Gchil3560.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil3560.t1
Unique NameGchil3560.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length276
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004378_piloncontigtig00004378_pilon:1345423..1346250 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog88036.EFJ32099
PFAMszf-RING_2
Max annot lvl35493|Streptophyta
KEGG koko:K22377
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0044424,GO:0044444,GO:0044464
Evalue8.14e-10
EggNOG OGsCOG5219@1|root,KOG0803@2759|Eukaryota,37RZJ@33090|Viridiplantae,3GFEM@35493|Streptophyta
EC2.3.2.27
DescriptionE3 ubiquitin-protein ligase
COG categoryO
BRITEko00000,ko01000,ko04121
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil3560Gchil3560Gracilaria chilensis NLEC103_M9 malegenetig00004378_pilon 1345423..1346250 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3560.t1.stop1Gchil3560.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004378_pilon 1345423..1345425 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3560.t1.CDS1Gchil3560.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004378_pilon 1345423..1346250 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3560.t1.exon1Gchil3560.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004378_pilon 1345423..1346250 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3560.t1.start1Gchil3560.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004378_pilon 1346248..1346250 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3560.t1Gchil3560.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004378_pilon 1345423..1346250 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil3560.t1 ID=Gchil3560.t1|Name=Gchil3560.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=276bp
MMQPAAQPRGVALGGVSALSGAPLFEPELASYAMQHVHMHMHMMQHQQHQ
QQPQQNGTHSQLVPSAASHSGCHSASDSTPAVPPIQMESAYRIGRYTPAE
RRVRLQRYREKRAQRNYSRRVKYDCRKLIADKRRRVHGRFVKREHELALA
SAQSQRARCRTATAPDEPSHAVREVIELGALTTHPPDIRHLHHVVSVDAV
PFGDHVSHMHAVHHNVPDVHNVHDINHVDHVDHVADVHSALLHSCPSASA
AAPCDASPRDCEAATRTHDVLHHLR*
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spliced messenger RNA

>Gchil3560.t1 ID=Gchil3560.t1|Name=Gchil3560.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=828bp|location=Sequence derived from alignment at tig00004378_pilon:1345423..1346250- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGATGCAGCCGGCGGCGCAGCCTCGCGGCGTGGCGCTGGGTGGCGTGAG
CGCGCTCTCGGGTGCGCCGCTTTTCGAGCCCGAGCTGGCGTCGTACGCCA
TGCAGCACGTGCACATGCACATGCACATGATGCAGCACCAACAGCACCAA
CAACAGCCACAACAAAACGGGACTCACTCGCAGCTGGTGCCATCTGCGGC
GTCACACTCAGGCTGTCACTCGGCGTCGGACAGCACGCCGGCAGTGCCGC
CCATTCAGATGGAATCAGCGTACCGTATCGGGCGCTACACGCCGGCCGAA
CGGCGCGTCCGTCTACAACGCTACCGCGAGAAGAGGGCACAACGCAACTA
CAGTCGACGCGTCAAGTACGATTGTCGTAAACTCATCGCCGACAAGCGCC
GCAGGGTGCACGGTCGCTTCGTGAAGCGCGAGCACGAGCTCGCACTGGCC
AGTGCGCAATCGCAGCGCGCGCGTTGTCGCACCGCCACCGCGCCCGATGA
GCCCTCGCACGCCGTGCGCGAGGTCATTGAGCTGGGCGCGCTCACAACAC
ACCCTCCCGACATACGCCATCTTCACCACGTGGTCTCCGTGGACGCCGTG
CCCTTTGGCGACCACGTGTCACACATGCACGCCGTGCACCACAACGTGCC
AGACGTGCACAATGTGCATGACATAAATCACGTGGACCACGTGGATCACG
TGGCCGACGTGCACTCGGCTCTGCTGCACTCGTGTCCGTCCGCGTCGGCA
GCAGCACCGTGTGATGCGTCGCCGCGCGACTGCGAGGCAGCGACGCGTAC
GCACGACGTGCTGCACCACCTGCGGTAG
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protein sequence of Gchil3560.t1

>Gchil3560.t1 ID=Gchil3560.t1|Name=Gchil3560.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=276bp
MMQPAAQPRGVALGGVSALSGAPLFEPELASYAMQHVHMHMHMMQHQQHQ
QQPQQNGTHSQLVPSAASHSGCHSASDSTPAVPPIQMESAYRIGRYTPAE
RRVRLQRYREKRAQRNYSRRVKYDCRKLIADKRRRVHGRFVKREHELALA
SAQSQRARCRTATAPDEPSHAVREVIELGALTTHPPDIRHLHHVVSVDAV
PFGDHVSHMHAVHHNVPDVHNVHDINHVDHVDHVADVHSALLHSCPSASA
AAPCDASPRDCEAATRTHDVLHHLR*
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mRNA from alignment at tig00004378_pilon:1345423..1346250-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil3560.t1 ID=Gchil3560.t1|Name=Gchil3560.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=828bp|location=Sequence derived from alignment at tig00004378_pilon:1345423..1346250- (Gracilaria chilensis NLEC103_M9 male)
ATGATGCAGCCGGCGGCGCAGCCTCGCGGCGTGGCGCTGGGTGGCGTGAG
CGCGCTCTCGGGTGCGCCGCTTTTCGAGCCCGAGCTGGCGTCGTACGCCA
TGCAGCACGTGCACATGCACATGCACATGATGCAGCACCAACAGCACCAA
CAACAGCCACAACAAAACGGGACTCACTCGCAGCTGGTGCCATCTGCGGC
GTCACACTCAGGCTGTCACTCGGCGTCGGACAGCACGCCGGCAGTGCCGC
CCATTCAGATGGAATCAGCGTACCGTATCGGGCGCTACACGCCGGCCGAA
CGGCGCGTCCGTCTACAACGCTACCGCGAGAAGAGGGCACAACGCAACTA
CAGTCGACGCGTCAAGTACGATTGTCGTAAACTCATCGCCGACAAGCGCC
GCAGGGTGCACGGTCGCTTCGTGAAGCGCGAGCACGAGCTCGCACTGGCC
AGTGCGCAATCGCAGCGCGCGCGTTGTCGCACCGCCACCGCGCCCGATGA
GCCCTCGCACGCCGTGCGCGAGGTCATTGAGCTGGGCGCGCTCACAACAC
ACCCTCCCGACATACGCCATCTTCACCACGTGGTCTCCGTGGACGCCGTG
CCCTTTGGCGACCACGTGTCACACATGCACGCCGTGCACCACAACGTGCC
AGACGTGCACAATGTGCATGACATAAATCACGTGGACCACGTGGATCACG
TGGCCGACGTGCACTCGGCTCTGCTGCACTCGTGTCCGTCCGCGTCGGCA
GCAGCACCGTGTGATGCGTCGCCGCGCGACTGCGAGGCAGCGACGCGTAC
GCACGACGTGCTGCACCACCTGCGGTAG
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Coding sequence (CDS) from alignment at tig00004378_pilon:1345423..1346250-

>Gchil3560.t1 ID=Gchil3560.t1|Name=Gchil3560.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=828bp|location=Sequence derived from alignment at tig00004378_pilon:1345423..1346250- (Gracilaria chilensis NLEC103_M9 male)
ATGATGCAGCCGGCGGCGCAGCCTCGCGGCGTGGCGCTGGGTGGCGTGAG
CGCGCTCTCGGGTGCGCCGCTTTTCGAGCCCGAGCTGGCGTCGTACGCCA
TGCAGCACGTGCACATGCACATGCACATGATGCAGCACCAACAGCACCAA
CAACAGCCACAACAAAACGGGACTCACTCGCAGCTGGTGCCATCTGCGGC
GTCACACTCAGGCTGTCACTCGGCGTCGGACAGCACGCCGGCAGTGCCGC
CCATTCAGATGGAATCAGCGTACCGTATCGGGCGCTACACGCCGGCCGAA
CGGCGCGTCCGTCTACAACGCTACCGCGAGAAGAGGGCACAACGCAACTA
CAGTCGACGCGTCAAGTACGATTGTCGTAAACTCATCGCCGACAAGCGCC
GCAGGGTGCACGGTCGCTTCGTGAAGCGCGAGCACGAGCTCGCACTGGCC
AGTGCGCAATCGCAGCGCGCGCGTTGTCGCACCGCCACCGCGCCCGATGA
GCCCTCGCACGCCGTGCGCGAGGTCATTGAGCTGGGCGCGCTCACAACAC
ACCCTCCCGACATACGCCATCTTCACCACGTGGTCTCCGTGGACGCCGTG
CCCTTTGGCGACCACGTGTCACACATGCACGCCGTGCACCACAACGTGCC
AGACGTGCACAATGTGCATGACATAAATCACGTGGACCACGTGGATCACG
TGGCCGACGTGCACTCGGCTCTGCTGCACTCGTGTCCGTCCGCGTCGGCA
GCAGCACCGTGTGATGCGTCGCCGCGCGACTGCGAGGCAGCGACGCGTAC
GCACGACGTGCTGCACCACCTGCGGTAG
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