Gchil3547.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil3547.t1
Unique NameGchil3547.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length106
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004378_piloncontigtig00004378_pilon:1168803..1169245 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog221103.XP_007844417.1
Preferred nameRPL44
PFAMsRibosomal_L44
Max annot lvl4751|Fungi
KEGG koko:K02929
KEGG Pathwayko03010,map03010
KEGG ModuleM00177,M00179
GOsGO:0002181,GO:0003674,GO:0003735,GO:0005198,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0006412,GO:0006518,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015934,GO:0019538,GO:0022625,GO:0022626,GO:0032991,GO:0034641,GO:0034645,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0071704,GO:1901564,GO:1901566,GO:1901576,GO:1990904
Evalue1.92e-53
EggNOG OGsCOG1631@1|root,KOG3464@2759|Eukaryota,3A3DQ@33154|Opisthokonta,3P3Z6@4751|Fungi,3V18B@5204|Basidiomycota,229JY@155619|Agaricomycetes,3W77C@5338|Agaricales
DescriptionBelongs to the eukaryotic ribosomal protein eL42 family
COG categoryJ
BRITEbr01610,ko00000,ko00001,ko00002,ko03011
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil3547Gchil3547Gracilaria chilensis NLEC103_M9 malegenetig00004378_pilon 1168803..1169245 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3547.t1Gchil3547.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004378_pilon 1168803..1169245 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3547.t1.stop1Gchil3547.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004378_pilon 1168803..1168805 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3547.t1.CDS1Gchil3547.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004378_pilon 1168803..1169117 -
Gchil3547.t1.CDS2Gchil3547.t1.CDS2Gracilaria chilensis NLEC103_M9 maleCDStig00004378_pilon 1169243..1169245 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3547.t1.exon1Gchil3547.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004378_pilon 1168803..1169117 -
Gchil3547.t1.exon2Gchil3547.t1.exon2Gracilaria chilensis NLEC103_M9 maleexontig00004378_pilon 1169243..1169245 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3547.t1.intron1Gchil3547.t1.intron1Gracilaria chilensis NLEC103_M9 maleintrontig00004378_pilon 1169118..1169242 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3547.t1.start1Gchil3547.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004378_pilon 1169243..1169245 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil3547.t1 ID=Gchil3547.t1|Name=Gchil3547.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=106bp
MVVVPKSRKTLCIGASCKKHTLHKVTQYKKGKDSLYAQGKRRYDRKQAGF
GGQTKPVFHKKAKTTKKIVLRLECTQCGFKQQRVIKRCKHFELGDQKKTK
GVATY*
back to top

spliced messenger RNA

>Gchil3547.t1 ID=Gchil3547.t1|Name=Gchil3547.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=318bp|location=Sequence derived from alignment at tig00004378_pilon:1168803..1169245- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGTGGTCGTCCCCAAGTCGCGCAAGACGCTGTGCATCGGCGCGTCCTG
CAAGAAGCACACGCTGCACAAGGTGACGCAATACAAGAAAGGAAAAGACT
CGCTCTACGCGCAGGGAAAGCGTCGCTACGACCGCAAGCAGGCCGGATTT
GGCGGACAGACCAAGCCCGTGTTCCACAAGAAGGCCAAGACCACCAAGAA
GATCGTGCTGCGCCTCGAGTGCACGCAGTGCGGCTTCAAGCAACAGCGCG
TCATCAAGCGCTGCAAGCACTTTGAGTTGGGCGATCAGAAGAAGACCAAG
GGCGTAGCCACCTACTAA
back to top

protein sequence of Gchil3547.t1

>Gchil3547.t1 ID=Gchil3547.t1|Name=Gchil3547.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=106bp
MVVVPKSRKTLCIGASCKKHTLHKVTQYKKGKDSLYAQGKRRYDRKQAGF
GGQTKPVFHKKAKTTKKIVLRLECTQCGFKQQRVIKRCKHFELGDQKKTK
GVATY*
back to top

mRNA from alignment at tig00004378_pilon:1168803..1169245-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil3547.t1 ID=Gchil3547.t1|Name=Gchil3547.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=443bp|location=Sequence derived from alignment at tig00004378_pilon:1168803..1169245- (Gracilaria chilensis NLEC103_M9 male)
ATGGTACGCCACGCTCTCGTCCCCGTTCCCGTCCCCGTCCCCGTCCCCGT
CCCCATCCACGCTCGCGCCGCCACGCGCGCTAACCGCTCCCGTGTCCGTG
TGTTGCACATTAAACGCGCGCTTCGCAGGTGGTCGTCCCCAAGTCGCGCA
AGACGCTGTGCATCGGCGCGTCCTGCAAGAAGCACACGCTGCACAAGGTG
ACGCAATACAAGAAAGGAAAAGACTCGCTCTACGCGCAGGGAAAGCGTCG
CTACGACCGCAAGCAGGCCGGATTTGGCGGACAGACCAAGCCCGTGTTCC
ACAAGAAGGCCAAGACCACCAAGAAGATCGTGCTGCGCCTCGAGTGCACG
CAGTGCGGCTTCAAGCAACAGCGCGTCATCAAGCGCTGCAAGCACTTTGA
GTTGGGCGATCAGAAGAAGACCAAGGGCGTAGCCACCTACTAA
back to top

Coding sequence (CDS) from alignment at tig00004378_pilon:1168803..1169245-

>Gchil3547.t1 ID=Gchil3547.t1|Name=Gchil3547.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=318bp|location=Sequence derived from alignment at tig00004378_pilon:1168803..1169245- (Gracilaria chilensis NLEC103_M9 male)
ATGGTGGTCGTCCCCAAGTCGCGCAAGACGCTGTGCATCGGCGCGTCCTG
CAAGAAGCACACGCTGCACAAGGTGACGCAATACAAGAAAGGAAAAGACT
CGCTCTACGCGCAGGGAAAGCGTCGCTACGACCGCAAGCAGGCCGGATTT
GGCGGACAGACCAAGCCCGTGTTCCACAAGAAGGCCAAGACCACCAAGAA
GATCGTGCTGCGCCTCGAGTGCACGCAGTGCGGCTTCAAGCAACAGCGCG
TCATCAAGCGCTGCAAGCACTTTGAGTTGGGCGATCAGAAGAAGACCAAG
GGCGTAGCCACCTACTAA
back to top