Gchil3562.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil3562.t1
Unique NameGchil3562.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length530
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004378_piloncontigtig00004378_pilon:1349119..1350708 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil3562Gchil3562Gracilaria chilensis NLEC103_M9 malegenetig00004378_pilon 1349119..1350708 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3562.t1.start1Gchil3562.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004378_pilon 1349119..1349121 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3562.t1.CDS1Gchil3562.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004378_pilon 1349119..1350708 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3562.t1.exon1Gchil3562.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004378_pilon 1349119..1350708 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3562.t1.stop1Gchil3562.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004378_pilon 1350706..1350708 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3562.t1Gchil3562.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004378_pilon 1349119..1350708 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil3562.t1 ID=Gchil3562.t1|Name=Gchil3562.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=530bp
MARRFPHKDLAAVDRNARRRLYDAVKVMSAVGTIHKFAKKLKWLGVRHLH
ADVPDMRRMIRTKKSALLSKQRALQHIVRSITHFRRLLAHRRTRSSRLPC
AQHCSRFYFPFVLLRCSTPNVSSSPDRTRLTIHMNHPFSLFSETDIVSML
HPTSPASRLHSHPCARSVPLPVQTLSSPSSPTASNPTSHPTSPIRPPQQK
TLIMMRLKDHVGLKTEPVPLTRVPHPPRTSSAVHGAEPASPTQPHYGAHH
QHRHHPRLIEQSLHALEPMPPPPPPLPPPLQHPCVKLTLRLRPSNIKIAP
KPHRCAHIAHRQPCSHCASPPPQLASMSEQRASYPRSTVDRSSIWAALVD
EVAGKRSNSSPHNNNSLNKHPVQKTIVKNDHARRHGAHTGCRTVVEPNIS
ASAMQVMEEELICYINDGQVDEPQQETQEHADKQPSKQEIDLLCYEQLDF
ESLAEVADQQQARVMANPPPLFCPPLHVEPVIVSFDEEHNASRSEIVPYH
TRPVNEDDLLDLDIDMDVVSDPCLSDGVS*
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spliced messenger RNA

>Gchil3562.t1 ID=Gchil3562.t1|Name=Gchil3562.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1590bp|location=Sequence derived from alignment at tig00004378_pilon:1349119..1350708+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCCCGTCGCTTCCCGCACAAGGACTTGGCCGCCGTCGATCGCAACGC
CCGCCGCCGTCTCTATGACGCCGTCAAAGTCATGAGCGCTGTCGGCACCA
TTCACAAGTTCGCCAAAAAGCTCAAGTGGCTCGGTGTGCGCCATCTGCAC
GCCGATGTGCCCGATATGAGACGCATGATTCGCACCAAAAAGTCCGCTTT
GCTCTCTAAGCAACGCGCTCTTCAGCACATTGTGCGGTCCATCACCCACT
TTCGACGCCTTTTGGCGCACAGAAGAACCCGCTCTTCGCGCCTGCCCTGT
GCCCAACACTGCTCTCGCTTCTACTTTCCCTTCGTTCTTCTTCGCTGCTC
CACCCCCAACGTATCATCTTCGCCCGATCGCACACGTCTCACCATACACA
TGAACCACCCTTTCTCGCTTTTCTCAGAGACCGATATTGTCTCCATGCTT
CATCCAACTTCTCCTGCTTCCCGTCTCCATTCCCACCCTTGTGCCCGTTC
CGTGCCACTACCTGTCCAAACCCTCTCCTCTCCTTCTTCTCCCACCGCTT
CCAATCCCACATCGCACCCTACGTCCCCCATCCGCCCGCCGCAACAAAAA
ACGCTAATCATGATGCGACTCAAGGACCACGTTGGGCTCAAAACTGAACC
CGTCCCACTCACCCGCGTTCCTCATCCACCCCGTACGTCATCCGCTGTGC
ACGGAGCAGAGCCCGCGTCGCCCACCCAGCCCCACTACGGCGCGcaccac
caacaccgccaccatccacGCCTCATCGAGCAATCTCTGCATGCACTGGA
GCCCATgccaccgccgccgccgccgctgccgccgccgctgcagcACCCAT
GTGTTAAGCTCACGTTGCGCCTCCGCCCCTCAAATATCAAAATCGCCCCA
AAACCACATCGCTGCGCACACATCGCCCATCGCCAACCGTGTAGCCATTG
CGCTTCTCCTCCGCCTCAGCTAGCCTCCATGTCAGAACAACGCGCTTCCT
ATCCGCGCTCAACTGTCGATCGCTCCTCAATATGGGCTGCCCTCGTGGAT
GAGGTGGCTGGAAAACGCTCAAACTCTTCGCCGCACAACAACAACTCCCT
GAATAAACACCCCGTGCAAAAAACAATTGTCAAGAACGATCACGCTCGTC
GACATGGCGCGCACACCGGTTGTCGCACCGTCGTCGAACCGAACATCAGT
GCTAGCGCGATGCAAGTCATGGAGGAGGAGCTCATTTGTTATATCAACGA
TGGGCAAGTTGACGAGCCGCAGCAAGAGACACAGGAGCACGCTGACAAAC
AACCCTCGAAGCAAGAGATTGATCTTCTTTGCTACGAGCAACTCGATTTC
GAATCTCTGGCTGAAGTCGCTGATCAGCAACAGGCTCGTGTCATGGCAAA
CCCCCCACCTCTGTTCTGCCCGCCGCTGCATGTGGAACCTGTGATCGTCT
CTTTTGATGAAGAGCACAACGCCAGTCGCTCGGAGATTGTGCCGTATCAC
ACTCGTCCTGTGAATGAGGACGACTTGTTGGACCTTGACATAGACATGGA
TGTGGTATCCGACCCATGTCTTTCGGATGGTGTTTCATAA
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protein sequence of Gchil3562.t1

>Gchil3562.t1 ID=Gchil3562.t1|Name=Gchil3562.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=530bp
MARRFPHKDLAAVDRNARRRLYDAVKVMSAVGTIHKFAKKLKWLGVRHLH
ADVPDMRRMIRTKKSALLSKQRALQHIVRSITHFRRLLAHRRTRSSRLPC
AQHCSRFYFPFVLLRCSTPNVSSSPDRTRLTIHMNHPFSLFSETDIVSML
HPTSPASRLHSHPCARSVPLPVQTLSSPSSPTASNPTSHPTSPIRPPQQK
TLIMMRLKDHVGLKTEPVPLTRVPHPPRTSSAVHGAEPASPTQPHYGAHH
QHRHHPRLIEQSLHALEPMPPPPPPLPPPLQHPCVKLTLRLRPSNIKIAP
KPHRCAHIAHRQPCSHCASPPPQLASMSEQRASYPRSTVDRSSIWAALVD
EVAGKRSNSSPHNNNSLNKHPVQKTIVKNDHARRHGAHTGCRTVVEPNIS
ASAMQVMEEELICYINDGQVDEPQQETQEHADKQPSKQEIDLLCYEQLDF
ESLAEVADQQQARVMANPPPLFCPPLHVEPVIVSFDEEHNASRSEIVPYH
TRPVNEDDLLDLDIDMDVVSDPCLSDGVS*
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mRNA from alignment at tig00004378_pilon:1349119..1350708+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil3562.t1 ID=Gchil3562.t1|Name=Gchil3562.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1590bp|location=Sequence derived from alignment at tig00004378_pilon:1349119..1350708+ (Gracilaria chilensis NLEC103_M9 male)
ATGGCCCGTCGCTTCCCGCACAAGGACTTGGCCGCCGTCGATCGCAACGC
CCGCCGCCGTCTCTATGACGCCGTCAAAGTCATGAGCGCTGTCGGCACCA
TTCACAAGTTCGCCAAAAAGCTCAAGTGGCTCGGTGTGCGCCATCTGCAC
GCCGATGTGCCCGATATGAGACGCATGATTCGCACCAAAAAGTCCGCTTT
GCTCTCTAAGCAACGCGCTCTTCAGCACATTGTGCGGTCCATCACCCACT
TTCGACGCCTTTTGGCGCACAGAAGAACCCGCTCTTCGCGCCTGCCCTGT
GCCCAACACTGCTCTCGCTTCTACTTTCCCTTCGTTCTTCTTCGCTGCTC
CACCCCCAACGTATCATCTTCGCCCGATCGCACACGTCTCACCATACACA
TGAACCACCCTTTCTCGCTTTTCTCAGAGACCGATATTGTCTCCATGCTT
CATCCAACTTCTCCTGCTTCCCGTCTCCATTCCCACCCTTGTGCCCGTTC
CGTGCCACTACCTGTCCAAACCCTCTCCTCTCCTTCTTCTCCCACCGCTT
CCAATCCCACATCGCACCCTACGTCCCCCATCCGCCCGCCGCAACAAAAA
ACGCTAATCATGATGCGACTCAAGGACCACGTTGGGCTCAAAACTGAACC
CGTCCCACTCACCCGCGTTCCTCATCCACCCCGTACGTCATCCGCTGTGC
ACGGAGCAGAGCCCGCGTCGCCCACCCAGCCCCACTACGGCGCGcaccac
caacaccgccaccatccacGCCTCATCGAGCAATCTCTGCATGCACTGGA
GCCCATgccaccgccgccgccgccgctgccgccgccgctgcagcACCCAT
GTGTTAAGCTCACGTTGCGCCTCCGCCCCTCAAATATCAAAATCGCCCCA
AAACCACATCGCTGCGCACACATCGCCCATCGCCAACCGTGTAGCCATTG
CGCTTCTCCTCCGCCTCAGCTAGCCTCCATGTCAGAACAACGCGCTTCCT
ATCCGCGCTCAACTGTCGATCGCTCCTCAATATGGGCTGCCCTCGTGGAT
GAGGTGGCTGGAAAACGCTCAAACTCTTCGCCGCACAACAACAACTCCCT
GAATAAACACCCCGTGCAAAAAACAATTGTCAAGAACGATCACGCTCGTC
GACATGGCGCGCACACCGGTTGTCGCACCGTCGTCGAACCGAACATCAGT
GCTAGCGCGATGCAAGTCATGGAGGAGGAGCTCATTTGTTATATCAACGA
TGGGCAAGTTGACGAGCCGCAGCAAGAGACACAGGAGCACGCTGACAAAC
AACCCTCGAAGCAAGAGATTGATCTTCTTTGCTACGAGCAACTCGATTTC
GAATCTCTGGCTGAAGTCGCTGATCAGCAACAGGCTCGTGTCATGGCAAA
CCCCCCACCTCTGTTCTGCCCGCCGCTGCATGTGGAACCTGTGATCGTCT
CTTTTGATGAAGAGCACAACGCCAGTCGCTCGGAGATTGTGCCGTATCAC
ACTCGTCCTGTGAATGAGGACGACTTGTTGGACCTTGACATAGACATGGA
TGTGGTATCCGACCCATGTCTTTCGGATGGTGTTTCATAA
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Coding sequence (CDS) from alignment at tig00004378_pilon:1349119..1350708+

>Gchil3562.t1 ID=Gchil3562.t1|Name=Gchil3562.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1590bp|location=Sequence derived from alignment at tig00004378_pilon:1349119..1350708+ (Gracilaria chilensis NLEC103_M9 male)
ATGGCCCGTCGCTTCCCGCACAAGGACTTGGCCGCCGTCGATCGCAACGC
CCGCCGCCGTCTCTATGACGCCGTCAAAGTCATGAGCGCTGTCGGCACCA
TTCACAAGTTCGCCAAAAAGCTCAAGTGGCTCGGTGTGCGCCATCTGCAC
GCCGATGTGCCCGATATGAGACGCATGATTCGCACCAAAAAGTCCGCTTT
GCTCTCTAAGCAACGCGCTCTTCAGCACATTGTGCGGTCCATCACCCACT
TTCGACGCCTTTTGGCGCACAGAAGAACCCGCTCTTCGCGCCTGCCCTGT
GCCCAACACTGCTCTCGCTTCTACTTTCCCTTCGTTCTTCTTCGCTGCTC
CACCCCCAACGTATCATCTTCGCCCGATCGCACACGTCTCACCATACACA
TGAACCACCCTTTCTCGCTTTTCTCAGAGACCGATATTGTCTCCATGCTT
CATCCAACTTCTCCTGCTTCCCGTCTCCATTCCCACCCTTGTGCCCGTTC
CGTGCCACTACCTGTCCAAACCCTCTCCTCTCCTTCTTCTCCCACCGCTT
CCAATCCCACATCGCACCCTACGTCCCCCATCCGCCCGCCGCAACAAAAA
ACGCTAATCATGATGCGACTCAAGGACCACGTTGGGCTCAAAACTGAACC
CGTCCCACTCACCCGCGTTCCTCATCCACCCCGTACGTCATCCGCTGTGC
ACGGAGCAGAGCCCGCGTCGCCCACCCAGCCCCACTACGGCGCGcaccac
caacaccgccaccatccacGCCTCATCGAGCAATCTCTGCATGCACTGGA
GCCCATgccaccgccgccgccgccgctgccgccgccgctgcagcACCCAT
GTGTTAAGCTCACGTTGCGCCTCCGCCCCTCAAATATCAAAATCGCCCCA
AAACCACATCGCTGCGCACACATCGCCCATCGCCAACCGTGTAGCCATTG
CGCTTCTCCTCCGCCTCAGCTAGCCTCCATGTCAGAACAACGCGCTTCCT
ATCCGCGCTCAACTGTCGATCGCTCCTCAATATGGGCTGCCCTCGTGGAT
GAGGTGGCTGGAAAACGCTCAAACTCTTCGCCGCACAACAACAACTCCCT
GAATAAACACCCCGTGCAAAAAACAATTGTCAAGAACGATCACGCTCGTC
GACATGGCGCGCACACCGGTTGTCGCACCGTCGTCGAACCGAACATCAGT
GCTAGCGCGATGCAAGTCATGGAGGAGGAGCTCATTTGTTATATCAACGA
TGGGCAAGTTGACGAGCCGCAGCAAGAGACACAGGAGCACGCTGACAAAC
AACCCTCGAAGCAAGAGATTGATCTTCTTTGCTACGAGCAACTCGATTTC
GAATCTCTGGCTGAAGTCGCTGATCAGCAACAGGCTCGTGTCATGGCAAA
CCCCCCACCTCTGTTCTGCCCGCCGCTGCATGTGGAACCTGTGATCGTCT
CTTTTGATGAAGAGCACAACGCCAGTCGCTCGGAGATTGTGCCGTATCAC
ACTCGTCCTGTGAATGAGGACGACTTGTTGGACCTTGACATAGACATGGA
TGTGGTATCCGACCCATGTCTTTCGGATGGTGTTTCATAA
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