Gchil3564.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gchil3564.t1
Unique Name	Gchil3564.t1
Type	mRNA
Organism	Gracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length	730

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00004378_pilon	contig	tig00004378_pilon:1353095..1355284 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria chilensis NLEC103_M9 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	130081.XP_005706938.1
PFAMs	Dynamin_M,Dynamin_N,GED
Max annot lvl	2759\|Eukaryota
KEGG ko	ko:K01528,ko:K17065
KEGG Pathway	ko04072,ko04139,ko04144,ko04214,ko04217,ko04621,ko04668,ko04721,ko04961,ko05100,map04072,map04139,map04144,map04214,map04217,map04621,map04668,map04721,map04961,map05100
Evalue	1.26e-215
EggNOG OGs	COG0699@1\|root,KOG0446@2759\|Eukaryota
EC	3.6.5.5
Description	mitochondrial fission
COG category	I
BRITE	ko00000,ko00001,ko01000,ko03029,ko04131,ko04147

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gchil3564	Gchil3564	Gracilaria chilensis NLEC103_M9 male	gene	tig00004378_pilon 1353095..1355284 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil3564.t1.start1	Gchil3564.t1.start1	Gracilaria chilensis NLEC103_M9 male	start_codon	tig00004378_pilon 1353095..1353097 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil3564.t1.CDS1	Gchil3564.t1.CDS1	Gracilaria chilensis NLEC103_M9 male	CDS	tig00004378_pilon 1353095..1355284 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil3564.t1.exon1	Gchil3564.t1.exon1	Gracilaria chilensis NLEC103_M9 male	exon	tig00004378_pilon 1353095..1355284 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil3564.t1.stop1	Gchil3564.t1.stop1	Gracilaria chilensis NLEC103_M9 male	stop_codon	tig00004378_pilon 1355282..1355284 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil3564.t1	Gchil3564.t1	Gracilaria chilensis NLEC103_M9 male	polypeptide	tig00004378_pilon 1353095..1355284 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00004378_pilon:1353095..1355284+
coding sequence from alignment at tig00004378_pilon:1353095..1355284+

mRNA sequence

>Gchil3564.t1 ID=Gchil3564.t1|Name=Gchil3564.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=730bp
MTVSHTAAMDRLLPVVNKLHNIFQRCGLADPIDLPQIVVVGAQSSGKSSV
LESIVGFDFLPRGAGVVTRSPILIQLNKVRTADGGSQRWVEFLHAPDRRF
GTEQEIQAEITKETERVAGKNKKLTPTAMIMKVFSTEVVDLTLIDLPGLT
KVPVGDQPQDIEKLVRAMIYSYIEKSNTIILAVHPANTDLATSDALQMAR
RVDPQGLRTLGVITKLDLMDAGTNALDMLLGRIIPLRRGYVGVVNRSQAD
LDTKATVTESRGAEKAFFQSHPVYAPYAAKMGSQYLAEMLSAMLLEHIRQ
VLPSIRTKITTQLSDVREQLAALGPELGGGDDSSGTLLHLLTNYASSFSD
AIDGRPKAPIATSELAGGARISYIFHDRFGRELSNMDPFDSLGPDEIRTA
LRNATGHRTPLFIPESAFEMLVKRQIRMFLEPALACVDMVYDELTRLAEV
VESPELERFHRLRIEVSETTLKLLRERKSPTIEMIHNLVEMEMSYINTWH
PDFVGGKQALAAIVEHAMATRTHALSEATANDVGLLGANKGTRYGHREVH
QDAWVEKNLLGQQSHSKQTRTASNSVADDTSRGPDPFFATSRRRGRTDAA
FARGLQDSFTVAEMQSVSTSSPVRVPRFEALSDDERQELEILRTLLESYF
NIVRKRLQDMVPKAIITFLVNKSKDTLQSVLVKKLYKPNAIEDLMVESPE
TMQRRKDMRAVEALLEQALSEVNEIRDVH*

spliced messenger RNA

>Gchil3564.t1 ID=Gchil3564.t1|Name=Gchil3564.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=2190bp|location=Sequence derived from alignment at tig00004378_pilon:1353095..1355284+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGACCGTGTCCCACACCGCTGCAATGGATCGGTTGCTGCCGGTTGTGAA
CAAGCTTCATAATATATTTCAAAGATGTGGACTTGCTGACCCAATTGATC
TTCCTCAGATCGTGGTGGTCGGAGCCCAGTCATCGGGTAAAAGCTCCGTT
CTGGAATCCATTGTCGGGTTCGACTTTCTTCCCCGCGGGGCCGGCGTCGT
GACGAGGAGCCCAATTCTAATCCAACTAAACAAGGTCAGAACAGCCGACG
GAGGTTCACAACGGTGGGTCGAATTTTTACATGCTCCCGATCGACGATTT
GGGACGGAACAAGAAATCCAAGCGGAGATCACCAAAGAAACCGAGCGAGT
CGCAGGAAAAAACAAAAAGCTTACGCCTACAGCCATGATCATGAAAGTCT
TTTCCACAGAAGTGGTTGACTTAACTCTCATTGATTTGCCCGGTCTCACA
AAGGTTCCCGTTGGCGACCAGCCTCAAGACATAGAAAAACTTGTGCGTGC
AATGATTTATTCGTACATCGAGAAGTCCAACACGATTATTTTAGCGGTTC
ATCCGGCCAATACCGACCTTGCTACATCGGATGCGTTGCAAATGGCGCGG
CGCGTCGATCCTCAAGGTCTGCGAACCCTCGGTGTCATCACTAAACTAGA
CCTCATGGATGCAGGTACTAACGCGCTTGATATGCTTCTTGGACGCATAA
TTCCTCTCCGCCGAGGCTATGTCGGAGTGGTTAACAGATCTCAGGCTGAC
TTAGACACAAAAGCTACTGTGACCGAATCCAGAGGCGCAGAGAAGGCTTT
CTTTCAAAGCCACCCTGTTTATGCCCCATACGCTGCAAAAATGGGTTCGC
AGTATCTCGCTGAAATGCTGAGTGCCATGCTACTGGAACATATCAGACAG
GTGTTACCATCAATTCGAACCAAAATCACGACCCAACTTTCTGATGTGAG
GGAGCAACTGGCCGCATTGGGTCCGGAACTTGGCGGCGGGGACGATTCAA
GTGGAACTTTGCTCCACCTTTTGACGAACTACGCCTCTAGCTTTTCAGAC
GCCATTGATGGTCGTCCAAAGGCCCCAATTGCGACCAGCGAACTTGCAGG
TGGTGCCCGTATCAGCTACATATTCCACGACCGATTTGGAAGGGAACTAT
CCAACATGGACCCATTCGATTCGTTGGGACCTGACGAAATTAGAACGGCT
CTAAGGAATGCAACCGGACACCGTACTCCATTGTTCATTCCAGAGTCCGC
TTTCGAAATGTTAGTGAAGCGACAAATCCGTATGTTCTTGGAACCGGCGC
TGGCGTGCGTTGATATGGTGTACGATGAGCTAACTCGCCTAGCAGAAGTT
GTTGAGAGCCCTGAGCTAGAAAGATTTCACCGTCTCCGTATAGAAGTATC
TGAGACGACTTTGAAATTGTTAAGAGAGCGAAAGTCACCAACTATTGAAA
TGATCCACAATTTAGTGGAAATGGAGATGAGCTACATAAATACATGGCAT
CCAGATTTTGTAGGAGGGAAGCAAGCATTGGCCGCAATTGTAGAACATGC
TATGGCAACCAGGACACATGCATTGTCAGAAGCCACCGCGAATGACGTTG
GTCTGCTCGGAGCAAATAAAGGAACAAGATACGGTCATCGTGAAGTTCAT
CAAGATGCTTGGGTTGAAAAGAATTTGTTAGGGCAACAATCGCATTCCAA
ACAGACTCGGACAGCCTCGAATAGTGTCGCAGATGATACCAGTCGTGGCC
CAGATCCCTTTTTTGCGACGAGTCGGCGAAGAGGGCGAACGGATGCTGCT
TTTGCAAGAGGGTTGCAAGATAGTTTTACAGTTGCAGAAATGCAGAGCGT
TTCTACGTCCAGCCCGGTGCGTGTTCCGAGGTTCGAAGCCCTATCGGATG
ATGAAAGACAAGAACTTGAGATACTGCGCACTTTGCTAGAGAGCTATTTC
AACATTGTACGAAAAAGACTTCAGGACATGGTTCCCAAGGCGATCATCAC
ATTTTTGGTTAACAAATCAAAAGACACACTGCAATCTGTGCTGGTCAAAA
AGCTGTACAAGCCAAATGCAATTGAAGATCTAATGGTGGAATCCCCAGAA
ACCATGCAAAGGCGGAAGGACATGAGAGCGGTCGAAGCTCTGCTGGAGCA
GGCGCTGAGTGAAGTGAATGAGATTCGAGATGTGCACTGA

protein sequence of Gchil3564.t1

>Gchil3564.t1 ID=Gchil3564.t1|Name=Gchil3564.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=730bp
MTVSHTAAMDRLLPVVNKLHNIFQRCGLADPIDLPQIVVVGAQSSGKSSV
LESIVGFDFLPRGAGVVTRSPILIQLNKVRTADGGSQRWVEFLHAPDRRF
GTEQEIQAEITKETERVAGKNKKLTPTAMIMKVFSTEVVDLTLIDLPGLT
KVPVGDQPQDIEKLVRAMIYSYIEKSNTIILAVHPANTDLATSDALQMAR
RVDPQGLRTLGVITKLDLMDAGTNALDMLLGRIIPLRRGYVGVVNRSQAD
LDTKATVTESRGAEKAFFQSHPVYAPYAAKMGSQYLAEMLSAMLLEHIRQ
VLPSIRTKITTQLSDVREQLAALGPELGGGDDSSGTLLHLLTNYASSFSD
AIDGRPKAPIATSELAGGARISYIFHDRFGRELSNMDPFDSLGPDEIRTA
LRNATGHRTPLFIPESAFEMLVKRQIRMFLEPALACVDMVYDELTRLAEV
VESPELERFHRLRIEVSETTLKLLRERKSPTIEMIHNLVEMEMSYINTWH
PDFVGGKQALAAIVEHAMATRTHALSEATANDVGLLGANKGTRYGHREVH
QDAWVEKNLLGQQSHSKQTRTASNSVADDTSRGPDPFFATSRRRGRTDAA
FARGLQDSFTVAEMQSVSTSSPVRVPRFEALSDDERQELEILRTLLESYF
NIVRKRLQDMVPKAIITFLVNKSKDTLQSVLVKKLYKPNAIEDLMVESPE
TMQRRKDMRAVEALLEQALSEVNEIRDVH*

mRNA from alignment at tig00004378_pilon:1353095..1355284+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gchil3564.t1 ID=Gchil3564.t1|Name=Gchil3564.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=2190bp|location=Sequence derived from alignment at tig00004378_pilon:1353095..1355284+ (Gracilaria chilensis NLEC103_M9 male)
ATGACCGTGTCCCACACCGCTGCAATGGATCGGTTGCTGCCGGTTGTGAA
CAAGCTTCATAATATATTTCAAAGATGTGGACTTGCTGACCCAATTGATC
TTCCTCAGATCGTGGTGGTCGGAGCCCAGTCATCGGGTAAAAGCTCCGTT
CTGGAATCCATTGTCGGGTTCGACTTTCTTCCCCGCGGGGCCGGCGTCGT
GACGAGGAGCCCAATTCTAATCCAACTAAACAAGGTCAGAACAGCCGACG
GAGGTTCACAACGGTGGGTCGAATTTTTACATGCTCCCGATCGACGATTT
GGGACGGAACAAGAAATCCAAGCGGAGATCACCAAAGAAACCGAGCGAGT
CGCAGGAAAAAACAAAAAGCTTACGCCTACAGCCATGATCATGAAAGTCT
TTTCCACAGAAGTGGTTGACTTAACTCTCATTGATTTGCCCGGTCTCACA
AAGGTTCCCGTTGGCGACCAGCCTCAAGACATAGAAAAACTTGTGCGTGC
AATGATTTATTCGTACATCGAGAAGTCCAACACGATTATTTTAGCGGTTC
ATCCGGCCAATACCGACCTTGCTACATCGGATGCGTTGCAAATGGCGCGG
CGCGTCGATCCTCAAGGTCTGCGAACCCTCGGTGTCATCACTAAACTAGA
CCTCATGGATGCAGGTACTAACGCGCTTGATATGCTTCTTGGACGCATAA
TTCCTCTCCGCCGAGGCTATGTCGGAGTGGTTAACAGATCTCAGGCTGAC
TTAGACACAAAAGCTACTGTGACCGAATCCAGAGGCGCAGAGAAGGCTTT
CTTTCAAAGCCACCCTGTTTATGCCCCATACGCTGCAAAAATGGGTTCGC
AGTATCTCGCTGAAATGCTGAGTGCCATGCTACTGGAACATATCAGACAG
GTGTTACCATCAATTCGAACCAAAATCACGACCCAACTTTCTGATGTGAG
GGAGCAACTGGCCGCATTGGGTCCGGAACTTGGCGGCGGGGACGATTCAA
GTGGAACTTTGCTCCACCTTTTGACGAACTACGCCTCTAGCTTTTCAGAC
GCCATTGATGGTCGTCCAAAGGCCCCAATTGCGACCAGCGAACTTGCAGG
TGGTGCCCGTATCAGCTACATATTCCACGACCGATTTGGAAGGGAACTAT
CCAACATGGACCCATTCGATTCGTTGGGACCTGACGAAATTAGAACGGCT
CTAAGGAATGCAACCGGACACCGTACTCCATTGTTCATTCCAGAGTCCGC
TTTCGAAATGTTAGTGAAGCGACAAATCCGTATGTTCTTGGAACCGGCGC
TGGCGTGCGTTGATATGGTGTACGATGAGCTAACTCGCCTAGCAGAAGTT
GTTGAGAGCCCTGAGCTAGAAAGATTTCACCGTCTCCGTATAGAAGTATC
TGAGACGACTTTGAAATTGTTAAGAGAGCGAAAGTCACCAACTATTGAAA
TGATCCACAATTTAGTGGAAATGGAGATGAGCTACATAAATACATGGCAT
CCAGATTTTGTAGGAGGGAAGCAAGCATTGGCCGCAATTGTAGAACATGC
TATGGCAACCAGGACACATGCATTGTCAGAAGCCACCGCGAATGACGTTG
GTCTGCTCGGAGCAAATAAAGGAACAAGATACGGTCATCGTGAAGTTCAT
CAAGATGCTTGGGTTGAAAAGAATTTGTTAGGGCAACAATCGCATTCCAA
ACAGACTCGGACAGCCTCGAATAGTGTCGCAGATGATACCAGTCGTGGCC
CAGATCCCTTTTTTGCGACGAGTCGGCGAAGAGGGCGAACGGATGCTGCT
TTTGCAAGAGGGTTGCAAGATAGTTTTACAGTTGCAGAAATGCAGAGCGT
TTCTACGTCCAGCCCGGTGCGTGTTCCGAGGTTCGAAGCCCTATCGGATG
ATGAAAGACAAGAACTTGAGATACTGCGCACTTTGCTAGAGAGCTATTTC
AACATTGTACGAAAAAGACTTCAGGACATGGTTCCCAAGGCGATCATCAC
ATTTTTGGTTAACAAATCAAAAGACACACTGCAATCTGTGCTGGTCAAAA
AGCTGTACAAGCCAAATGCAATTGAAGATCTAATGGTGGAATCCCCAGAA
ACCATGCAAAGGCGGAAGGACATGAGAGCGGTCGAAGCTCTGCTGGAGCA
GGCGCTGAGTGAAGTGAATGAGATTCGAGATGTGCACTGA

Coding sequence (CDS) from alignment at tig00004378_pilon:1353095..1355284+

>Gchil3564.t1 ID=Gchil3564.t1|Name=Gchil3564.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=2190bp|location=Sequence derived from alignment at tig00004378_pilon:1353095..1355284+ (Gracilaria chilensis NLEC103_M9 male)
ATGACCGTGTCCCACACCGCTGCAATGGATCGGTTGCTGCCGGTTGTGAA
CAAGCTTCATAATATATTTCAAAGATGTGGACTTGCTGACCCAATTGATC
TTCCTCAGATCGTGGTGGTCGGAGCCCAGTCATCGGGTAAAAGCTCCGTT
CTGGAATCCATTGTCGGGTTCGACTTTCTTCCCCGCGGGGCCGGCGTCGT
GACGAGGAGCCCAATTCTAATCCAACTAAACAAGGTCAGAACAGCCGACG
GAGGTTCACAACGGTGGGTCGAATTTTTACATGCTCCCGATCGACGATTT
GGGACGGAACAAGAAATCCAAGCGGAGATCACCAAAGAAACCGAGCGAGT
CGCAGGAAAAAACAAAAAGCTTACGCCTACAGCCATGATCATGAAAGTCT
TTTCCACAGAAGTGGTTGACTTAACTCTCATTGATTTGCCCGGTCTCACA
AAGGTTCCCGTTGGCGACCAGCCTCAAGACATAGAAAAACTTGTGCGTGC
AATGATTTATTCGTACATCGAGAAGTCCAACACGATTATTTTAGCGGTTC
ATCCGGCCAATACCGACCTTGCTACATCGGATGCGTTGCAAATGGCGCGG
CGCGTCGATCCTCAAGGTCTGCGAACCCTCGGTGTCATCACTAAACTAGA
CCTCATGGATGCAGGTACTAACGCGCTTGATATGCTTCTTGGACGCATAA
TTCCTCTCCGCCGAGGCTATGTCGGAGTGGTTAACAGATCTCAGGCTGAC
TTAGACACAAAAGCTACTGTGACCGAATCCAGAGGCGCAGAGAAGGCTTT
CTTTCAAAGCCACCCTGTTTATGCCCCATACGCTGCAAAAATGGGTTCGC
AGTATCTCGCTGAAATGCTGAGTGCCATGCTACTGGAACATATCAGACAG
GTGTTACCATCAATTCGAACCAAAATCACGACCCAACTTTCTGATGTGAG
GGAGCAACTGGCCGCATTGGGTCCGGAACTTGGCGGCGGGGACGATTCAA
GTGGAACTTTGCTCCACCTTTTGACGAACTACGCCTCTAGCTTTTCAGAC
GCCATTGATGGTCGTCCAAAGGCCCCAATTGCGACCAGCGAACTTGCAGG
TGGTGCCCGTATCAGCTACATATTCCACGACCGATTTGGAAGGGAACTAT
CCAACATGGACCCATTCGATTCGTTGGGACCTGACGAAATTAGAACGGCT
CTAAGGAATGCAACCGGACACCGTACTCCATTGTTCATTCCAGAGTCCGC
TTTCGAAATGTTAGTGAAGCGACAAATCCGTATGTTCTTGGAACCGGCGC
TGGCGTGCGTTGATATGGTGTACGATGAGCTAACTCGCCTAGCAGAAGTT
GTTGAGAGCCCTGAGCTAGAAAGATTTCACCGTCTCCGTATAGAAGTATC
TGAGACGACTTTGAAATTGTTAAGAGAGCGAAAGTCACCAACTATTGAAA
TGATCCACAATTTAGTGGAAATGGAGATGAGCTACATAAATACATGGCAT
CCAGATTTTGTAGGAGGGAAGCAAGCATTGGCCGCAATTGTAGAACATGC
TATGGCAACCAGGACACATGCATTGTCAGAAGCCACCGCGAATGACGTTG
GTCTGCTCGGAGCAAATAAAGGAACAAGATACGGTCATCGTGAAGTTCAT
CAAGATGCTTGGGTTGAAAAGAATTTGTTAGGGCAACAATCGCATTCCAA
ACAGACTCGGACAGCCTCGAATAGTGTCGCAGATGATACCAGTCGTGGCC
CAGATCCCTTTTTTGCGACGAGTCGGCGAAGAGGGCGAACGGATGCTGCT
TTTGCAAGAGGGTTGCAAGATAGTTTTACAGTTGCAGAAATGCAGAGCGT
TTCTACGTCCAGCCCGGTGCGTGTTCCGAGGTTCGAAGCCCTATCGGATG
ATGAAAGACAAGAACTTGAGATACTGCGCACTTTGCTAGAGAGCTATTTC
AACATTGTACGAAAAAGACTTCAGGACATGGTTCCCAAGGCGATCATCAC
ATTTTTGGTTAACAAATCAAAAGACACACTGCAATCTGTGCTGGTCAAAA
AGCTGTACAAGCCAAATGCAATTGAAGATCTAATGGTGGAATCCCCAGAA
ACCATGCAAAGGCGGAAGGACATGAGAGCGGTCGAAGCTCTGCTGGAGCA
GGCGCTGAGTGAAGTGAATGAGATTCGAGATGTGCACTGA