Gchil3572.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gchil3572.t1
Unique Name	Gchil3572.t1
Type	mRNA
Organism	Gracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length	386

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00004378_pilon	contig	tig00004378_pilon:1523455..1524612 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria chilensis NLEC103_M9 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	78898.MVEG_04553T0
Max annot lvl	4751\|Fungi
Evalue	5.29e-11
EggNOG OGs	2E3H1@1\|root,2SAJC@2759\|Eukaryota,3ARBF@33154\|Opisthokonta,3PFVF@4751\|Fungi
Description	Allomyces macrogynus ATCC 38327
COG category	S

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gchil3572	Gchil3572	Gracilaria chilensis NLEC103_M9 male	gene	tig00004378_pilon 1523455..1524612 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil3572.t1.start1	Gchil3572.t1.start1	Gracilaria chilensis NLEC103_M9 male	start_codon	tig00004378_pilon 1523455..1523457 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil3572.t1.CDS1	Gchil3572.t1.CDS1	Gracilaria chilensis NLEC103_M9 male	CDS	tig00004378_pilon 1523455..1524612 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil3572.t1.exon1	Gchil3572.t1.exon1	Gracilaria chilensis NLEC103_M9 male	exon	tig00004378_pilon 1523455..1524612 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil3572.t1.stop1	Gchil3572.t1.stop1	Gracilaria chilensis NLEC103_M9 male	stop_codon	tig00004378_pilon 1524610..1524612 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil3572.t1	Gchil3572.t1	Gracilaria chilensis NLEC103_M9 male	polypeptide	tig00004378_pilon 1523455..1524612 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00004378_pilon:1523455..1524612+
coding sequence from alignment at tig00004378_pilon:1523455..1524612+

mRNA sequence

>Gchil3572.t1 ID=Gchil3572.t1|Name=Gchil3572.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=386bp
MTRFTVAAAAVVVALLAVVLPHAHAHQSISYPWPMSRMNACRMGKFKNCP
GPCPNDEIRADQSPNYPSITVSRNAFVTINTKRNNHAGGFSRWSIVNVDD
MNDRTAHDREAFLWTCADLNKQRCDTINYDRDCSFDGKSSFYQHEVQIPP
VYSDGVYVLGWAWYGGTQGHGRGGDFGDYYDCMYVNIEGGDTSDSYAPKF
EPGPSDTARDGKCAARTNRLGDCVSEPCNGRRAGHMLPREFEGGSPQLLQ
SRRFSGYQIERPPATAPAVYGISIREANDPSTVYASSTDGPIAQIRLNGQ
SITVTCDVEGDVDKVEFYKHGEDLMETDTTAPYSIAGEYTVDGGSEYRYK
PMRYKREDDIYLLSCGVYGKDGSVQWARLEVWQTK*

spliced messenger RNA

>Gchil3572.t1 ID=Gchil3572.t1|Name=Gchil3572.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1158bp|location=Sequence derived from alignment at tig00004378_pilon:1523455..1524612+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGACGCGCTTCAccgtcgccgccgccgccgtcgtcgtcgcGCTGTTGGC
CGTCGTGCTGCCGCACGCGCACGCGCATCAGTCCATCTCATACCCATGGC
CCATGTCTCGCATGAACGCCTGTCGCATGGGAAAGTTCAAAAACTGTCCA
GGACCGTGTCCCAACGACGAGATTCGCGCCGATCAATCTCCCAATTATCC
GTCCATCACCGTGTCGCGCAACGCCTTTGTCACCATAAACACCAAACGAA
ACAATCATGCGGGAGGCTTTTCACGCTGGAGTATTGTCAACGTCGATGAT
ATGAATGATCGTACCGCACACGATCGTGAGGCCTTTTTGTGGACCTGTGC
CGATCTTAACAAGCAACGTTGCGATACTATCAATTATGACCGCGATTGTT
CGTTTGATGGCAAGAGTAGCTTCTATCAACATGAGGTACAGATTCCTCCC
GTGTACTCTGACGGCGTGTACGTGTTGGGCTGGGCTTGGTATGGAGGCAC
TCAGGGTCACGGTCGCGGTGGTGATTTTGGTGATTACTACGATTGCATGT
ACGTCAACATTGAAGGAGGCGATACCTCCGACTCATATGCACCCAAGTTC
GAGCCAGGTCCGTCTGACACTGCACGCGATGGCAAGTGTGCCGCACGCAC
CAATCGTCTGGGCGATTGTGTCAGTGAGCCTTGTAACGGACGTCGCGCCG
GACACATGCTACCCAGGGAGTTTGAAGGAGGCTCACCACAGCTTTTGCAA
AGTCGTCGATTTTCTGGCTACCAAATTGAACGTCCGCCTGCTACGGCTCC
TGCTGTGTATGGTATCTCCATTCGAGAGGCGAATGACCCGTCTACTGTGT
ACGCTTCCTCCACGGATGGCCCTATTGCGCAGATTCGATTGAATGGACAA
TCCATCACGGTGACGTGCGACGTGGAGGGCGATGTGGACAAGGTTGAGTT
TTACAAGCATGGCGAGGATCTTATGGAAACAGACACTACAGCGCCGTATA
GCATTGCCGGTGAGTACACTGTCGACGGCGGTAGCGAGTATAGGTACAAA
CCGATGAGGTACAAGCGGGAGGATGATATTTACTTGCTGTCGTGCGGCGT
GTATGGTAAGGATGGTAGCGTGCAGTGGGCGAGGTTGGAAGTGTGGCAAA
CCAAATAA

protein sequence of Gchil3572.t1

>Gchil3572.t1 ID=Gchil3572.t1|Name=Gchil3572.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=386bp
MTRFTVAAAAVVVALLAVVLPHAHAHQSISYPWPMSRMNACRMGKFKNCP
GPCPNDEIRADQSPNYPSITVSRNAFVTINTKRNNHAGGFSRWSIVNVDD
MNDRTAHDREAFLWTCADLNKQRCDTINYDRDCSFDGKSSFYQHEVQIPP
VYSDGVYVLGWAWYGGTQGHGRGGDFGDYYDCMYVNIEGGDTSDSYAPKF
EPGPSDTARDGKCAARTNRLGDCVSEPCNGRRAGHMLPREFEGGSPQLLQ
SRRFSGYQIERPPATAPAVYGISIREANDPSTVYASSTDGPIAQIRLNGQ
SITVTCDVEGDVDKVEFYKHGEDLMETDTTAPYSIAGEYTVDGGSEYRYK
PMRYKREDDIYLLSCGVYGKDGSVQWARLEVWQTK*

mRNA from alignment at tig00004378_pilon:1523455..1524612+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gchil3572.t1 ID=Gchil3572.t1|Name=Gchil3572.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1158bp|location=Sequence derived from alignment at tig00004378_pilon:1523455..1524612+ (Gracilaria chilensis NLEC103_M9 male)
ATGACGCGCTTCAccgtcgccgccgccgccgtcgtcgtcgcGCTGTTGGC
CGTCGTGCTGCCGCACGCGCACGCGCATCAGTCCATCTCATACCCATGGC
CCATGTCTCGCATGAACGCCTGTCGCATGGGAAAGTTCAAAAACTGTCCA
GGACCGTGTCCCAACGACGAGATTCGCGCCGATCAATCTCCCAATTATCC
GTCCATCACCGTGTCGCGCAACGCCTTTGTCACCATAAACACCAAACGAA
ACAATCATGCGGGAGGCTTTTCACGCTGGAGTATTGTCAACGTCGATGAT
ATGAATGATCGTACCGCACACGATCGTGAGGCCTTTTTGTGGACCTGTGC
CGATCTTAACAAGCAACGTTGCGATACTATCAATTATGACCGCGATTGTT
CGTTTGATGGCAAGAGTAGCTTCTATCAACATGAGGTACAGATTCCTCCC
GTGTACTCTGACGGCGTGTACGTGTTGGGCTGGGCTTGGTATGGAGGCAC
TCAGGGTCACGGTCGCGGTGGTGATTTTGGTGATTACTACGATTGCATGT
ACGTCAACATTGAAGGAGGCGATACCTCCGACTCATATGCACCCAAGTTC
GAGCCAGGTCCGTCTGACACTGCACGCGATGGCAAGTGTGCCGCACGCAC
CAATCGTCTGGGCGATTGTGTCAGTGAGCCTTGTAACGGACGTCGCGCCG
GACACATGCTACCCAGGGAGTTTGAAGGAGGCTCACCACAGCTTTTGCAA
AGTCGTCGATTTTCTGGCTACCAAATTGAACGTCCGCCTGCTACGGCTCC
TGCTGTGTATGGTATCTCCATTCGAGAGGCGAATGACCCGTCTACTGTGT
ACGCTTCCTCCACGGATGGCCCTATTGCGCAGATTCGATTGAATGGACAA
TCCATCACGGTGACGTGCGACGTGGAGGGCGATGTGGACAAGGTTGAGTT
TTACAAGCATGGCGAGGATCTTATGGAAACAGACACTACAGCGCCGTATA
GCATTGCCGGTGAGTACACTGTCGACGGCGGTAGCGAGTATAGGTACAAA
CCGATGAGGTACAAGCGGGAGGATGATATTTACTTGCTGTCGTGCGGCGT
GTATGGTAAGGATGGTAGCGTGCAGTGGGCGAGGTTGGAAGTGTGGCAAA
CCAAATAA

Coding sequence (CDS) from alignment at tig00004378_pilon:1523455..1524612+

>Gchil3572.t1 ID=Gchil3572.t1|Name=Gchil3572.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1158bp|location=Sequence derived from alignment at tig00004378_pilon:1523455..1524612+ (Gracilaria chilensis NLEC103_M9 male)
ATGACGCGCTTCAccgtcgccgccgccgccgtcgtcgtcgcGCTGTTGGC
CGTCGTGCTGCCGCACGCGCACGCGCATCAGTCCATCTCATACCCATGGC
CCATGTCTCGCATGAACGCCTGTCGCATGGGAAAGTTCAAAAACTGTCCA
GGACCGTGTCCCAACGACGAGATTCGCGCCGATCAATCTCCCAATTATCC
GTCCATCACCGTGTCGCGCAACGCCTTTGTCACCATAAACACCAAACGAA
ACAATCATGCGGGAGGCTTTTCACGCTGGAGTATTGTCAACGTCGATGAT
ATGAATGATCGTACCGCACACGATCGTGAGGCCTTTTTGTGGACCTGTGC
CGATCTTAACAAGCAACGTTGCGATACTATCAATTATGACCGCGATTGTT
CGTTTGATGGCAAGAGTAGCTTCTATCAACATGAGGTACAGATTCCTCCC
GTGTACTCTGACGGCGTGTACGTGTTGGGCTGGGCTTGGTATGGAGGCAC
TCAGGGTCACGGTCGCGGTGGTGATTTTGGTGATTACTACGATTGCATGT
ACGTCAACATTGAAGGAGGCGATACCTCCGACTCATATGCACCCAAGTTC
GAGCCAGGTCCGTCTGACACTGCACGCGATGGCAAGTGTGCCGCACGCAC
CAATCGTCTGGGCGATTGTGTCAGTGAGCCTTGTAACGGACGTCGCGCCG
GACACATGCTACCCAGGGAGTTTGAAGGAGGCTCACCACAGCTTTTGCAA
AGTCGTCGATTTTCTGGCTACCAAATTGAACGTCCGCCTGCTACGGCTCC
TGCTGTGTATGGTATCTCCATTCGAGAGGCGAATGACCCGTCTACTGTGT
ACGCTTCCTCCACGGATGGCCCTATTGCGCAGATTCGATTGAATGGACAA
TCCATCACGGTGACGTGCGACGTGGAGGGCGATGTGGACAAGGTTGAGTT
TTACAAGCATGGCGAGGATCTTATGGAAACAGACACTACAGCGCCGTATA
GCATTGCCGGTGAGTACACTGTCGACGGCGGTAGCGAGTATAGGTACAAA
CCGATGAGGTACAAGCGGGAGGATGATATTTACTTGCTGTCGTGCGGCGT
GTATGGTAAGGATGGTAGCGTGCAGTGGGCGAGGTTGGAAGTGTGGCAAA
CCAAATAA