Gchil3548.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil3548.t1
Unique NameGchil3548.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length398
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004378_piloncontigtig00004378_pilon:1169624..1170817 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil3548Gchil3548Gracilaria chilensis NLEC103_M9 malegenetig00004378_pilon 1169624..1170817 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3548.t1.start1Gchil3548.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004378_pilon 1169624..1169626 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3548.t1.CDS1Gchil3548.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004378_pilon 1169624..1170817 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3548.t1.exon1Gchil3548.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004378_pilon 1169624..1170817 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3548.t1.stop1Gchil3548.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004378_pilon 1170815..1170817 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3548.t1Gchil3548.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004378_pilon 1169624..1170817 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil3548.t1 ID=Gchil3548.t1|Name=Gchil3548.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=398bp
MRLMTAPPRQRSPVRVPSRAPSLMAVPPSSSSPSPPPPPPQRHFYRATTA
SARAAQHAAVAADTAAAAAAAAAAAAAADASAADAHAHRAPPKKRVRLVL
ERRLIRGSAVFRTPTERDLERFLREERARQLHTCVAAAIDVPPAAHRRAS
HSLDLAQLAALDEPVAVAIFVRRLRARRALLDPRSPSPSSFPSPSPSAPS
PSAPPRAHSAHHPAALSAHASGLPPSPSPQPQPQPAARARSELLFARPRV
TPQSSSWSPSPLSPLSPLPPLSPSPLSPSPLRRRRRSASSSTTSSATTAT
AAPLRILTAIEPVDPAGVLADAELCRRSSCHGAAATHDAAARIDLALFRP
RRRNTAADHPDSRFRHKLHRLRSFRTRPHSWSSIVRRLSNQRHVNPP*
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spliced messenger RNA

>Gchil3548.t1 ID=Gchil3548.t1|Name=Gchil3548.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1194bp|location=Sequence derived from alignment at tig00004378_pilon:1169624..1170817+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAGATTGATGACGGCCCCCCCGCGCCAACGCTCGCCGGTTCGCGTCCC
GTCGCGTGCGCCGTCGCTCATGGCCGTGCCGccgtcgtcgtcgtcgccgt
cgccgccgccgccgccgccgcagcgccacttctaccgcgccaccaccgcg
tcggcgcgcgccgcgcagcacgccgccgtcgccgccgacaccgccgccgc
cgctgccgccgctgccgccgccgctgccgccgccgacgcctccgctgccg
acgctcacGCGCACCGCGCCCCGCCCAAGAAGCGCGTGCGACTCGTGTTG
GAACGACGTCTCATCCGCGGCAGCGCCGTGTTCCGCACGCCCACCGAGCG
CGACCTCGAGCGCTTTCTGCGCGAGGAGCGTGCCCGTCAATTACACACCT
GCGTCGCCGCCGCCATCGACGTGCCGCCGGCTGCTCACCGTCGCGCCTCG
CACTCGCTCGATCTCGCCCAGCTGGCCGCTCTCGACGAGCCTGTCGCCGT
TGCCATATTTGTGCGTCGCCTACGCGCCCGTCGCGCCCTTCTTGatcccc
gttccccatccccatcctcatttccctccccgtcgccctcTGCCCCGTCG
CCCTCTGCCCCGCCGCGCGCCCACAGCGCTCACCACCCTGCTGCGCTTTC
CGCGCATGCGTCCGGCCTGccgccatcgccatcgccgcagccgcagccgc
agcctgccgcgcgcgcgcgttccgagctactttttgcgcgcccacgcgtc
acgcctcaatcatcgtcgtggtcgccgtcgccgctttcaccgctgtcgcc
gttgccgccgctgtcgccgtcgccgctgtcgccgtcgcctctgcgtcgcc
gccgtcgctCAGCGTCGTCGTCGACCACGTCGTCGGCCACCACTGCCACT
GCTGCGCCGTTGCGCATTCTCACCGCCATCGAACCCGTCGATCCGGCCGG
CGTTCTCGCCGACGCTGAGCTTTGTCGCCGCTCTAGCTGTCATGGCGCCG
CCGCAACTCATGATGCTGCCGCCCGCATTGATCTCGCCTTGTTTCGCCCC
CGCCGTCGCAACACCGCTGCCGATCACCCCGACAGTCGCTTTCGTCACAA
GCTCCATCGACTGCGCTCCTTTCGCACCCGCCCGCATTCGTGGTCTTCGA
TTGTGCGTCGTCTCTCCAACCAGCGCCACGTCAACCCTCCCTAG
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protein sequence of Gchil3548.t1

>Gchil3548.t1 ID=Gchil3548.t1|Name=Gchil3548.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=398bp
MRLMTAPPRQRSPVRVPSRAPSLMAVPPSSSSPSPPPPPPQRHFYRATTA
SARAAQHAAVAADTAAAAAAAAAAAAAADASAADAHAHRAPPKKRVRLVL
ERRLIRGSAVFRTPTERDLERFLREERARQLHTCVAAAIDVPPAAHRRAS
HSLDLAQLAALDEPVAVAIFVRRLRARRALLDPRSPSPSSFPSPSPSAPS
PSAPPRAHSAHHPAALSAHASGLPPSPSPQPQPQPAARARSELLFARPRV
TPQSSSWSPSPLSPLSPLPPLSPSPLSPSPLRRRRRSASSSTTSSATTAT
AAPLRILTAIEPVDPAGVLADAELCRRSSCHGAAATHDAAARIDLALFRP
RRRNTAADHPDSRFRHKLHRLRSFRTRPHSWSSIVRRLSNQRHVNPP*
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mRNA from alignment at tig00004378_pilon:1169624..1170817+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil3548.t1 ID=Gchil3548.t1|Name=Gchil3548.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1194bp|location=Sequence derived from alignment at tig00004378_pilon:1169624..1170817+ (Gracilaria chilensis NLEC103_M9 male)
ATGAGATTGATGACGGCCCCCCCGCGCCAACGCTCGCCGGTTCGCGTCCC
GTCGCGTGCGCCGTCGCTCATGGCCGTGCCGccgtcgtcgtcgtcgccgt
cgccgccgccgccgccgccgcagcgccacttctaccgcgccaccaccgcg
tcggcgcgcgccgcgcagcacgccgccgtcgccgccgacaccgccgccgc
cgctgccgccgctgccgccgccgctgccgccgccgacgcctccgctgccg
acgctcacGCGCACCGCGCCCCGCCCAAGAAGCGCGTGCGACTCGTGTTG
GAACGACGTCTCATCCGCGGCAGCGCCGTGTTCCGCACGCCCACCGAGCG
CGACCTCGAGCGCTTTCTGCGCGAGGAGCGTGCCCGTCAATTACACACCT
GCGTCGCCGCCGCCATCGACGTGCCGCCGGCTGCTCACCGTCGCGCCTCG
CACTCGCTCGATCTCGCCCAGCTGGCCGCTCTCGACGAGCCTGTCGCCGT
TGCCATATTTGTGCGTCGCCTACGCGCCCGTCGCGCCCTTCTTGatcccc
gttccccatccccatcctcatttccctccccgtcgccctcTGCCCCGTCG
CCCTCTGCCCCGCCGCGCGCCCACAGCGCTCACCACCCTGCTGCGCTTTC
CGCGCATGCGTCCGGCCTGccgccatcgccatcgccgcagccgcagccgc
agcctgccgcgcgcgcgcgttccgagctactttttgcgcgcccacgcgtc
acgcctcaatcatcgtcgtggtcgccgtcgccgctttcaccgctgtcgcc
gttgccgccgctgtcgccgtcgccgctgtcgccgtcgcctctgcgtcgcc
gccgtcgctCAGCGTCGTCGTCGACCACGTCGTCGGCCACCACTGCCACT
GCTGCGCCGTTGCGCATTCTCACCGCCATCGAACCCGTCGATCCGGCCGG
CGTTCTCGCCGACGCTGAGCTTTGTCGCCGCTCTAGCTGTCATGGCGCCG
CCGCAACTCATGATGCTGCCGCCCGCATTGATCTCGCCTTGTTTCGCCCC
CGCCGTCGCAACACCGCTGCCGATCACCCCGACAGTCGCTTTCGTCACAA
GCTCCATCGACTGCGCTCCTTTCGCACCCGCCCGCATTCGTGGTCTTCGA
TTGTGCGTCGTCTCTCCAACCAGCGCCACGTCAACCCTCCCTAG
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Coding sequence (CDS) from alignment at tig00004378_pilon:1169624..1170817+

>Gchil3548.t1 ID=Gchil3548.t1|Name=Gchil3548.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1194bp|location=Sequence derived from alignment at tig00004378_pilon:1169624..1170817+ (Gracilaria chilensis NLEC103_M9 male)
ATGAGATTGATGACGGCCCCCCCGCGCCAACGCTCGCCGGTTCGCGTCCC
GTCGCGTGCGCCGTCGCTCATGGCCGTGCCGccgtcgtcgtcgtcgccgt
cgccgccgccgccgccgccgcagcgccacttctaccgcgccaccaccgcg
tcggcgcgcgccgcgcagcacgccgccgtcgccgccgacaccgccgccgc
cgctgccgccgctgccgccgccgctgccgccgccgacgcctccgctgccg
acgctcacGCGCACCGCGCCCCGCCCAAGAAGCGCGTGCGACTCGTGTTG
GAACGACGTCTCATCCGCGGCAGCGCCGTGTTCCGCACGCCCACCGAGCG
CGACCTCGAGCGCTTTCTGCGCGAGGAGCGTGCCCGTCAATTACACACCT
GCGTCGCCGCCGCCATCGACGTGCCGCCGGCTGCTCACCGTCGCGCCTCG
CACTCGCTCGATCTCGCCCAGCTGGCCGCTCTCGACGAGCCTGTCGCCGT
TGCCATATTTGTGCGTCGCCTACGCGCCCGTCGCGCCCTTCTTGatcccc
gttccccatccccatcctcatttccctccccgtcgccctcTGCCCCGTCG
CCCTCTGCCCCGCCGCGCGCCCACAGCGCTCACCACCCTGCTGCGCTTTC
CGCGCATGCGTCCGGCCTGccgccatcgccatcgccgcagccgcagccgc
agcctgccgcgcgcgcgcgttccgagctactttttgcgcgcccacgcgtc
acgcctcaatcatcgtcgtggtcgccgtcgccgctttcaccgctgtcgcc
gttgccgccgctgtcgccgtcgccgctgtcgccgtcgcctctgcgtcgcc
gccgtcgctCAGCGTCGTCGTCGACCACGTCGTCGGCCACCACTGCCACT
GCTGCGCCGTTGCGCATTCTCACCGCCATCGAACCCGTCGATCCGGCCGG
CGTTCTCGCCGACGCTGAGCTTTGTCGCCGCTCTAGCTGTCATGGCGCCG
CCGCAACTCATGATGCTGCCGCCCGCATTGATCTCGCCTTGTTTCGCCCC
CGCCGTCGCAACACCGCTGCCGATCACCCCGACAGTCGCTTTCGTCACAA
GCTCCATCGACTGCGCTCCTTTCGCACCCGCCCGCATTCGTGGTCTTCGA
TTGTGCGTCGTCTCTCCAACCAGCGCCACGTCAACCCTCCCTAG
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