Gchil3541.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil3541.t1
Unique NameGchil3541.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length466
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004378_piloncontigtig00004378_pilon:1090959..1092356 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil3541Gchil3541Gracilaria chilensis NLEC103_M9 malegenetig00004378_pilon 1090959..1092356 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3541.t1.stop1Gchil3541.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004378_pilon 1090959..1090961 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3541.t1.CDS1Gchil3541.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004378_pilon 1090959..1092356 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3541.t1.exon1Gchil3541.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004378_pilon 1090959..1092356 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3541.t1.start1Gchil3541.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004378_pilon 1092354..1092356 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3541.t1Gchil3541.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004378_pilon 1090959..1092356 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil3541.t1 ID=Gchil3541.t1|Name=Gchil3541.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=466bp
MKLCLLVSVVQTCLLAILIRASTLSSQDLTPQLSLQKTVRAGSCFAAFVT
CPSTRVSNCAAGSSSTTACPARQVSDNDNYFYDNLKAKAGDREFFLPMPT
TGTALNNIQSTGVSFALTYDALHPRLIGSRTYTPIGPPGWDEFPSDSRQR
GHLWAKDLGGSGTYYLNVITLSSQVNQEMNNVFECKVKEAFELMDLDKLS
TVFVTILVRYNSNAKASKKVFLFADVEYYSSGGWVKEPWLGMEIKNKKGE
KAKRLFPDRTSTIKSASKKMTADSSCTNQRTVVNTLSFIGYMSQTNNDWW
TFSQGAGGPRISMDDGELWFFSDRQSIASSSATITSKRQYPVNSGLSFRF
QFSPYRFYSSETTLEFAGGIALQFRSGASPTWNKVTGSTFTRLATSSMTS
GPGWYDIHVVYTRTRVILWERGVKKFDVSNTIGSFLPFKATFKNSDINSK
TAFKISNVAVHESLF*
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spliced messenger RNA

>Gchil3541.t1 ID=Gchil3541.t1|Name=Gchil3541.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1398bp|location=Sequence derived from alignment at tig00004378_pilon:1090959..1092356- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAAGCTGTGTCTTTTGGTTTCTGTTGTACAGACATGTCTTCTAGCCAT
TTTAATTCGTGCATCTACACTTTCGAGTCAAGATTTGACCCCACAACTTT
CTCTACAAAAGACAGTTCGCGCAGGATCTTGCTTCGCCGCTTTTGTCACA
TGCCCGTCAACTCGAGTGTCGAATTGTGCTGCAGGTTCCTCATCAACGAC
TGCCTGTCCAGCTCGGCAGGTGAGTGACAATGACAATTACTTTTACGATA
ATCTCAAAGCCAAAGCCGGTGATCGCGAGTTTTTTCTTCCAATGCCGACG
ACAGGAACTGCCTTGAACAACATTCAGTCTACCGGTGTTTCTTTTGCTCT
TACCTATGATGCTCTCCATCCTCGACTCATTGGATCCAGGACATACACTC
CGATTGGGCCGCCAGGATGGGACGAGTTTCCTTCTGACAGCAGGCAACGC
GGTCATCTGTGGGCAAAGGATCTGGGTGGATCAGGGACGTACTATTTGAA
CGTCATTACTCTTTCAAGCCAAGTAAATCAGGAGATGAATAATGTGTTTG
AGTGCAAGGTAAAGGAGGCCTTCGAGCTCATGGACTTAGACAAGTTGTCC
ACTGTATTTGTCACCATCTTGGTGCGCTATAACTCCAACGCTAAGGCAAG
CAAGAAAGTATTTCTGTTCGCTGACGTCGAGTACTACTCGTCAGGGGGCT
GGGTGAAAGAGCCGTGGCTTGGGATGGAGATTAAGAACAAGAAGGGTGAA
AAGGCGAAACGCTTGTTTCCCGATCGTACGTCCACGATTAAGTCTGCCAG
CAAAAAAATGACAGCAGACTCCTCATGCACAAATCAGAGAACGGTAGTCA
ACACGCTGAGTTTCATCGGGTATATGTCGCAAACTAACAATGATTGGTGG
ACATTTTCCCAAGGTGCAGGTGGGCCAAGGATCTCGATGGATGACGGAGA
GCTTTGGTTCTTTTCAGACAGGCAGTCCATTGCTTCTTCGAGTGCAACAA
TCACTTCGAAGCGTCAATACCCGGTGAACAGCGGGCTTTCGTTCAGGTTC
CAATTCTCACCGTACCGCTTCTATTCGAGCGAGACAACGTTGGAATTTGC
TGGAGGGATCGCTTTACAGTTCCGTTCCGGGGCGTCTCCCACTTGGAACA
AGGTAACAGGGTCGACGTTTACCAGACTGGCTACGAGCTCCATGACTTCC
GGTCCCGGATGGTATGACATTCACGTGGTGTACACAAGGACGAGAGTGAT
TTTGTGGGAGCGAGGTGTGAAGAAGTTCGACGTGTCCAATACGATAGGAA
GTTTCCTTCCGTTTAAGGCGACCTTTAAGAACAGTGACATAAATTCGAAA
ACTGCGTTTAAGATTTCCAACGTGGCTGTTCATGAAAGTCTCTTCTAG
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protein sequence of Gchil3541.t1

>Gchil3541.t1 ID=Gchil3541.t1|Name=Gchil3541.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=466bp
MKLCLLVSVVQTCLLAILIRASTLSSQDLTPQLSLQKTVRAGSCFAAFVT
CPSTRVSNCAAGSSSTTACPARQVSDNDNYFYDNLKAKAGDREFFLPMPT
TGTALNNIQSTGVSFALTYDALHPRLIGSRTYTPIGPPGWDEFPSDSRQR
GHLWAKDLGGSGTYYLNVITLSSQVNQEMNNVFECKVKEAFELMDLDKLS
TVFVTILVRYNSNAKASKKVFLFADVEYYSSGGWVKEPWLGMEIKNKKGE
KAKRLFPDRTSTIKSASKKMTADSSCTNQRTVVNTLSFIGYMSQTNNDWW
TFSQGAGGPRISMDDGELWFFSDRQSIASSSATITSKRQYPVNSGLSFRF
QFSPYRFYSSETTLEFAGGIALQFRSGASPTWNKVTGSTFTRLATSSMTS
GPGWYDIHVVYTRTRVILWERGVKKFDVSNTIGSFLPFKATFKNSDINSK
TAFKISNVAVHESLF*
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mRNA from alignment at tig00004378_pilon:1090959..1092356-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil3541.t1 ID=Gchil3541.t1|Name=Gchil3541.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1398bp|location=Sequence derived from alignment at tig00004378_pilon:1090959..1092356- (Gracilaria chilensis NLEC103_M9 male)
ATGAAGCTGTGTCTTTTGGTTTCTGTTGTACAGACATGTCTTCTAGCCAT
TTTAATTCGTGCATCTACACTTTCGAGTCAAGATTTGACCCCACAACTTT
CTCTACAAAAGACAGTTCGCGCAGGATCTTGCTTCGCCGCTTTTGTCACA
TGCCCGTCAACTCGAGTGTCGAATTGTGCTGCAGGTTCCTCATCAACGAC
TGCCTGTCCAGCTCGGCAGGTGAGTGACAATGACAATTACTTTTACGATA
ATCTCAAAGCCAAAGCCGGTGATCGCGAGTTTTTTCTTCCAATGCCGACG
ACAGGAACTGCCTTGAACAACATTCAGTCTACCGGTGTTTCTTTTGCTCT
TACCTATGATGCTCTCCATCCTCGACTCATTGGATCCAGGACATACACTC
CGATTGGGCCGCCAGGATGGGACGAGTTTCCTTCTGACAGCAGGCAACGC
GGTCATCTGTGGGCAAAGGATCTGGGTGGATCAGGGACGTACTATTTGAA
CGTCATTACTCTTTCAAGCCAAGTAAATCAGGAGATGAATAATGTGTTTG
AGTGCAAGGTAAAGGAGGCCTTCGAGCTCATGGACTTAGACAAGTTGTCC
ACTGTATTTGTCACCATCTTGGTGCGCTATAACTCCAACGCTAAGGCAAG
CAAGAAAGTATTTCTGTTCGCTGACGTCGAGTACTACTCGTCAGGGGGCT
GGGTGAAAGAGCCGTGGCTTGGGATGGAGATTAAGAACAAGAAGGGTGAA
AAGGCGAAACGCTTGTTTCCCGATCGTACGTCCACGATTAAGTCTGCCAG
CAAAAAAATGACAGCAGACTCCTCATGCACAAATCAGAGAACGGTAGTCA
ACACGCTGAGTTTCATCGGGTATATGTCGCAAACTAACAATGATTGGTGG
ACATTTTCCCAAGGTGCAGGTGGGCCAAGGATCTCGATGGATGACGGAGA
GCTTTGGTTCTTTTCAGACAGGCAGTCCATTGCTTCTTCGAGTGCAACAA
TCACTTCGAAGCGTCAATACCCGGTGAACAGCGGGCTTTCGTTCAGGTTC
CAATTCTCACCGTACCGCTTCTATTCGAGCGAGACAACGTTGGAATTTGC
TGGAGGGATCGCTTTACAGTTCCGTTCCGGGGCGTCTCCCACTTGGAACA
AGGTAACAGGGTCGACGTTTACCAGACTGGCTACGAGCTCCATGACTTCC
GGTCCCGGATGGTATGACATTCACGTGGTGTACACAAGGACGAGAGTGAT
TTTGTGGGAGCGAGGTGTGAAGAAGTTCGACGTGTCCAATACGATAGGAA
GTTTCCTTCCGTTTAAGGCGACCTTTAAGAACAGTGACATAAATTCGAAA
ACTGCGTTTAAGATTTCCAACGTGGCTGTTCATGAAAGTCTCTTCTAG
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Coding sequence (CDS) from alignment at tig00004378_pilon:1090959..1092356-

>Gchil3541.t1 ID=Gchil3541.t1|Name=Gchil3541.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1398bp|location=Sequence derived from alignment at tig00004378_pilon:1090959..1092356- (Gracilaria chilensis NLEC103_M9 male)
ATGAAGCTGTGTCTTTTGGTTTCTGTTGTACAGACATGTCTTCTAGCCAT
TTTAATTCGTGCATCTACACTTTCGAGTCAAGATTTGACCCCACAACTTT
CTCTACAAAAGACAGTTCGCGCAGGATCTTGCTTCGCCGCTTTTGTCACA
TGCCCGTCAACTCGAGTGTCGAATTGTGCTGCAGGTTCCTCATCAACGAC
TGCCTGTCCAGCTCGGCAGGTGAGTGACAATGACAATTACTTTTACGATA
ATCTCAAAGCCAAAGCCGGTGATCGCGAGTTTTTTCTTCCAATGCCGACG
ACAGGAACTGCCTTGAACAACATTCAGTCTACCGGTGTTTCTTTTGCTCT
TACCTATGATGCTCTCCATCCTCGACTCATTGGATCCAGGACATACACTC
CGATTGGGCCGCCAGGATGGGACGAGTTTCCTTCTGACAGCAGGCAACGC
GGTCATCTGTGGGCAAAGGATCTGGGTGGATCAGGGACGTACTATTTGAA
CGTCATTACTCTTTCAAGCCAAGTAAATCAGGAGATGAATAATGTGTTTG
AGTGCAAGGTAAAGGAGGCCTTCGAGCTCATGGACTTAGACAAGTTGTCC
ACTGTATTTGTCACCATCTTGGTGCGCTATAACTCCAACGCTAAGGCAAG
CAAGAAAGTATTTCTGTTCGCTGACGTCGAGTACTACTCGTCAGGGGGCT
GGGTGAAAGAGCCGTGGCTTGGGATGGAGATTAAGAACAAGAAGGGTGAA
AAGGCGAAACGCTTGTTTCCCGATCGTACGTCCACGATTAAGTCTGCCAG
CAAAAAAATGACAGCAGACTCCTCATGCACAAATCAGAGAACGGTAGTCA
ACACGCTGAGTTTCATCGGGTATATGTCGCAAACTAACAATGATTGGTGG
ACATTTTCCCAAGGTGCAGGTGGGCCAAGGATCTCGATGGATGACGGAGA
GCTTTGGTTCTTTTCAGACAGGCAGTCCATTGCTTCTTCGAGTGCAACAA
TCACTTCGAAGCGTCAATACCCGGTGAACAGCGGGCTTTCGTTCAGGTTC
CAATTCTCACCGTACCGCTTCTATTCGAGCGAGACAACGTTGGAATTTGC
TGGAGGGATCGCTTTACAGTTCCGTTCCGGGGCGTCTCCCACTTGGAACA
AGGTAACAGGGTCGACGTTTACCAGACTGGCTACGAGCTCCATGACTTCC
GGTCCCGGATGGTATGACATTCACGTGGTGTACACAAGGACGAGAGTGAT
TTTGTGGGAGCGAGGTGTGAAGAAGTTCGACGTGTCCAATACGATAGGAA
GTTTCCTTCCGTTTAAGGCGACCTTTAAGAACAGTGACATAAATTCGAAA
ACTGCGTTTAAGATTTCCAACGTGGCTGTTCATGAAAGTCTCTTCTAG
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