Gchil3549.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil3549.t1
Unique NameGchil3549.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length142
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004378_piloncontigtig00004378_pilon:1282648..1283073 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil3549Gchil3549Gracilaria chilensis NLEC103_M9 malegenetig00004378_pilon 1282648..1283073 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3549.t1.stop1Gchil3549.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004378_pilon 1282648..1282650 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3549.t1.CDS1Gchil3549.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004378_pilon 1282648..1283073 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3549.t1.exon1Gchil3549.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004378_pilon 1282648..1283073 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3549.t1.start1Gchil3549.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004378_pilon 1283071..1283073 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3549.t1Gchil3549.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004378_pilon 1282648..1283073 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil3549.t1 ID=Gchil3549.t1|Name=Gchil3549.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=142bp
MEKGSAAASVSVTVSIIDGMSCCAEELKKALCPLQSDSTFAGLKTAVKGF
RLHLKDITDRLRVFVAEIPNKKDEEQVGPIAAITSSSKSRASLNLDDAAS
VLRSLSISTKASSSALTKTDLDSILIQNIQKALFRVTIKDL*
back to top

spliced messenger RNA

>Gchil3549.t1 ID=Gchil3549.t1|Name=Gchil3549.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=426bp|location=Sequence derived from alignment at tig00004378_pilon:1282648..1283073- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGAAAAAGGTTCTGCCGCAGCCTCTGTTTCTGTCACGGTTTCGATCAT
TGATGGAATGAGTTGCTGTGCCGAGGAATTAAAGAAGGCCCTTTGCCCTC
TGCAATCAGACTCGACTTTTGCCGGGCTGAAAACAGCCGTCAAAGGATTT
CGACTCCATTTAAAGGACATTACCGACAGGCTCCGTGTCTTTGTTGCTGA
AATACCTAACAAGAAAGATGAGGAACAGGTTGGTCCCATTGCGGCTATAA
CGAGCTCTTCCAAGTCGCGCGCTTCTCTGAACCTGGACGACGCTGCATCG
GTCCTTCGTTCTCTTTCCATTTCAACGAAAGCTTCTTCTTCCGCCCTCAC
CAAAACGGACCTTGATTCAATCCTTATTCAAAATATCCAAAAGGCGCTCT
TTCGAGTTACCATCAAGGATCTATAA
back to top

protein sequence of Gchil3549.t1

>Gchil3549.t1 ID=Gchil3549.t1|Name=Gchil3549.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=142bp
MEKGSAAASVSVTVSIIDGMSCCAEELKKALCPLQSDSTFAGLKTAVKGF
RLHLKDITDRLRVFVAEIPNKKDEEQVGPIAAITSSSKSRASLNLDDAAS
VLRSLSISTKASSSALTKTDLDSILIQNIQKALFRVTIKDL*
back to top

mRNA from alignment at tig00004378_pilon:1282648..1283073-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil3549.t1 ID=Gchil3549.t1|Name=Gchil3549.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=426bp|location=Sequence derived from alignment at tig00004378_pilon:1282648..1283073- (Gracilaria chilensis NLEC103_M9 male)
ATGGAAAAAGGTTCTGCCGCAGCCTCTGTTTCTGTCACGGTTTCGATCAT
TGATGGAATGAGTTGCTGTGCCGAGGAATTAAAGAAGGCCCTTTGCCCTC
TGCAATCAGACTCGACTTTTGCCGGGCTGAAAACAGCCGTCAAAGGATTT
CGACTCCATTTAAAGGACATTACCGACAGGCTCCGTGTCTTTGTTGCTGA
AATACCTAACAAGAAAGATGAGGAACAGGTTGGTCCCATTGCGGCTATAA
CGAGCTCTTCCAAGTCGCGCGCTTCTCTGAACCTGGACGACGCTGCATCG
GTCCTTCGTTCTCTTTCCATTTCAACGAAAGCTTCTTCTTCCGCCCTCAC
CAAAACGGACCTTGATTCAATCCTTATTCAAAATATCCAAAAGGCGCTCT
TTCGAGTTACCATCAAGGATCTATAA
back to top

Coding sequence (CDS) from alignment at tig00004378_pilon:1282648..1283073-

>Gchil3549.t1 ID=Gchil3549.t1|Name=Gchil3549.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=426bp|location=Sequence derived from alignment at tig00004378_pilon:1282648..1283073- (Gracilaria chilensis NLEC103_M9 male)
ATGGAAAAAGGTTCTGCCGCAGCCTCTGTTTCTGTCACGGTTTCGATCAT
TGATGGAATGAGTTGCTGTGCCGAGGAATTAAAGAAGGCCCTTTGCCCTC
TGCAATCAGACTCGACTTTTGCCGGGCTGAAAACAGCCGTCAAAGGATTT
CGACTCCATTTAAAGGACATTACCGACAGGCTCCGTGTCTTTGTTGCTGA
AATACCTAACAAGAAAGATGAGGAACAGGTTGGTCCCATTGCGGCTATAA
CGAGCTCTTCCAAGTCGCGCGCTTCTCTGAACCTGGACGACGCTGCATCG
GTCCTTCGTTCTCTTTCCATTTCAACGAAAGCTTCTTCTTCCGCCCTCAC
CAAAACGGACCTTGATTCAATCCTTATTCAAAATATCCAAAAGGCGCTCT
TTCGAGTTACCATCAAGGATCTATAA
back to top