Coding sequence (CDS) from alignment at tig00004378_pilon:1608320..1609180-

>Gchil3577.t1 ID=Gchil3577.t1|Name=Gchil3577.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=861bp|location=Sequence derived from alignment at tig00004378_pilon:1608320..1609180- (Gracilaria chilensis NLEC103_M9 male)
ATGTGTGCAAGCCGCCCCCGACGCACGTTGTGCGTAAATCTGTCTCTTAG
TCCGCAGCAAACCGAGAAGCTGCTGAATTTTGCACACGCCAACAACATAG
AAAAGATGCTGGCGCAAAACATGTTGGCGCTGAGTGAGCGAGCGGTGCGG
GAACGTACCATACTGACGTCACACTTTCTGACACCGTTGGAGAGCAGTTG
CGTATTGGACATTGTGCGCGCCATACGAGACACTCGTGCGATGTGCTGGG
GAGGATATGGCGACGCCGAGCGACGCCTTCTGGTGGTTGGCTGCGCATAC
CGTGTGGAAGACGAGCAACGGTTGCTTGACGCAGCAAACCACGAGCTGGT
GGTTGTAAAGCTTGAAGGAAAGTTTGATGAACGAACGACTCATCGAGACT
TCATGGGCGCCGTGTTGTCCAGCGGGTTGGATCGCTCGCAGATTGGCGAT
ATCAGCGTCTTGGACGGGCAGCGTGGCGCGCAGGTTATCACAAAGGGCGA
AGCAGCGCGCATCTTGCAGGGTAGCGTGCAGAGTGTGCGTCGCGCGACGG
TGAGCACGCGCGTAGAGCCCATCTCGGAGTTGGAGGAGACGCAGCGCGTG
CTGAAGGAGGTGAACAGCGTGGAGTCGTCTTTGCGGCTGGACGCTGTTGG
CAGTGGCGGACTGAACATGAGCCGCGCACAGTTCTCTAAGCTGCTGGAGA
AGGGACTTGTATGTCACAACCAGCACGTGGCGCGAAATGGCAGCAAACGA
GTTGAGGTGGATGACACCATCTCGGCGAGGGGGGTTGGTAAACTGCGCGT
GCAAGACGTGAGCCGCACGAAACGGGGACGATTCCGAGTAAGCATGATGC
GTTTCATGTGA
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