Gchil3571.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gchil3571.t1
Unique Name	Gchil3571.t1
Type	mRNA
Organism	Gracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length	277

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00004378_pilon	contig	tig00004378_pilon:1424489..1425319 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria chilensis NLEC103_M9 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	1380370.JIBA01000013_gene1236
PFAMs	Calx-beta,HYR,VWA
Max annot lvl	201174\|Actinobacteria
Evalue	1.07e-25
EggNOG OGs	COG2304@1\|root,COG2304@2\|Bacteria,2IDJM@201174\|Actinobacteria,4FGAR@85021\|Intrasporangiaceae
Description	von Willebrand factor (vWF) type A domain
COG category	S

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gchil3571	Gchil3571	Gracilaria chilensis NLEC103_M9 male	gene	tig00004378_pilon 1424489..1425319 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil3571.t1.start1	Gchil3571.t1.start1	Gracilaria chilensis NLEC103_M9 male	start_codon	tig00004378_pilon 1424489..1424491 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil3571.t1.CDS1	Gchil3571.t1.CDS1	Gracilaria chilensis NLEC103_M9 male	CDS	tig00004378_pilon 1424489..1425319 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil3571.t1.exon1	Gchil3571.t1.exon1	Gracilaria chilensis NLEC103_M9 male	exon	tig00004378_pilon 1424489..1425319 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil3571.t1.stop1	Gchil3571.t1.stop1	Gracilaria chilensis NLEC103_M9 male	stop_codon	tig00004378_pilon 1425317..1425319 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil3571.t1	Gchil3571.t1	Gracilaria chilensis NLEC103_M9 male	polypeptide	tig00004378_pilon 1424489..1425319 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00004378_pilon:1424489..1425319+
coding sequence from alignment at tig00004378_pilon:1424489..1425319+

mRNA sequence

>Gchil3571.t1 ID=Gchil3571.t1|Name=Gchil3571.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=277bp
MGTAISEVKTRFIEIVNLYENLTDAHFGIGLFRDEAERDSALEFGFMNAQ
SLTGNRADVFTAIDSLVARGGGDADEANLVALNKVATNADIGWRPNSRKI
LVYFGDNPGHEPTCIGGGPITRDTVIENLKAKNITVVAVSFGTGLDRSPR
PFECASGNAGTGQGTAIATATGGVLLPNTQQAKVIEAIENAVLNLNRTYD
LDSSDCDGKLITSTNPALPITLAPRDSQVVDQIIVIESGVCTGGATFECT
LKYTEAGASLAPTRLKFLDIQGCPEF*

spliced messenger RNA

>Gchil3571.t1 ID=Gchil3571.t1|Name=Gchil3571.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=831bp|location=Sequence derived from alignment at tig00004378_pilon:1424489..1425319+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGGCACAGCGATTAGTGAAGTGAAAACTCGATTCATCGAAATAGTCAA
CCTTTACGAAAACCTGACAGATGCGCATTTTGGAATCGGACTTTTCCGCG
ACGAGGCTGAGCGTGATTCAGCTCTAGAATTTGGTTTCATGAATGCTCAA
AGTCTTACTGGGAATCGGGCTGATGTCTTTACTGCCATTGATTCGCTCGT
TGCCCGAGGAGGTGGAGATGCTGATGAAGCCAATCTTGTTGCTTTAAATA
AGGTTGCAACGAACGCTGATATCGGATGGAGGCCAAACTCCCGTAAGATA
CTAGTATACTTTGGAGACAATCCAGGTCATGAACCAACTTGTATCGGCGG
AGGACCGATTACAAGAGACACCGTTATTGAGAACTTGAAAGCTAAAAATA
TTACTGTTGTGGCAGTAAGCTTCGGTACAGGTCTTGACAGATCGCCTCGT
CCATTTGAATGTGCATCTGGGAATGCAGGAACTGGGCAGGGAACTGCGAT
AGCAACCGCCACGGGGGGCGTTCTTCTTCCAAACACACAGCAAGCGAAAG
TAATTGAAGCCATCGAAAATGCAGTATTAAATTTGAATAGGACATATGAT
CTTGATTCTTCCGACTGCGATGGAAAACTGATAACCTCTACCAATCCAGC
TTTGCCGATTACTCTTGCTCCTAGAGACTCTCAAGTTGTGGACCAAATCA
TTGTGATTGAGTCTGGAGTGTGCACGGGAGGGGCTACTTTCGAGTGCACT
CTGAAGTACACTGAAGCTGGAGCAAGCCTTGCTCCCACGAGGCTCAAGTT
CTTGGATATTCAAGGCTGCCCAGAATTCTAA

protein sequence of Gchil3571.t1

>Gchil3571.t1 ID=Gchil3571.t1|Name=Gchil3571.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=277bp
MGTAISEVKTRFIEIVNLYENLTDAHFGIGLFRDEAERDSALEFGFMNAQ
SLTGNRADVFTAIDSLVARGGGDADEANLVALNKVATNADIGWRPNSRKI
LVYFGDNPGHEPTCIGGGPITRDTVIENLKAKNITVVAVSFGTGLDRSPR
PFECASGNAGTGQGTAIATATGGVLLPNTQQAKVIEAIENAVLNLNRTYD
LDSSDCDGKLITSTNPALPITLAPRDSQVVDQIIVIESGVCTGGATFECT
LKYTEAGASLAPTRLKFLDIQGCPEF*

mRNA from alignment at tig00004378_pilon:1424489..1425319+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gchil3571.t1 ID=Gchil3571.t1|Name=Gchil3571.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=831bp|location=Sequence derived from alignment at tig00004378_pilon:1424489..1425319+ (Gracilaria chilensis NLEC103_M9 male)
ATGGGCACAGCGATTAGTGAAGTGAAAACTCGATTCATCGAAATAGTCAA
CCTTTACGAAAACCTGACAGATGCGCATTTTGGAATCGGACTTTTCCGCG
ACGAGGCTGAGCGTGATTCAGCTCTAGAATTTGGTTTCATGAATGCTCAA
AGTCTTACTGGGAATCGGGCTGATGTCTTTACTGCCATTGATTCGCTCGT
TGCCCGAGGAGGTGGAGATGCTGATGAAGCCAATCTTGTTGCTTTAAATA
AGGTTGCAACGAACGCTGATATCGGATGGAGGCCAAACTCCCGTAAGATA
CTAGTATACTTTGGAGACAATCCAGGTCATGAACCAACTTGTATCGGCGG
AGGACCGATTACAAGAGACACCGTTATTGAGAACTTGAAAGCTAAAAATA
TTACTGTTGTGGCAGTAAGCTTCGGTACAGGTCTTGACAGATCGCCTCGT
CCATTTGAATGTGCATCTGGGAATGCAGGAACTGGGCAGGGAACTGCGAT
AGCAACCGCCACGGGGGGCGTTCTTCTTCCAAACACACAGCAAGCGAAAG
TAATTGAAGCCATCGAAAATGCAGTATTAAATTTGAATAGGACATATGAT
CTTGATTCTTCCGACTGCGATGGAAAACTGATAACCTCTACCAATCCAGC
TTTGCCGATTACTCTTGCTCCTAGAGACTCTCAAGTTGTGGACCAAATCA
TTGTGATTGAGTCTGGAGTGTGCACGGGAGGGGCTACTTTCGAGTGCACT
CTGAAGTACACTGAAGCTGGAGCAAGCCTTGCTCCCACGAGGCTCAAGTT
CTTGGATATTCAAGGCTGCCCAGAATTCTAA

Coding sequence (CDS) from alignment at tig00004378_pilon:1424489..1425319+

>Gchil3571.t1 ID=Gchil3571.t1|Name=Gchil3571.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=831bp|location=Sequence derived from alignment at tig00004378_pilon:1424489..1425319+ (Gracilaria chilensis NLEC103_M9 male)
ATGGGCACAGCGATTAGTGAAGTGAAAACTCGATTCATCGAAATAGTCAA
CCTTTACGAAAACCTGACAGATGCGCATTTTGGAATCGGACTTTTCCGCG
ACGAGGCTGAGCGTGATTCAGCTCTAGAATTTGGTTTCATGAATGCTCAA
AGTCTTACTGGGAATCGGGCTGATGTCTTTACTGCCATTGATTCGCTCGT
TGCCCGAGGAGGTGGAGATGCTGATGAAGCCAATCTTGTTGCTTTAAATA
AGGTTGCAACGAACGCTGATATCGGATGGAGGCCAAACTCCCGTAAGATA
CTAGTATACTTTGGAGACAATCCAGGTCATGAACCAACTTGTATCGGCGG
AGGACCGATTACAAGAGACACCGTTATTGAGAACTTGAAAGCTAAAAATA
TTACTGTTGTGGCAGTAAGCTTCGGTACAGGTCTTGACAGATCGCCTCGT
CCATTTGAATGTGCATCTGGGAATGCAGGAACTGGGCAGGGAACTGCGAT
AGCAACCGCCACGGGGGGCGTTCTTCTTCCAAACACACAGCAAGCGAAAG
TAATTGAAGCCATCGAAAATGCAGTATTAAATTTGAATAGGACATATGAT
CTTGATTCTTCCGACTGCGATGGAAAACTGATAACCTCTACCAATCCAGC
TTTGCCGATTACTCTTGCTCCTAGAGACTCTCAAGTTGTGGACCAAATCA
TTGTGATTGAGTCTGGAGTGTGCACGGGAGGGGCTACTTTCGAGTGCACT
CTGAAGTACACTGAAGCTGGAGCAAGCCTTGCTCCCACGAGGCTCAAGTT
CTTGGATATTCAAGGCTGCCCAGAATTCTAA