Gchil3546.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil3546.t1
Unique NameGchil3546.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length513
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004378_piloncontigtig00004378_pilon:1167075..1168712 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog4577.GRMZM2G008273_P01
PFAMsPCI
Max annot lvl35493|Streptophyta
KEGG koko:K12177
GOsGO:0000338,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005829,GO:0006464,GO:0006508,GO:0006511,GO:0006807,GO:0007346,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009987,GO:0010389,GO:0010564,GO:0010971,GO:0019538,GO:0019941,GO:0030163,GO:0036211,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0043632,GO:0044237,GO:0044238,GO:0044248,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044424,GO:0044444,GO:0044464,GO:0045787,GO:0045931,GO:0048518,GO:0048522,GO:0050789,GO:0050794,GO:0051603,GO:0051726,GO:0065007,GO:0070646,GO:0070647,GO:0071704,GO:0090068,GO:1901564,GO:1901565,GO:1901575,GO:1901987,GO:1901989,GO:1901990,GO:1901992,GO:1902749,GO:1902751
Evalue1.48e-22
EggNOG OGsKOG2582@1|root,KOG2582@2759|Eukaryota,37SVY@33090|Viridiplantae,3G9TU@35493|Streptophyta,3KXH0@4447|Liliopsida,3I7SH@38820|Poales
Descriptionmotif in proteasome subunits, Int-6, Nip-1 and TRIP-15
COG categoryOT
BRITEko00000,ko04121
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil3546Gchil3546Gracilaria chilensis NLEC103_M9 malegenetig00004378_pilon 1167075..1168712 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3546.t1Gchil3546.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004378_pilon 1167075..1168712 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3546.t1.start1Gchil3546.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004378_pilon 1167075..1167077 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3546.t1.CDS1Gchil3546.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004378_pilon 1167075..1168349 +
Gchil3546.t1.CDS2Gchil3546.t1.CDS2Gracilaria chilensis NLEC103_M9 maleCDStig00004378_pilon 1168449..1168712 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3546.t1.exon1Gchil3546.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004378_pilon 1167075..1168349 +
Gchil3546.t1.exon2Gchil3546.t1.exon2Gracilaria chilensis NLEC103_M9 maleexontig00004378_pilon 1168449..1168712 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3546.t1.intron1Gchil3546.t1.intron1Gracilaria chilensis NLEC103_M9 maleintrontig00004378_pilon 1168350..1168448 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3546.t1.stop1Gchil3546.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004378_pilon 1168710..1168712 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil3546.t1 ID=Gchil3546.t1|Name=Gchil3546.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=513bp
MEAAMHAALLAPARRAAPNDSHPQRISSLPDAVAALKAHALPSSPSPSPH
AADQDADAQDADAQDAAAARLTHVRASHELLARTADAVDAADAASLHAAR
AQLHPRRHTLAYVATLHASLARLRADSPNVDALLAELRALVANAPRGAAL
HAAPRWVGACRHAARVVLQARHAARALALVRTLRAAADHLATAPDVIVPL
HVDFLAVCLQAKCYALAARWLRRCSRLRPDGATAVSATDVHLLFHYAAVV
FVGVKDYPAALHSCRLALAVPAPAPGPFLRVAVATFRYYVLLHLLVAARS
PPPFNFCSYALPLLRNRASEYVQLATAFERMDAAHMRTVFESHRAAFEAH
ATLGVVKQVMQTFTDALVHRLTNSYVTIKLQHVAARVAACHDQPDAHDVL
LRMIQRGTLCARIDDRKRVLRLLHEQQLQQSVQVLQRVEMFRQHVRTDPA
YVGKMLGGSSSRNAGGGSSARATRRTAGASGSSSSSSSAATAAAAAARRA
SDVDMLRLSGRA*
back to top

spliced messenger RNA

>Gchil3546.t1 ID=Gchil3546.t1|Name=Gchil3546.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1539bp|location=Sequence derived from alignment at tig00004378_pilon:1167075..1168712+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGAGGCAGCCATGCACGCGGCGCTGCTTGCGCCCGCGCGGCGCGCCGC
GCCCAACGACAGCCACCCGCAGCGCATCTCGTCGCTGCCGGACGCCGTCG
CCGCGCTCAAGGCGCACGCGCTGCCGTCGTCGCCGTCGCCGTCGCCGCAC
GCCGCCGACCAAGACGCCGACGCCCAAGACGCCGACGCCCAAGACGCCGC
CGCCGCGCGGCTGACGCACGTACGCGCGTCGCACGAGCTGCTGGCGCGCA
CGGCCGACGCCGTGGACGCGGCCGACGCGGCCAGTCTGCACGCGGCGCGC
GCGCAGCTGCATCCGCGCCGCCACACGCTGGCCTACGTCGCCACCCTACA
CGCGTCGTTGGCGCGATTGCGCGCGGATTCTCCCAACGTGGACGCGCTGC
TCGCCGAGTTGCGCGCGTTGGTGGCCAATGCGCCGCGCGGCGCCGCGCTG
CACGCCGCCCCGCGTTGGGTCGGTGCCTGTCGTCACGCCGCGCGCGTCGT
GCTGCAGGCGCGTCATGCCGCCCGCGCGCTGGCGTTGGTGCGAACGTTGC
GCGCCGCCGCCGACCACCTGGCCACTGCGCCCGATGTCATCGTGCCGTTG
CACGTAGACTTTTTGGCCGTGTGCTTGCAGGCAAAGTGCTATGCGCTGGC
TGCGCGTTGGTTGCGACGTTGCTCGCGCCTACGTCCCGATGGTGCCACCG
CCGTTAGCGCCACCGACGTTCACCTGCTCTTTCACTACGCCGCCGTCGTG
TTTGTGGGCGTCAAGGACTACCCCGCCGCCCTGCACAGCTGTCGTCTAGC
GCTGGCCGTGCCTGCGCCGGCCCCCGGCCCCTTTCTTCGCGTCGCCGTGG
CCACCTTTCGCTACTACGTGCTGTTGCATCTTCTGGTGGCCGCCCGATCG
CCGCCGCCCTTCAACTTTTGTTCGTATGCGCTGCCGCTTCTGCGCAACCG
CGCCTCCGAGTATGTGCAACTGGCCACCGCGTTTGAGCGCATGGACGCCG
CCCACATGCGCACCGTCTTTGAATCGCATCGCGCGGCGTTTGAGGCACAC
GCCACGTTGGGTGTGGTCAAACAGGTCATGCAAACGTTCACCGACGCTTT
GGTGCATCGTCTTACCAATTCTTACGTCACCATTAAGCTACAGCACGTGG
CCGCGCGCGTGGCCGCGTGCCACGACCAGCCCGACGCGCACGACGTGCTT
CTGCGCATGATTCAGCGTGGCACCTTGTGTGCACGTATTGACGATCGCAA
ACGCGTGCTACGTCTGTTGCATGAGCAACAGCTGCAACAGAGCGTACAGG
TTTTGCAACGCGTGGAGATGTTTCGCCAACATGTACGCACTGACCCTGCG
TACGTGGGCAAGATGCTTGGCGGAAGCAGCAGCCGCAATGCTGGCGGTGG
GAGCAGCGCGCGCGCGACTCGACGTACGGCGGGTGCTTCCGGTTCATCGT
CGTCGTCGTCTTCGGCAGCCACAGCGGCTGCAGCGGCGGCTCGTCGCGCT
TCCGACGTTGACATGTTGAGGTTGAGTGGTAGAGCTTGA
back to top

protein sequence of Gchil3546.t1

>Gchil3546.t1 ID=Gchil3546.t1|Name=Gchil3546.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=513bp
MEAAMHAALLAPARRAAPNDSHPQRISSLPDAVAALKAHALPSSPSPSPH
AADQDADAQDADAQDAAAARLTHVRASHELLARTADAVDAADAASLHAAR
AQLHPRRHTLAYVATLHASLARLRADSPNVDALLAELRALVANAPRGAAL
HAAPRWVGACRHAARVVLQARHAARALALVRTLRAAADHLATAPDVIVPL
HVDFLAVCLQAKCYALAARWLRRCSRLRPDGATAVSATDVHLLFHYAAVV
FVGVKDYPAALHSCRLALAVPAPAPGPFLRVAVATFRYYVLLHLLVAARS
PPPFNFCSYALPLLRNRASEYVQLATAFERMDAAHMRTVFESHRAAFEAH
ATLGVVKQVMQTFTDALVHRLTNSYVTIKLQHVAARVAACHDQPDAHDVL
LRMIQRGTLCARIDDRKRVLRLLHEQQLQQSVQVLQRVEMFRQHVRTDPA
YVGKMLGGSSSRNAGGGSSARATRRTAGASGSSSSSSSAATAAAAAARRA
SDVDMLRLSGRA*
back to top

mRNA from alignment at tig00004378_pilon:1167075..1168712+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil3546.t1 ID=Gchil3546.t1|Name=Gchil3546.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1638bp|location=Sequence derived from alignment at tig00004378_pilon:1167075..1168712+ (Gracilaria chilensis NLEC103_M9 male)
ATGGAGGCAGCCATGCACGCGGCGCTGCTTGCGCCCGCGCGGCGCGCCGC
GCCCAACGACAGCCACCCGCAGCGCATCTCGTCGCTGCCGGACGCCGTCG
CCGCGCTCAAGGCGCACGCGCTGCCGTCGTCGCCGTCGCCGTCGCCGCAC
GCCGCCGACCAAGACGCCGACGCCCAAGACGCCGACGCCCAAGACGCCGC
CGCCGCGCGGCTGACGCACGTACGCGCGTCGCACGAGCTGCTGGCGCGCA
CGGCCGACGCCGTGGACGCGGCCGACGCGGCCAGTCTGCACGCGGCGCGC
GCGCAGCTGCATCCGCGCCGCCACACGCTGGCCTACGTCGCCACCCTACA
CGCGTCGTTGGCGCGATTGCGCGCGGATTCTCCCAACGTGGACGCGCTGC
TCGCCGAGTTGCGCGCGTTGGTGGCCAATGCGCCGCGCGGCGCCGCGCTG
CACGCCGCCCCGCGTTGGGTCGGTGCCTGTCGTCACGCCGCGCGCGTCGT
GCTGCAGGCGCGTCATGCCGCCCGCGCGCTGGCGTTGGTGCGAACGTTGC
GCGCCGCCGCCGACCACCTGGCCACTGCGCCCGATGTCATCGTGCCGTTG
CACGTAGACTTTTTGGCCGTGTGCTTGCAGGCAAAGTGCTATGCGCTGGC
TGCGCGTTGGTTGCGACGTTGCTCGCGCCTACGTCCCGATGGTGCCACCG
CCGTTAGCGCCACCGACGTTCACCTGCTCTTTCACTACGCCGCCGTCGTG
TTTGTGGGCGTCAAGGACTACCCCGCCGCCCTGCACAGCTGTCGTCTAGC
GCTGGCCGTGCCTGCGCCGGCCCCCGGCCCCTTTCTTCGCGTCGCCGTGG
CCACCTTTCGCTACTACGTGCTGTTGCATCTTCTGGTGGCCGCCCGATCG
CCGCCGCCCTTCAACTTTTGTTCGTATGCGCTGCCGCTTCTGCGCAACCG
CGCCTCCGAGTATGTGCAACTGGCCACCGCGTTTGAGCGCATGGACGCCG
CCCACATGCGCACCGTCTTTGAATCGCATCGCGCGGCGTTTGAGGCACAC
GCCACGTTGGGTGTGGTCAAACAGGTCATGCAAACGTTCACCGACGCTTT
GGTGCATCGTCTTACCAATTCTTACGTCACCATTAAGCTACAGCACGTGG
CCGCGCGCGTGGCCGCGTGCCACGACCAGCCCGACGCGCACGACGTGCTT
CTGCGCATGATTCAGCGTGGCACCTTGTGTGCACGTATTGACGATCGCAA
ACGCGTGCTACGTCTGTTGCATGAGGTAATCACGCATGCATCGTGCTGGc
aacagcaacagctactacaacttcatccacagcatcatcatcatcatcat
cTTGTTGTTCTTCAAGTGCAACAGCAACAGCTGCAACAGAGCGTACAGGT
TTTGCAACGCGTGGAGATGTTTCGCCAACATGTACGCACTGACCCTGCGT
ACGTGGGCAAGATGCTTGGCGGAAGCAGCAGCCGCAATGCTGGCGGTGGG
AGCAGCGCGCGCGCGACTCGACGTACGGCGGGTGCTTCCGGTTCATCGTC
GTCGTCGTCTTCGGCAGCCACAGCGGCTGCAGCGGCGGCTCGTCGCGCTT
CCGACGTTGACATGTTGAGGTTGAGTGGTAGAGCTTGA
back to top

Coding sequence (CDS) from alignment at tig00004378_pilon:1167075..1168712+

>Gchil3546.t1 ID=Gchil3546.t1|Name=Gchil3546.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1539bp|location=Sequence derived from alignment at tig00004378_pilon:1167075..1168712+ (Gracilaria chilensis NLEC103_M9 male)
ATGGAGGCAGCCATGCACGCGGCGCTGCTTGCGCCCGCGCGGCGCGCCGC
GCCCAACGACAGCCACCCGCAGCGCATCTCGTCGCTGCCGGACGCCGTCG
CCGCGCTCAAGGCGCACGCGCTGCCGTCGTCGCCGTCGCCGTCGCCGCAC
GCCGCCGACCAAGACGCCGACGCCCAAGACGCCGACGCCCAAGACGCCGC
CGCCGCGCGGCTGACGCACGTACGCGCGTCGCACGAGCTGCTGGCGCGCA
CGGCCGACGCCGTGGACGCGGCCGACGCGGCCAGTCTGCACGCGGCGCGC
GCGCAGCTGCATCCGCGCCGCCACACGCTGGCCTACGTCGCCACCCTACA
CGCGTCGTTGGCGCGATTGCGCGCGGATTCTCCCAACGTGGACGCGCTGC
TCGCCGAGTTGCGCGCGTTGGTGGCCAATGCGCCGCGCGGCGCCGCGCTG
CACGCCGCCCCGCGTTGGGTCGGTGCCTGTCGTCACGCCGCGCGCGTCGT
GCTGCAGGCGCGTCATGCCGCCCGCGCGCTGGCGTTGGTGCGAACGTTGC
GCGCCGCCGCCGACCACCTGGCCACTGCGCCCGATGTCATCGTGCCGTTG
CACGTAGACTTTTTGGCCGTGTGCTTGCAGGCAAAGTGCTATGCGCTGGC
TGCGCGTTGGTTGCGACGTTGCTCGCGCCTACGTCCCGATGGTGCCACCG
CCGTTAGCGCCACCGACGTTCACCTGCTCTTTCACTACGCCGCCGTCGTG
TTTGTGGGCGTCAAGGACTACCCCGCCGCCCTGCACAGCTGTCGTCTAGC
GCTGGCCGTGCCTGCGCCGGCCCCCGGCCCCTTTCTTCGCGTCGCCGTGG
CCACCTTTCGCTACTACGTGCTGTTGCATCTTCTGGTGGCCGCCCGATCG
CCGCCGCCCTTCAACTTTTGTTCGTATGCGCTGCCGCTTCTGCGCAACCG
CGCCTCCGAGTATGTGCAACTGGCCACCGCGTTTGAGCGCATGGACGCCG
CCCACATGCGCACCGTCTTTGAATCGCATCGCGCGGCGTTTGAGGCACAC
GCCACGTTGGGTGTGGTCAAACAGGTCATGCAAACGTTCACCGACGCTTT
GGTGCATCGTCTTACCAATTCTTACGTCACCATTAAGCTACAGCACGTGG
CCGCGCGCGTGGCCGCGTGCCACGACCAGCCCGACGCGCACGACGTGCTT
CTGCGCATGATTCAGCGTGGCACCTTGTGTGCACGTATTGACGATCGCAA
ACGCGTGCTACGTCTGTTGCATGAGCAACAGCTGCAACAGAGCGTACAGG
TTTTGCAACGCGTGGAGATGTTTCGCCAACATGTACGCACTGACCCTGCG
TACGTGGGCAAGATGCTTGGCGGAAGCAGCAGCCGCAATGCTGGCGGTGG
GAGCAGCGCGCGCGCGACTCGACGTACGGCGGGTGCTTCCGGTTCATCGT
CGTCGTCGTCTTCGGCAGCCACAGCGGCTGCAGCGGCGGCTCGTCGCGCT
TCCGACGTTGACATGTTGAGGTTGAGTGGTAGAGCTTGA
back to top