Gchil3567.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gchil3567.t1
Unique Name	Gchil3567.t1
Type	mRNA
Organism	Gracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length	385

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00004378_pilon	contig	tig00004378_pilon:1408598..1409752 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria chilensis NLEC103_M9 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	78898.MVEG_04553T0
Max annot lvl	4751\|Fungi
Evalue	1.58e-11
EggNOG OGs	2E3H1@1\|root,2SAJC@2759\|Eukaryota,3ARBF@33154\|Opisthokonta,3PFVF@4751\|Fungi
Description	Allomyces macrogynus ATCC 38327
COG category	S

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gchil3567	Gchil3567	Gracilaria chilensis NLEC103_M9 male	gene	tig00004378_pilon 1408598..1409752 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil3567.t1.start1	Gchil3567.t1.start1	Gracilaria chilensis NLEC103_M9 male	start_codon	tig00004378_pilon 1408598..1408600 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil3567.t1.CDS1	Gchil3567.t1.CDS1	Gracilaria chilensis NLEC103_M9 male	CDS	tig00004378_pilon 1408598..1409752 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil3567.t1.exon1	Gchil3567.t1.exon1	Gracilaria chilensis NLEC103_M9 male	exon	tig00004378_pilon 1408598..1409752 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil3567.t1.stop1	Gchil3567.t1.stop1	Gracilaria chilensis NLEC103_M9 male	stop_codon	tig00004378_pilon 1409750..1409752 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil3567.t1	Gchil3567.t1	Gracilaria chilensis NLEC103_M9 male	polypeptide	tig00004378_pilon 1408598..1409752 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00004378_pilon:1408598..1409752+
coding sequence from alignment at tig00004378_pilon:1408598..1409752+

mRNA sequence

>Gchil3567.t1 ID=Gchil3567.t1|Name=Gchil3567.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=385bp
MHFVAFSSLLIAFLSAPCPTLAHQAIAYPWPISNDGACRLGKFKDCPGPC
PTIELRSDQTPDSPSLSVGRSQSITVNIKRNNHAGGFSRWSLVNVEDMYD
KKAHDRSAFLTTCGDQNITYCDSKNRLRDCTFDRSSKYYRHRVTIPRIYA
DGVYVLGWAWYGGTQGNGEFGDFGDYYDCMYIDIKGGPYEKYHQPTFEMG
SSDTGSAGKCKARTNFLGDCWREPCTHRKEASLAEPWEFSNGRKPDAISS
TAFKAPYRIKGIPKSAPKMIGISVRAADDPNIVLASSVTGPTGTISLKTN
SRITFTCDVSGDVDHVIFYRNGIPMSKATSAPFSIAGVYNTNDGQLKYHP
WKQHMDEEMYAMSCGVYGKDNSIQFAKLDVEQLL*

spliced messenger RNA

>Gchil3567.t1 ID=Gchil3567.t1|Name=Gchil3567.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1155bp|location=Sequence derived from alignment at tig00004378_pilon:1408598..1409752+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCATTTCGTTGCATTCAGTTCGTTGCTCATAGCTTTCCTTTCCGCACC
CTGTCCCACCTTGGCTCATCAAGCAATCGCATACCCGTGGCCCATATCAA
ATGACGGAGCATGTCGATTAGGAAAGTTCAAAGATTGCCCTGGTCCATGC
CCGACAATCGAACTTAGATCCGATCAAACTCCAGACAGTCCCTCACTCTC
TGTCGGTCGTTCCCAATCGATAACCGTCAATATCAAACGCAACAATCACG
CAGGGGGCTTTTCAAGATGGTCCCTTGTGAACGTTGAGGATATGTACGAC
AAGAAGGCGCACGACCGCAGTGCATTCTTGACCACTTGTGGCGACCAAAA
TATCACTTACTGTGACTCCAAAAATCGCCTACGTGATTGTACGTTTGACA
GATCGAGTAAGTATTATCGGCATCGGGTCACGATTCCCAGGATTTACGCA
GATGGTGTTTATGTGTTAGGGTGGGCCTGGTATGGCGGCACACAAGGAAA
TGGTGAGTTCGGTGATTTTGGAGATTACTACGATTGTATGTACATTGACA
TCAAAGGTGGACCCTACGAAAAGTATCATCAACCAACTTTTGAAATGGGC
TCTTCCGATACCGGTAGCGCCGGCAAGTGCAAAGCCAGAACAAATTTCTT
AGGTGATTGTTGGAGAGAACCGTGCACCCATCGTAAGGAGGCTTCTCTAG
CTGAACCATGGGAGTTTTCGAATGGTCGCAAACCGGATGCAATCTCAAGT
ACAGCTTTCAAAGCACCGTACAGAATCAAGGGGATTCCAAAATCTGCACC
GAAGATGATTGGAATATCTGTGCGTGCTGCTGACGATCCCAATATCGTTT
TAGCCAGTTCAGTTACCGGACCAACTGGAACTATTTCCCTCAAGACTAAC
TCTAGGATCACGTTCACATGTGATGTCTCCGGGGATGTTGATCATGTGAT
ATTCTATCGCAATGGCATTCCGATGAGCAAGGCCACATCGGCTCCCTTTA
GTATTGCAGGTGTGTACAATACAAATGACGGGCAGTTGAAGTATCACCCT
TGGAAACAACATATGGACGAAGAAATGTATGCAATGTCTTGTGGGGTTTA
TGGGAAGGACAACAGCATACAATTTGCAAAGCTTGATGTCGAGCAGCTAT
TGTAA

protein sequence of Gchil3567.t1

>Gchil3567.t1 ID=Gchil3567.t1|Name=Gchil3567.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=385bp
MHFVAFSSLLIAFLSAPCPTLAHQAIAYPWPISNDGACRLGKFKDCPGPC
PTIELRSDQTPDSPSLSVGRSQSITVNIKRNNHAGGFSRWSLVNVEDMYD
KKAHDRSAFLTTCGDQNITYCDSKNRLRDCTFDRSSKYYRHRVTIPRIYA
DGVYVLGWAWYGGTQGNGEFGDFGDYYDCMYIDIKGGPYEKYHQPTFEMG
SSDTGSAGKCKARTNFLGDCWREPCTHRKEASLAEPWEFSNGRKPDAISS
TAFKAPYRIKGIPKSAPKMIGISVRAADDPNIVLASSVTGPTGTISLKTN
SRITFTCDVSGDVDHVIFYRNGIPMSKATSAPFSIAGVYNTNDGQLKYHP
WKQHMDEEMYAMSCGVYGKDNSIQFAKLDVEQLL*

mRNA from alignment at tig00004378_pilon:1408598..1409752+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gchil3567.t1 ID=Gchil3567.t1|Name=Gchil3567.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1155bp|location=Sequence derived from alignment at tig00004378_pilon:1408598..1409752+ (Gracilaria chilensis NLEC103_M9 male)
ATGCATTTCGTTGCATTCAGTTCGTTGCTCATAGCTTTCCTTTCCGCACC
CTGTCCCACCTTGGCTCATCAAGCAATCGCATACCCGTGGCCCATATCAA
ATGACGGAGCATGTCGATTAGGAAAGTTCAAAGATTGCCCTGGTCCATGC
CCGACAATCGAACTTAGATCCGATCAAACTCCAGACAGTCCCTCACTCTC
TGTCGGTCGTTCCCAATCGATAACCGTCAATATCAAACGCAACAATCACG
CAGGGGGCTTTTCAAGATGGTCCCTTGTGAACGTTGAGGATATGTACGAC
AAGAAGGCGCACGACCGCAGTGCATTCTTGACCACTTGTGGCGACCAAAA
TATCACTTACTGTGACTCCAAAAATCGCCTACGTGATTGTACGTTTGACA
GATCGAGTAAGTATTATCGGCATCGGGTCACGATTCCCAGGATTTACGCA
GATGGTGTTTATGTGTTAGGGTGGGCCTGGTATGGCGGCACACAAGGAAA
TGGTGAGTTCGGTGATTTTGGAGATTACTACGATTGTATGTACATTGACA
TCAAAGGTGGACCCTACGAAAAGTATCATCAACCAACTTTTGAAATGGGC
TCTTCCGATACCGGTAGCGCCGGCAAGTGCAAAGCCAGAACAAATTTCTT
AGGTGATTGTTGGAGAGAACCGTGCACCCATCGTAAGGAGGCTTCTCTAG
CTGAACCATGGGAGTTTTCGAATGGTCGCAAACCGGATGCAATCTCAAGT
ACAGCTTTCAAAGCACCGTACAGAATCAAGGGGATTCCAAAATCTGCACC
GAAGATGATTGGAATATCTGTGCGTGCTGCTGACGATCCCAATATCGTTT
TAGCCAGTTCAGTTACCGGACCAACTGGAACTATTTCCCTCAAGACTAAC
TCTAGGATCACGTTCACATGTGATGTCTCCGGGGATGTTGATCATGTGAT
ATTCTATCGCAATGGCATTCCGATGAGCAAGGCCACATCGGCTCCCTTTA
GTATTGCAGGTGTGTACAATACAAATGACGGGCAGTTGAAGTATCACCCT
TGGAAACAACATATGGACGAAGAAATGTATGCAATGTCTTGTGGGGTTTA
TGGGAAGGACAACAGCATACAATTTGCAAAGCTTGATGTCGAGCAGCTAT
TGTAA

Coding sequence (CDS) from alignment at tig00004378_pilon:1408598..1409752+

>Gchil3567.t1 ID=Gchil3567.t1|Name=Gchil3567.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1155bp|location=Sequence derived from alignment at tig00004378_pilon:1408598..1409752+ (Gracilaria chilensis NLEC103_M9 male)
ATGCATTTCGTTGCATTCAGTTCGTTGCTCATAGCTTTCCTTTCCGCACC
CTGTCCCACCTTGGCTCATCAAGCAATCGCATACCCGTGGCCCATATCAA
ATGACGGAGCATGTCGATTAGGAAAGTTCAAAGATTGCCCTGGTCCATGC
CCGACAATCGAACTTAGATCCGATCAAACTCCAGACAGTCCCTCACTCTC
TGTCGGTCGTTCCCAATCGATAACCGTCAATATCAAACGCAACAATCACG
CAGGGGGCTTTTCAAGATGGTCCCTTGTGAACGTTGAGGATATGTACGAC
AAGAAGGCGCACGACCGCAGTGCATTCTTGACCACTTGTGGCGACCAAAA
TATCACTTACTGTGACTCCAAAAATCGCCTACGTGATTGTACGTTTGACA
GATCGAGTAAGTATTATCGGCATCGGGTCACGATTCCCAGGATTTACGCA
GATGGTGTTTATGTGTTAGGGTGGGCCTGGTATGGCGGCACACAAGGAAA
TGGTGAGTTCGGTGATTTTGGAGATTACTACGATTGTATGTACATTGACA
TCAAAGGTGGACCCTACGAAAAGTATCATCAACCAACTTTTGAAATGGGC
TCTTCCGATACCGGTAGCGCCGGCAAGTGCAAAGCCAGAACAAATTTCTT
AGGTGATTGTTGGAGAGAACCGTGCACCCATCGTAAGGAGGCTTCTCTAG
CTGAACCATGGGAGTTTTCGAATGGTCGCAAACCGGATGCAATCTCAAGT
ACAGCTTTCAAAGCACCGTACAGAATCAAGGGGATTCCAAAATCTGCACC
GAAGATGATTGGAATATCTGTGCGTGCTGCTGACGATCCCAATATCGTTT
TAGCCAGTTCAGTTACCGGACCAACTGGAACTATTTCCCTCAAGACTAAC
TCTAGGATCACGTTCACATGTGATGTCTCCGGGGATGTTGATCATGTGAT
ATTCTATCGCAATGGCATTCCGATGAGCAAGGCCACATCGGCTCCCTTTA
GTATTGCAGGTGTGTACAATACAAATGACGGGCAGTTGAAGTATCACCCT
TGGAAACAACATATGGACGAAGAAATGTATGCAATGTCTTGTGGGGTTTA
TGGGAAGGACAACAGCATACAATTTGCAAAGCTTGATGTCGAGCAGCTAT
TGTAA