Gchil3542.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil3542.t1
Unique NameGchil3542.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length251
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004378_piloncontigtig00004378_pilon:1159429..1160280 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil3542Gchil3542Gracilaria chilensis NLEC103_M9 malegenetig00004378_pilon 1159429..1160280 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3542.t1Gchil3542.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004378_pilon 1159429..1160280 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3542.t1.stop1Gchil3542.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004378_pilon 1159429..1159431 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3542.t1.CDS1Gchil3542.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004378_pilon 1159429..1159517 -
Gchil3542.t1.CDS2Gchil3542.t1.CDS2Gracilaria chilensis NLEC103_M9 maleCDStig00004378_pilon 1159617..1160280 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3542.t1.exon1Gchil3542.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004378_pilon 1159429..1159517 -
Gchil3542.t1.exon2Gchil3542.t1.exon2Gracilaria chilensis NLEC103_M9 maleexontig00004378_pilon 1159617..1160280 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3542.t1.intron1Gchil3542.t1.intron1Gracilaria chilensis NLEC103_M9 maleintrontig00004378_pilon 1159518..1159616 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3542.t1.start1Gchil3542.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004378_pilon 1160278..1160280 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil3542.t1 ID=Gchil3542.t1|Name=Gchil3542.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=251bp
MKFRSKDNKFSGTSDEDWEYYLAQYQKLCVENRVKAGDRVMYLHHMLQGQ
ALQFYYRNIDGKENNWGAVVAMFREVFASPAKMERTSQKLQGLHISQFET
KSRTEAQALYDLARDVERLVPMAHHENRSDRSMRVFLQNVVKGREWARNV
AATSHMEELSYLKYLSLLEQAQTQWEEHDPSPSTGRSDFRKSRWNVNYNN
HGRYGRHPHTARQRKSESPPSSAYYESKNKSVNVSEVLVEFARDLQEALD
*
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spliced messenger RNA

>Gchil3542.t1 ID=Gchil3542.t1|Name=Gchil3542.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=753bp|location=Sequence derived from alignment at tig00004378_pilon:1159429..1160280- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAAGTTCCGAAGCAAGGACAATAAGTTTTCTGGCACATCGGATGAGGA
TTGGGAATACTATCTGGCACAATACCAGAAATTATGCGTAGAGAATCGAG
TGAAAGCGGGGGACCGTGTTATGTACCTCCATCATATGCTTCAAGGACAG
GCCCTCCAATTCTATTACCGTAATATTGACGGTAAAGAGAATAACTGGGG
AGCAGTTGTAGCGATGTTCCGAGAAGTTTTTGCCTCTCCTGCCAAGATGG
AACGCACGTCTCAGAAGCTTCAAGGGTTGCACATTTCGCAATTCGAAACG
AAGAGCCGCACAGAAGCCCAAGCTCTGTATGACCTGGCACGTGATGTAGA
ACGTCTCGTCCCTATGGCCCACCATGAGAACCGATCTGACCGTAGCATGC
GTGTATTCCTACAAAACGTAGTCAAAGGTCGCGAATGGGCTCGAAATGTT
GCTGCCACGTCTCACATGGAAGAATTGAGCTATTTAAAATATTTGTCCTT
GCTGGAACAAGCTCAAACGCAATGGGAGGAGCACGACCCTTCGCCTTCTA
CAGGACGTTCTGATTTCCGCAAATCCAGGTGGAACGTGAACTACAATAAT
CATGGACGTTACGGTCGTCATCCTCATACCGCTCGCCAGAGAAAGTCCGA
GTCTCCTCCCTCGTCAGCATACTACGAGTCGAAGAACAAGTCCGTCAACG
TCAGTGAAGTACTTGTCGAATTTGCTCGCGATTTACAGGAGGCACTTGAT
TAA
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protein sequence of Gchil3542.t1

>Gchil3542.t1 ID=Gchil3542.t1|Name=Gchil3542.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=251bp
MKFRSKDNKFSGTSDEDWEYYLAQYQKLCVENRVKAGDRVMYLHHMLQGQ
ALQFYYRNIDGKENNWGAVVAMFREVFASPAKMERTSQKLQGLHISQFET
KSRTEAQALYDLARDVERLVPMAHHENRSDRSMRVFLQNVVKGREWARNV
AATSHMEELSYLKYLSLLEQAQTQWEEHDPSPSTGRSDFRKSRWNVNYNN
HGRYGRHPHTARQRKSESPPSSAYYESKNKSVNVSEVLVEFARDLQEALD
*
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mRNA from alignment at tig00004378_pilon:1159429..1160280-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil3542.t1 ID=Gchil3542.t1|Name=Gchil3542.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=852bp|location=Sequence derived from alignment at tig00004378_pilon:1159429..1160280- (Gracilaria chilensis NLEC103_M9 male)
ATGAAGTTCCGAAGCAAGGACAATAAGTTTTCTGGCACATCGGATGAGGA
TTGGGAATACTATCTGGCACAATACCAGAAATTATGCGTAGAGAATCGAG
TGAAAGCGGGGGACCGTGTTATGTACCTCCATCATATGCTTCAAGGACAG
GCCCTCCAATTCTATTACCGTAATATTGACGGTAAAGAGAATAACTGGGG
AGCAGTTGTAGCGATGTTCCGAGAAGTTTTTGCCTCTCCTGCCAAGATGG
AACGCACGTCTCAGAAGCTTCAAGGGTTGCACATTTCGCAATTCGAAACG
AAGAGCCGCACAGAAGCCCAAGCTCTGTATGACCTGGCACGTGATGTAGA
ACGTCTCGTCCCTATGGCCCACCATGAGAACCGATCTGACCGTAGCATGC
GTGTATTCCTACAAAACGTAGTCAAAGGTCGCGAATGGGCTCGAAATGTT
GCTGCCACGTCTCACATGGAAGAATTGAGCTATTTAAAATATTTGTCCTT
GCTGGAACAAGCTCAAACGCAATGGGAGGAGCACGACCCTTCGCCTTCTA
CAGGACGTTCTGATTTCCGCAAATCCAGGTGGAACGTGAACTACAATAAT
CATGGACGTTACGGTCGTCATCCTCATACCGCTCGCCAGAGAAAGTCCGA
GTCTCCTCCCTCGTGTTCTTCAAACTGCATGTGCTTCAACTGCGGAAAGG
AGGACTGTCGTGTCTCTCGGTGAAAAGAACAACTCAATTTCGAACGTATC
GCACCGAATAAAGCAGCATACTACGAGTCGAAGAACAAGTCCGTCAACGT
CAGTGAAGTACTTGTCGAATTTGCTCGCGATTTACAGGAGGCACTTGATT
AA
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Coding sequence (CDS) from alignment at tig00004378_pilon:1159429..1160280-

>Gchil3542.t1 ID=Gchil3542.t1|Name=Gchil3542.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=753bp|location=Sequence derived from alignment at tig00004378_pilon:1159429..1160280- (Gracilaria chilensis NLEC103_M9 male)
ATGAAGTTCCGAAGCAAGGACAATAAGTTTTCTGGCACATCGGATGAGGA
TTGGGAATACTATCTGGCACAATACCAGAAATTATGCGTAGAGAATCGAG
TGAAAGCGGGGGACCGTGTTATGTACCTCCATCATATGCTTCAAGGACAG
GCCCTCCAATTCTATTACCGTAATATTGACGGTAAAGAGAATAACTGGGG
AGCAGTTGTAGCGATGTTCCGAGAAGTTTTTGCCTCTCCTGCCAAGATGG
AACGCACGTCTCAGAAGCTTCAAGGGTTGCACATTTCGCAATTCGAAACG
AAGAGCCGCACAGAAGCCCAAGCTCTGTATGACCTGGCACGTGATGTAGA
ACGTCTCGTCCCTATGGCCCACCATGAGAACCGATCTGACCGTAGCATGC
GTGTATTCCTACAAAACGTAGTCAAAGGTCGCGAATGGGCTCGAAATGTT
GCTGCCACGTCTCACATGGAAGAATTGAGCTATTTAAAATATTTGTCCTT
GCTGGAACAAGCTCAAACGCAATGGGAGGAGCACGACCCTTCGCCTTCTA
CAGGACGTTCTGATTTCCGCAAATCCAGGTGGAACGTGAACTACAATAAT
CATGGACGTTACGGTCGTCATCCTCATACCGCTCGCCAGAGAAAGTCCGA
GTCTCCTCCCTCGTCAGCATACTACGAGTCGAAGAACAAGTCCGTCAACG
TCAGTGAAGTACTTGTCGAATTTGCTCGCGATTTACAGGAGGCACTTGAT
TAA
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