Gchil3552.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gchil3552.t1
Unique Name	Gchil3552.t1
Type	mRNA
Organism	Gracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length	366

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00004378_pilon	contig	tig00004378_pilon:1315837..1316934 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria chilensis NLEC103_M9 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	130081.XP_005705639.1
PFAMs	DUF3395,DnaJ
Max annot lvl	2759\|Eukaryota
KEGG ko	ko:K02288,ko:K06063,ko:K09531
KEGG Pathway	ko00196,ko01100,ko03040,ko04330,ko05169,ko05203,map00196,map01100,map03040,map04330,map05169,map05203
KEGG Module	M00355
Evalue	4.22e-10
EggNOG OGs	COG0484@1\|root,KOG0718@2759\|Eukaryota
EC	4.4.1.32
Description	response to very low light intensity stimulus
COG category	O
BRITE	ko00000,ko00001,ko00002,ko00194,ko01000,ko03041,ko03110

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gchil3552	Gchil3552	Gracilaria chilensis NLEC103_M9 male	gene	tig00004378_pilon 1315837..1316934 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil3552.t1.start1	Gchil3552.t1.start1	Gracilaria chilensis NLEC103_M9 male	start_codon	tig00004378_pilon 1315837..1315839 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil3552.t1.CDS1	Gchil3552.t1.CDS1	Gracilaria chilensis NLEC103_M9 male	CDS	tig00004378_pilon 1315837..1316934 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil3552.t1.exon1	Gchil3552.t1.exon1	Gracilaria chilensis NLEC103_M9 male	exon	tig00004378_pilon 1315837..1316934 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil3552.t1.stop1	Gchil3552.t1.stop1	Gracilaria chilensis NLEC103_M9 male	stop_codon	tig00004378_pilon 1316932..1316934 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil3552.t1	Gchil3552.t1	Gracilaria chilensis NLEC103_M9 male	polypeptide	tig00004378_pilon 1315837..1316934 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00004378_pilon:1315837..1316934+
coding sequence from alignment at tig00004378_pilon:1315837..1316934+

mRNA sequence

>Gchil3552.t1 ID=Gchil3552.t1|Name=Gchil3552.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=366bp
MSLSETWRLEEETQKVSLPPSAAVVSPGASLPAAAACEMLLPDEDADEVA
VEPPPPPPSPPQPDSALVLKLGTLVVIGAMAANVVAFRYSRWAVGKDLHR
AWERHQRQRPNPSQPQNPFMRRMRHAPFSTPERNQQQQAYTARAAAAAAA
AAHAAAQRQRAERAERAARDRAQREDVRAGYAQWEARFGRGERVHMHFDA
KLVDDMLHQLRQASSRMSFGVGSGPFSMDNRLMEQLLKAARQAQQAQQAQ
QAQQAQQAQQRQRAGDRSEQDFDAFRFWEAMNGAQWRHFARDGHNSGGVH
RRVGMARHYQALGLQQGASEQDVKTAYRQEVMKWHPDRYRGNDKAHAASR
FRQVTDAYTALTKKE*

spliced messenger RNA

>Gchil3552.t1 ID=Gchil3552.t1|Name=Gchil3552.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1098bp|location=Sequence derived from alignment at tig00004378_pilon:1315837..1316934+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCTCTCTCAGAGACATGGCGCCTGGAGGAAGAAACACAAAAAGTCTC
TCTGCCTCCTTCCGCAGCCGTCGTGTCGCCCGGTGCGTCTCTACccgccg
ccgccgcgtgcgaaatgctgctgcccgacgaagacgccgacgaagtcgcc
gtcgagccgccgccgccgccgccgtccccgccgcagccCGACTCGGCGCT
CGTGCTCAAGCTCGGCACGCTGGTCGTCATCGGCGCCATGGCCGCCAACG
TCGTCGCCTTCCGCTACAGCCGCTGGGCTGTCGGAAAGGACCTGCACCGC
GCCTGGGAGCGTCACCAGCGCCAACGCCCAAACCCGTCCCAACCGCAAAA
CCCCTTTATGCGCCGCATGCGCCACGCCCCCTTCTCCACCCCCGAGCGCA
ACCAACAACAGCAAGCCTACACTGcgcgcgccgccgccgccgccgccgcc
gctgcccacgccgctgcGCAGCGACAGCGCGCAGAGCGCGCAGAGCGTGC
CGCCCGCGATCGCGCGCAGCGCGAAGACGTGCGCGCTGGCTACGCGCAAT
GGGAAGCCCGTTTTGGTCGGGGCGAACGCGTGCACATGCACTTTGATGCA
AAGCTCGTTGACGACATGTTACATCAGTTGCGTCAAGCCTCCAGTCGCAT
GAGCTTTGGCGTCGGAAGCGGTCCCTTTTCCATGGACAACCGCCTCATGG
AGCAGTTGTTAAAGGCGGCCCGACAAgcacaacaagcacaacaggcacaa
caggcacaacaggcacaacaggcGCAGCAACGACAGCGCGCTGGCGACCG
CTCCGAGCAAGACTTTGATGCCTTTCGCTTCTGGGAGGCGATGAATGGCG
CGCAGTGGCGCCACTTTGCCAGAGACGGCCACAACAGTGGCGGCGTGCAT
CGCCGCGTGGGAATGGCACGCCACTACCAGGCGCTGGGTCTGCAGCAAGG
AGCTTCAGAACAAGACGTGAAAACCGCGTACCGACAAGAGGTCATGAAAT
GGCATCCCGATCGATACCGCGGCAATGACAAGGCACATGCCGCAAGTCGA
TTCCGTCAAGTCACCGACGCGTACACAGCGTTGACCAAAAAAGAATAA

protein sequence of Gchil3552.t1

>Gchil3552.t1 ID=Gchil3552.t1|Name=Gchil3552.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=366bp
MSLSETWRLEEETQKVSLPPSAAVVSPGASLPAAAACEMLLPDEDADEVA
VEPPPPPPSPPQPDSALVLKLGTLVVIGAMAANVVAFRYSRWAVGKDLHR
AWERHQRQRPNPSQPQNPFMRRMRHAPFSTPERNQQQQAYTARAAAAAAA
AAHAAAQRQRAERAERAARDRAQREDVRAGYAQWEARFGRGERVHMHFDA
KLVDDMLHQLRQASSRMSFGVGSGPFSMDNRLMEQLLKAARQAQQAQQAQ
QAQQAQQAQQRQRAGDRSEQDFDAFRFWEAMNGAQWRHFARDGHNSGGVH
RRVGMARHYQALGLQQGASEQDVKTAYRQEVMKWHPDRYRGNDKAHAASR
FRQVTDAYTALTKKE*

mRNA from alignment at tig00004378_pilon:1315837..1316934+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gchil3552.t1 ID=Gchil3552.t1|Name=Gchil3552.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1098bp|location=Sequence derived from alignment at tig00004378_pilon:1315837..1316934+ (Gracilaria chilensis NLEC103_M9 male)
ATGTCTCTCTCAGAGACATGGCGCCTGGAGGAAGAAACACAAAAAGTCTC
TCTGCCTCCTTCCGCAGCCGTCGTGTCGCCCGGTGCGTCTCTACccgccg
ccgccgcgtgcgaaatgctgctgcccgacgaagacgccgacgaagtcgcc
gtcgagccgccgccgccgccgccgtccccgccgcagccCGACTCGGCGCT
CGTGCTCAAGCTCGGCACGCTGGTCGTCATCGGCGCCATGGCCGCCAACG
TCGTCGCCTTCCGCTACAGCCGCTGGGCTGTCGGAAAGGACCTGCACCGC
GCCTGGGAGCGTCACCAGCGCCAACGCCCAAACCCGTCCCAACCGCAAAA
CCCCTTTATGCGCCGCATGCGCCACGCCCCCTTCTCCACCCCCGAGCGCA
ACCAACAACAGCAAGCCTACACTGcgcgcgccgccgccgccgccgccgcc
gctgcccacgccgctgcGCAGCGACAGCGCGCAGAGCGCGCAGAGCGTGC
CGCCCGCGATCGCGCGCAGCGCGAAGACGTGCGCGCTGGCTACGCGCAAT
GGGAAGCCCGTTTTGGTCGGGGCGAACGCGTGCACATGCACTTTGATGCA
AAGCTCGTTGACGACATGTTACATCAGTTGCGTCAAGCCTCCAGTCGCAT
GAGCTTTGGCGTCGGAAGCGGTCCCTTTTCCATGGACAACCGCCTCATGG
AGCAGTTGTTAAAGGCGGCCCGACAAgcacaacaagcacaacaggcacaa
caggcacaacaggcacaacaggcGCAGCAACGACAGCGCGCTGGCGACCG
CTCCGAGCAAGACTTTGATGCCTTTCGCTTCTGGGAGGCGATGAATGGCG
CGCAGTGGCGCCACTTTGCCAGAGACGGCCACAACAGTGGCGGCGTGCAT
CGCCGCGTGGGAATGGCACGCCACTACCAGGCGCTGGGTCTGCAGCAAGG
AGCTTCAGAACAAGACGTGAAAACCGCGTACCGACAAGAGGTCATGAAAT
GGCATCCCGATCGATACCGCGGCAATGACAAGGCACATGCCGCAAGTCGA
TTCCGTCAAGTCACCGACGCGTACACAGCGTTGACCAAAAAAGAATAA

Coding sequence (CDS) from alignment at tig00004378_pilon:1315837..1316934+

>Gchil3552.t1 ID=Gchil3552.t1|Name=Gchil3552.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1098bp|location=Sequence derived from alignment at tig00004378_pilon:1315837..1316934+ (Gracilaria chilensis NLEC103_M9 male)
ATGTCTCTCTCAGAGACATGGCGCCTGGAGGAAGAAACACAAAAAGTCTC
TCTGCCTCCTTCCGCAGCCGTCGTGTCGCCCGGTGCGTCTCTACccgccg
ccgccgcgtgcgaaatgctgctgcccgacgaagacgccgacgaagtcgcc
gtcgagccgccgccgccgccgccgtccccgccgcagccCGACTCGGCGCT
CGTGCTCAAGCTCGGCACGCTGGTCGTCATCGGCGCCATGGCCGCCAACG
TCGTCGCCTTCCGCTACAGCCGCTGGGCTGTCGGAAAGGACCTGCACCGC
GCCTGGGAGCGTCACCAGCGCCAACGCCCAAACCCGTCCCAACCGCAAAA
CCCCTTTATGCGCCGCATGCGCCACGCCCCCTTCTCCACCCCCGAGCGCA
ACCAACAACAGCAAGCCTACACTGcgcgcgccgccgccgccgccgccgcc
gctgcccacgccgctgcGCAGCGACAGCGCGCAGAGCGCGCAGAGCGTGC
CGCCCGCGATCGCGCGCAGCGCGAAGACGTGCGCGCTGGCTACGCGCAAT
GGGAAGCCCGTTTTGGTCGGGGCGAACGCGTGCACATGCACTTTGATGCA
AAGCTCGTTGACGACATGTTACATCAGTTGCGTCAAGCCTCCAGTCGCAT
GAGCTTTGGCGTCGGAAGCGGTCCCTTTTCCATGGACAACCGCCTCATGG
AGCAGTTGTTAAAGGCGGCCCGACAAgcacaacaagcacaacaggcacaa
caggcacaacaggcacaacaggcGCAGCAACGACAGCGCGCTGGCGACCG
CTCCGAGCAAGACTTTGATGCCTTTCGCTTCTGGGAGGCGATGAATGGCG
CGCAGTGGCGCCACTTTGCCAGAGACGGCCACAACAGTGGCGGCGTGCAT
CGCCGCGTGGGAATGGCACGCCACTACCAGGCGCTGGGTCTGCAGCAAGG
AGCTTCAGAACAAGACGTGAAAACCGCGTACCGACAAGAGGTCATGAAAT
GGCATCCCGATCGATACCGCGGCAATGACAAGGCACATGCCGCAAGTCGA
TTCCGTCAAGTCACCGACGCGTACACAGCGTTGACCAAAAAAGAATAA