Gchil3574.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gchil3574.t1
Unique Name	Gchil3574.t1
Type	mRNA
Organism	Gracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length	382

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00004378_pilon	contig	tig00004378_pilon:1529134..1530279 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria chilensis NLEC103_M9 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	45351.EDO45249
PFAMs	PALP
Max annot lvl	33208\|Metazoa
KEGG rclass	RC00382
KEGG ko	ko:K05396
KEGG Reaction	R01874
KEGG Pathway	ko00270,map00270
Evalue	2.76e-74
EggNOG OGs	COG2515@1\|root,2QPS1@2759\|Eukaryota,38G9B@33154\|Opisthokonta,3BJTM@33208\|Metazoa
EC	4.4.1.15
Description	Pyridoxal-phosphate dependent enzyme
COG category	E
BRITE	ko00000,ko00001,ko01000

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gchil3574	Gchil3574	Gracilaria chilensis NLEC103_M9 male	gene	tig00004378_pilon 1529134..1530279 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil3574.t1.start1	Gchil3574.t1.start1	Gracilaria chilensis NLEC103_M9 male	start_codon	tig00004378_pilon 1529134..1529136 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil3574.t1.CDS1	Gchil3574.t1.CDS1	Gracilaria chilensis NLEC103_M9 male	CDS	tig00004378_pilon 1529134..1530279 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil3574.t1.exon1	Gchil3574.t1.exon1	Gracilaria chilensis NLEC103_M9 male	exon	tig00004378_pilon 1529134..1530279 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil3574.t1.stop1	Gchil3574.t1.stop1	Gracilaria chilensis NLEC103_M9 male	stop_codon	tig00004378_pilon 1530277..1530279 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil3574.t1	Gchil3574.t1	Gracilaria chilensis NLEC103_M9 male	polypeptide	tig00004378_pilon 1529134..1530279 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00004378_pilon:1529134..1530279+
coding sequence from alignment at tig00004378_pilon:1529134..1530279+

mRNA sequence

>Gchil3574.t1 ID=Gchil3574.t1|Name=Gchil3574.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=382bp
MPPARYAVRLARIQQQVQSRTHPFSPPCFANRFAYFAPTEKLSLAMTPTP
IQSLDIQRIAPDIPLSISIDVKRDDMTGLNTSGNKIRKLEFTLAEASKRQ
CDTIITCGALQSNHTRSTSVAAKELGFDVHVFLHANKKKMKQGIESNGNL
FFHRMLGVNAYVVPSEHYTRDIDTNMHSLRLELNRKGFRAHVIDLGGSNR
LGLWGDILAFEEILKQGGKEKYTDIVLPSGSAATASGFAVANYLCGSPFR
IHSISAENGAYYIYSYLNSMLELLGLQSEIHAKKLLNVMVAIGPGYDVNS
RNELEMCVKLANEFGLLLDPVYSLKAFYRLMMEIKVRRSTFSEVSRILFV
QTGAVFPLLDGRIFPFLRESRMKEWNISEIQ*

spliced messenger RNA

>Gchil3574.t1 ID=Gchil3574.t1|Name=Gchil3574.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1146bp|location=Sequence derived from alignment at tig00004378_pilon:1529134..1530279+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCCACCCGCGCGATATGCCGTGCGCCTGGCGCGCATCCAGCAACAAGT
GCAGTCTAGGACCCATCCCTTCTCACCGCCATGCTTTGCAAACCGCTTTG
CGTATTTCGCACCCACCGAGAAGCTCTCACTTGCTATGACCCCAACTCCA
ATTCAATCGCTCGACATACAGCGAATTGCGCCGGATATTCCGTTGTCTAT
TTCGATTGACGTGAAACGGGATGATATGACCGGTCTGAATACTTCGGGAA
ATAAGATCAGAAAACTCGAATTTACTCTCGCCGAGGCATCCAAAAGACAG
TGTGATACCATAATTACATGCGGTGCGTTGCAATCGAATCATACACGAAG
CACCTCGGTAGCTGCGAAGGAACTGGGCTTTGATGTTCATGTGTTTCTTC
ATGCCAACAAGAAGAAAATGAAACAAGGAATTGAATCAAATGGAAACTTA
TTCTTTCATCGCATGTTGGGAGTCAACGCATACGTGGTGCCCTCAGAGCA
TTATACAAGGGATATAGACACCAATATGCACTCTTTGAGACTTGAGTTGA
ATCGGAAGGGGTTCCGTGCCCACGTCATTGATTTAGGGGGTTCCAATAGA
CTCGGCTTGTGGGGCGATATTCTTGCATTTGAAGAAATTTTGAAGCAAGG
TGGAAAGGAAAAATATACCGACATCGTTCTTCCATCTGGATCGGCTGCCA
CGGCCAGTGGATTTGCAGTCGCAAATTACTTGTGCGGAAGCCCCTTTAGA
ATCCATTCAATATCTGCTGAGAACGGAGCGTACTACATCTACTCCTATTT
AAATTCCATGTTGGAGTTGCTTGGATTGCAGTCAGAGATACACGCAAAGA
AACTTCTCAACGTCATGGTTGCCATTGGCCCGGGATATGATGTCAACTCA
AGGAATGAATTGGAAATGTGCGTCAAACTAGCGAATGAATTTGGTCTTCT
TCTAGATCCTGTGTATTCTTTAAAAGCTTTTTACCGACTGATGATGGAGA
TAAAAGTCAGAAGAAGTACTTTTTCGGAAGTTTCTCGTATTTTGTTTGTG
CAGACTGGCGCTGTCTTCCCACTTTTGGACGGGAGAATCTTCCCTTTCTT
GCGTGAAAGCCGAATGAAGGAGTGGAACATATCTGAGATCCAATAA

protein sequence of Gchil3574.t1

>Gchil3574.t1 ID=Gchil3574.t1|Name=Gchil3574.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=382bp
MPPARYAVRLARIQQQVQSRTHPFSPPCFANRFAYFAPTEKLSLAMTPTP
IQSLDIQRIAPDIPLSISIDVKRDDMTGLNTSGNKIRKLEFTLAEASKRQ
CDTIITCGALQSNHTRSTSVAAKELGFDVHVFLHANKKKMKQGIESNGNL
FFHRMLGVNAYVVPSEHYTRDIDTNMHSLRLELNRKGFRAHVIDLGGSNR
LGLWGDILAFEEILKQGGKEKYTDIVLPSGSAATASGFAVANYLCGSPFR
IHSISAENGAYYIYSYLNSMLELLGLQSEIHAKKLLNVMVAIGPGYDVNS
RNELEMCVKLANEFGLLLDPVYSLKAFYRLMMEIKVRRSTFSEVSRILFV
QTGAVFPLLDGRIFPFLRESRMKEWNISEIQ*

mRNA from alignment at tig00004378_pilon:1529134..1530279+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gchil3574.t1 ID=Gchil3574.t1|Name=Gchil3574.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1146bp|location=Sequence derived from alignment at tig00004378_pilon:1529134..1530279+ (Gracilaria chilensis NLEC103_M9 male)
ATGCCACCCGCGCGATATGCCGTGCGCCTGGCGCGCATCCAGCAACAAGT
GCAGTCTAGGACCCATCCCTTCTCACCGCCATGCTTTGCAAACCGCTTTG
CGTATTTCGCACCCACCGAGAAGCTCTCACTTGCTATGACCCCAACTCCA
ATTCAATCGCTCGACATACAGCGAATTGCGCCGGATATTCCGTTGTCTAT
TTCGATTGACGTGAAACGGGATGATATGACCGGTCTGAATACTTCGGGAA
ATAAGATCAGAAAACTCGAATTTACTCTCGCCGAGGCATCCAAAAGACAG
TGTGATACCATAATTACATGCGGTGCGTTGCAATCGAATCATACACGAAG
CACCTCGGTAGCTGCGAAGGAACTGGGCTTTGATGTTCATGTGTTTCTTC
ATGCCAACAAGAAGAAAATGAAACAAGGAATTGAATCAAATGGAAACTTA
TTCTTTCATCGCATGTTGGGAGTCAACGCATACGTGGTGCCCTCAGAGCA
TTATACAAGGGATATAGACACCAATATGCACTCTTTGAGACTTGAGTTGA
ATCGGAAGGGGTTCCGTGCCCACGTCATTGATTTAGGGGGTTCCAATAGA
CTCGGCTTGTGGGGCGATATTCTTGCATTTGAAGAAATTTTGAAGCAAGG
TGGAAAGGAAAAATATACCGACATCGTTCTTCCATCTGGATCGGCTGCCA
CGGCCAGTGGATTTGCAGTCGCAAATTACTTGTGCGGAAGCCCCTTTAGA
ATCCATTCAATATCTGCTGAGAACGGAGCGTACTACATCTACTCCTATTT
AAATTCCATGTTGGAGTTGCTTGGATTGCAGTCAGAGATACACGCAAAGA
AACTTCTCAACGTCATGGTTGCCATTGGCCCGGGATATGATGTCAACTCA
AGGAATGAATTGGAAATGTGCGTCAAACTAGCGAATGAATTTGGTCTTCT
TCTAGATCCTGTGTATTCTTTAAAAGCTTTTTACCGACTGATGATGGAGA
TAAAAGTCAGAAGAAGTACTTTTTCGGAAGTTTCTCGTATTTTGTTTGTG
CAGACTGGCGCTGTCTTCCCACTTTTGGACGGGAGAATCTTCCCTTTCTT
GCGTGAAAGCCGAATGAAGGAGTGGAACATATCTGAGATCCAATAA

Coding sequence (CDS) from alignment at tig00004378_pilon:1529134..1530279+

>Gchil3574.t1 ID=Gchil3574.t1|Name=Gchil3574.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1146bp|location=Sequence derived from alignment at tig00004378_pilon:1529134..1530279+ (Gracilaria chilensis NLEC103_M9 male)
ATGCCACCCGCGCGATATGCCGTGCGCCTGGCGCGCATCCAGCAACAAGT
GCAGTCTAGGACCCATCCCTTCTCACCGCCATGCTTTGCAAACCGCTTTG
CGTATTTCGCACCCACCGAGAAGCTCTCACTTGCTATGACCCCAACTCCA
ATTCAATCGCTCGACATACAGCGAATTGCGCCGGATATTCCGTTGTCTAT
TTCGATTGACGTGAAACGGGATGATATGACCGGTCTGAATACTTCGGGAA
ATAAGATCAGAAAACTCGAATTTACTCTCGCCGAGGCATCCAAAAGACAG
TGTGATACCATAATTACATGCGGTGCGTTGCAATCGAATCATACACGAAG
CACCTCGGTAGCTGCGAAGGAACTGGGCTTTGATGTTCATGTGTTTCTTC
ATGCCAACAAGAAGAAAATGAAACAAGGAATTGAATCAAATGGAAACTTA
TTCTTTCATCGCATGTTGGGAGTCAACGCATACGTGGTGCCCTCAGAGCA
TTATACAAGGGATATAGACACCAATATGCACTCTTTGAGACTTGAGTTGA
ATCGGAAGGGGTTCCGTGCCCACGTCATTGATTTAGGGGGTTCCAATAGA
CTCGGCTTGTGGGGCGATATTCTTGCATTTGAAGAAATTTTGAAGCAAGG
TGGAAAGGAAAAATATACCGACATCGTTCTTCCATCTGGATCGGCTGCCA
CGGCCAGTGGATTTGCAGTCGCAAATTACTTGTGCGGAAGCCCCTTTAGA
ATCCATTCAATATCTGCTGAGAACGGAGCGTACTACATCTACTCCTATTT
AAATTCCATGTTGGAGTTGCTTGGATTGCAGTCAGAGATACACGCAAAGA
AACTTCTCAACGTCATGGTTGCCATTGGCCCGGGATATGATGTCAACTCA
AGGAATGAATTGGAAATGTGCGTCAAACTAGCGAATGAATTTGGTCTTCT
TCTAGATCCTGTGTATTCTTTAAAAGCTTTTTACCGACTGATGATGGAGA
TAAAAGTCAGAAGAAGTACTTTTTCGGAAGTTTCTCGTATTTTGTTTGTG
CAGACTGGCGCTGTCTTCCCACTTTTGGACGGGAGAATCTTCCCTTTCTT
GCGTGAAAGCCGAATGAAGGAGTGGAACATATCTGAGATCCAATAA