Gchil3563.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil3563.t1
Unique NameGchil3563.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length310
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004378_piloncontigtig00004378_pilon:1351561..1352490 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog2903.EOD07330
Preferred nameSurf2
PFAMsSURF2
Max annot lvl2759|Eukaryota
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005730,GO:0005886,GO:0016020,GO:0016604,GO:0016607,GO:0031974,GO:0031981,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044451,GO:0044464,GO:0070013,GO:0071944
Evalue1.67e-15
EggNOG OGs2A8IF@1|root,2QW1X@2759|Eukaryota
DescriptionSurfeit locus protein 2 (SURF2)
COG categoryS
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil3563Gchil3563Gracilaria chilensis NLEC103_M9 malegenetig00004378_pilon 1351561..1352490 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3563.t1.stop1Gchil3563.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004378_pilon 1351561..1351563 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3563.t1.CDS1Gchil3563.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004378_pilon 1351561..1352490 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3563.t1.exon1Gchil3563.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004378_pilon 1351561..1352490 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3563.t1.start1Gchil3563.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004378_pilon 1352488..1352490 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3563.t1Gchil3563.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004378_pilon 1351561..1352490 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil3563.t1 ID=Gchil3563.t1|Name=Gchil3563.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=310bp
MMPKSDVVRYAGQHPSTTTLLPSGKLRFTQTGMEFPAHADTKTLKVYARG
RAYRRALVKKMNEGYDFEQHLPYIVPHKYRDKKHFLYCTLTNKTLPRQKD
VVLNHTNGRRFKRRYEEAEKERKKTETRIEKQEKKAVAMMKSTDPLLGGK
QAEGRDDDIMRNGHVQDVLAGLLSSDSESEQEDVEMGDAENAESKTADVS
EEEQDGFQKVDQRNGENLEPMADNSSQEELQRHDTRSHKTHGKRSPSGVQ
RTLIRAATGTSSERTPSSVKARAFASKKRRRPKTPIPKKMRQARQKRKAE
GTATVEDDE*
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spliced messenger RNA

>Gchil3563.t1 ID=Gchil3563.t1|Name=Gchil3563.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=930bp|location=Sequence derived from alignment at tig00004378_pilon:1351561..1352490- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGATGCCCAAATCTGACGTGGTGCGCTATGCAGGACAGCACCCAAGTAC
TACGACTCTGCTGCCGAGTGGGAAATTGCGCTTCACACAGACTGGCATGG
AGTTCCCCGCCCATGCCGACACCAAAACTTTGAAAGTATACGCAAGAGGG
AGAGCCTATCGCCGCGCTCTGGTGAAAAAAATGAACGAAGGGTATGATTT
TGAACAGCATCTACCATACATTGTTCCTCATAAATATCGCGATAAGAAGC
ATTTTCTGTACTGCACATTGACGAACAAGACTTTGCCCCGTCAGAAGGAT
GTAGTTTTAAACCATACTAATGGCAGGAGGTTCAAACGGAGATACGAGGA
GGCAGAGAAAGAAAGAAAGAAGACGGAAACTCGAATAGAGAAACAGGAAA
AGAAAGCAGTTGCTATGATGAAGAGCACGGATCCACTGCTTGGAGGAAAA
CAGGCTGAAGGGCGCGACGACGATATTATGAGAAATGGCCATGTGCAAGA
CGTGTTGGCTGGTCTCTTGTCAAGCGATAGTGAAAGTGAACAAGAAGACG
TTGAAATGGGCGATGCAGAGAACGCCGAATCGAAAACAGCTGATGTATCG
GAAGAGGAACAAGATGGGTTTCAGAAAGTAGACCAGAGAAACGGTGAAAA
TCTGGAGCCCATGGCGGACAATTCTTCGCAGGAAGAGTTGCAGCGTCACG
ACACTCGCTCCCACAAAACTCATGGGAAAAGATCCCCAAGTGGCGTGCAA
CGAACGTTGATTAGGGCAGCGACGGGAACCAGCAGTGAAAGGACACCGTC
ATCGGTAAAGGCTCGAGCATTTGCATCAAAGAAGCGCCGTCGACCGAAAA
CGCCCATCCCTAAAAAGATGAGGCAAGCAAGACAAAAAAGGAAAGCAGAG
GGTACGGCCACTGTTGAAGATGATGAGTAG
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protein sequence of Gchil3563.t1

>Gchil3563.t1 ID=Gchil3563.t1|Name=Gchil3563.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=310bp
MMPKSDVVRYAGQHPSTTTLLPSGKLRFTQTGMEFPAHADTKTLKVYARG
RAYRRALVKKMNEGYDFEQHLPYIVPHKYRDKKHFLYCTLTNKTLPRQKD
VVLNHTNGRRFKRRYEEAEKERKKTETRIEKQEKKAVAMMKSTDPLLGGK
QAEGRDDDIMRNGHVQDVLAGLLSSDSESEQEDVEMGDAENAESKTADVS
EEEQDGFQKVDQRNGENLEPMADNSSQEELQRHDTRSHKTHGKRSPSGVQ
RTLIRAATGTSSERTPSSVKARAFASKKRRRPKTPIPKKMRQARQKRKAE
GTATVEDDE*
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mRNA from alignment at tig00004378_pilon:1351561..1352490-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil3563.t1 ID=Gchil3563.t1|Name=Gchil3563.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=930bp|location=Sequence derived from alignment at tig00004378_pilon:1351561..1352490- (Gracilaria chilensis NLEC103_M9 male)
ATGATGCCCAAATCTGACGTGGTGCGCTATGCAGGACAGCACCCAAGTAC
TACGACTCTGCTGCCGAGTGGGAAATTGCGCTTCACACAGACTGGCATGG
AGTTCCCCGCCCATGCCGACACCAAAACTTTGAAAGTATACGCAAGAGGG
AGAGCCTATCGCCGCGCTCTGGTGAAAAAAATGAACGAAGGGTATGATTT
TGAACAGCATCTACCATACATTGTTCCTCATAAATATCGCGATAAGAAGC
ATTTTCTGTACTGCACATTGACGAACAAGACTTTGCCCCGTCAGAAGGAT
GTAGTTTTAAACCATACTAATGGCAGGAGGTTCAAACGGAGATACGAGGA
GGCAGAGAAAGAAAGAAAGAAGACGGAAACTCGAATAGAGAAACAGGAAA
AGAAAGCAGTTGCTATGATGAAGAGCACGGATCCACTGCTTGGAGGAAAA
CAGGCTGAAGGGCGCGACGACGATATTATGAGAAATGGCCATGTGCAAGA
CGTGTTGGCTGGTCTCTTGTCAAGCGATAGTGAAAGTGAACAAGAAGACG
TTGAAATGGGCGATGCAGAGAACGCCGAATCGAAAACAGCTGATGTATCG
GAAGAGGAACAAGATGGGTTTCAGAAAGTAGACCAGAGAAACGGTGAAAA
TCTGGAGCCCATGGCGGACAATTCTTCGCAGGAAGAGTTGCAGCGTCACG
ACACTCGCTCCCACAAAACTCATGGGAAAAGATCCCCAAGTGGCGTGCAA
CGAACGTTGATTAGGGCAGCGACGGGAACCAGCAGTGAAAGGACACCGTC
ATCGGTAAAGGCTCGAGCATTTGCATCAAAGAAGCGCCGTCGACCGAAAA
CGCCCATCCCTAAAAAGATGAGGCAAGCAAGACAAAAAAGGAAAGCAGAG
GGTACGGCCACTGTTGAAGATGATGAGTAG
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Coding sequence (CDS) from alignment at tig00004378_pilon:1351561..1352490-

>Gchil3563.t1 ID=Gchil3563.t1|Name=Gchil3563.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=930bp|location=Sequence derived from alignment at tig00004378_pilon:1351561..1352490- (Gracilaria chilensis NLEC103_M9 male)
ATGATGCCCAAATCTGACGTGGTGCGCTATGCAGGACAGCACCCAAGTAC
TACGACTCTGCTGCCGAGTGGGAAATTGCGCTTCACACAGACTGGCATGG
AGTTCCCCGCCCATGCCGACACCAAAACTTTGAAAGTATACGCAAGAGGG
AGAGCCTATCGCCGCGCTCTGGTGAAAAAAATGAACGAAGGGTATGATTT
TGAACAGCATCTACCATACATTGTTCCTCATAAATATCGCGATAAGAAGC
ATTTTCTGTACTGCACATTGACGAACAAGACTTTGCCCCGTCAGAAGGAT
GTAGTTTTAAACCATACTAATGGCAGGAGGTTCAAACGGAGATACGAGGA
GGCAGAGAAAGAAAGAAAGAAGACGGAAACTCGAATAGAGAAACAGGAAA
AGAAAGCAGTTGCTATGATGAAGAGCACGGATCCACTGCTTGGAGGAAAA
CAGGCTGAAGGGCGCGACGACGATATTATGAGAAATGGCCATGTGCAAGA
CGTGTTGGCTGGTCTCTTGTCAAGCGATAGTGAAAGTGAACAAGAAGACG
TTGAAATGGGCGATGCAGAGAACGCCGAATCGAAAACAGCTGATGTATCG
GAAGAGGAACAAGATGGGTTTCAGAAAGTAGACCAGAGAAACGGTGAAAA
TCTGGAGCCCATGGCGGACAATTCTTCGCAGGAAGAGTTGCAGCGTCACG
ACACTCGCTCCCACAAAACTCATGGGAAAAGATCCCCAAGTGGCGTGCAA
CGAACGTTGATTAGGGCAGCGACGGGAACCAGCAGTGAAAGGACACCGTC
ATCGGTAAAGGCTCGAGCATTTGCATCAAAGAAGCGCCGTCGACCGAAAA
CGCCCATCCCTAAAAAGATGAGGCAAGCAAGACAAAAAAGGAAAGCAGAG
GGTACGGCCACTGTTGAAGATGATGAGTAG
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