Gchil3540.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil3540.t1
Unique NameGchil3540.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length292
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004378_piloncontigtig00004378_pilon:1088400..1089275 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog13333.ERN13951
PFAMsDUF455
Max annot lvl35493|Streptophyta
Evalue3.43e-63
EggNOG OGsCOG2833@1|root,2QU9I@2759|Eukaryota,37JBY@33090|Viridiplantae,3GE8S@35493|Streptophyta
DescriptionProtein of unknown function (DUF455)
COG categoryS
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil3540Gchil3540Gracilaria chilensis NLEC103_M9 malegenetig00004378_pilon 1088400..1089275 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3540.t1.stop1Gchil3540.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004378_pilon 1088400..1088402 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3540.t1.CDS1Gchil3540.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004378_pilon 1088400..1089275 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3540.t1.exon1Gchil3540.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004378_pilon 1088400..1089275 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3540.t1.start1Gchil3540.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004378_pilon 1089273..1089275 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3540.t1Gchil3540.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004378_pilon 1088400..1089275 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil3540.t1 ID=Gchil3540.t1|Name=Gchil3540.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=292bp
MSHLTSTSVSSYAFRVLTTAAPSDKVRLTQAANNSWEKLRNVGAIHIPPD
RPSRPELPHIVPPSQIPSVKQSNAPANVYHLHSLAHVELNAIDLCFDTML
RFESEIPTKDRDEWFEDWLSIASDEARHFSYLQERLIALGSSYGALPAHD
IIWKSANVSRGCLHERLALGQLVAEAKGLDAGPKLVERLVGLGDNNSAAI
VRQIADEEIRHVQLGVKWFLKECDRLDIDSISTFHEIALRLANPGAFTKP
FNEKRRREAGMTPEWYMPVAEEVERQRKERAALRRNNTLKR*
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spliced messenger RNA

>Gchil3540.t1 ID=Gchil3540.t1|Name=Gchil3540.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=876bp|location=Sequence derived from alignment at tig00004378_pilon:1088400..1089275- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCACATCTTACATCCACATCTGTTTCATCTTACGCATTTCGCGTCCT
AACAACCGCAGCTCCTTCCGACAAAGTTCGGTTGACTCAAGCTGCAAACA
ACTCTTGGGAAAAGTTACGGAATGTTGGAGCCATTCACATACCTCCCGAC
CGTCCATCAAGACCGGAGCTCCCGCATATTGTTCCCCCATCTCAAATACC
CAGCGTGAAGCAATCAAACGCTCCAGCAAATGTGTATCACTTGCATTCGC
TTGCTCACGTAGAGTTAAATGCTATTGATCTCTGTTTTGATACAATGCTC
CGCTTTGAAAGCGAAATTCCAACGAAAGACCGCGATGAATGGTTTGAGGA
CTGGCTATCGATCGCATCGGATGAAGCACGCCATTTTAGTTATTTACAGG
AGCGCCTCATTGCATTAGGCTCATCCTATGGTGCATTACCTGCGCACGAT
ATCATTTGGAAGTCGGCCAATGTGTCGAGAGGCTGTCTACACGAAAGGCT
CGCGCTGGGACAGTTAGTCGCAGAAGCCAAAGGGCTCGACGCTGGTCCAA
AATTAGTGGAGCGATTGGTTGGTCTTGGGGACAACAACTCCGCGGCTATT
GTACGTCAGATCGCAGATGAAGAAATTCGACATGTGCAACTCGGAGTTAA
GTGGTTCCTCAAGGAATGTGACAGGCTAGACATTGACTCCATTAGCACTT
TCCATGAGATTGCATTGCGACTGGCAAATCCGGGCGCTTTCACGAAACCG
TTCAACGAAAAAAGACGACGCGAAGCTGGGATGACACCAGAATGGTACAT
GCCAGTTGCGGAAGAAGTGGAAAGGCAGCGCAAGGAAAGAGCAGCGTTGC
GGCGAAATAATACCCTGAAGAGGTAA
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protein sequence of Gchil3540.t1

>Gchil3540.t1 ID=Gchil3540.t1|Name=Gchil3540.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=292bp
MSHLTSTSVSSYAFRVLTTAAPSDKVRLTQAANNSWEKLRNVGAIHIPPD
RPSRPELPHIVPPSQIPSVKQSNAPANVYHLHSLAHVELNAIDLCFDTML
RFESEIPTKDRDEWFEDWLSIASDEARHFSYLQERLIALGSSYGALPAHD
IIWKSANVSRGCLHERLALGQLVAEAKGLDAGPKLVERLVGLGDNNSAAI
VRQIADEEIRHVQLGVKWFLKECDRLDIDSISTFHEIALRLANPGAFTKP
FNEKRRREAGMTPEWYMPVAEEVERQRKERAALRRNNTLKR*
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mRNA from alignment at tig00004378_pilon:1088400..1089275-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil3540.t1 ID=Gchil3540.t1|Name=Gchil3540.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=876bp|location=Sequence derived from alignment at tig00004378_pilon:1088400..1089275- (Gracilaria chilensis NLEC103_M9 male)
ATGTCACATCTTACATCCACATCTGTTTCATCTTACGCATTTCGCGTCCT
AACAACCGCAGCTCCTTCCGACAAAGTTCGGTTGACTCAAGCTGCAAACA
ACTCTTGGGAAAAGTTACGGAATGTTGGAGCCATTCACATACCTCCCGAC
CGTCCATCAAGACCGGAGCTCCCGCATATTGTTCCCCCATCTCAAATACC
CAGCGTGAAGCAATCAAACGCTCCAGCAAATGTGTATCACTTGCATTCGC
TTGCTCACGTAGAGTTAAATGCTATTGATCTCTGTTTTGATACAATGCTC
CGCTTTGAAAGCGAAATTCCAACGAAAGACCGCGATGAATGGTTTGAGGA
CTGGCTATCGATCGCATCGGATGAAGCACGCCATTTTAGTTATTTACAGG
AGCGCCTCATTGCATTAGGCTCATCCTATGGTGCATTACCTGCGCACGAT
ATCATTTGGAAGTCGGCCAATGTGTCGAGAGGCTGTCTACACGAAAGGCT
CGCGCTGGGACAGTTAGTCGCAGAAGCCAAAGGGCTCGACGCTGGTCCAA
AATTAGTGGAGCGATTGGTTGGTCTTGGGGACAACAACTCCGCGGCTATT
GTACGTCAGATCGCAGATGAAGAAATTCGACATGTGCAACTCGGAGTTAA
GTGGTTCCTCAAGGAATGTGACAGGCTAGACATTGACTCCATTAGCACTT
TCCATGAGATTGCATTGCGACTGGCAAATCCGGGCGCTTTCACGAAACCG
TTCAACGAAAAAAGACGACGCGAAGCTGGGATGACACCAGAATGGTACAT
GCCAGTTGCGGAAGAAGTGGAAAGGCAGCGCAAGGAAAGAGCAGCGTTGC
GGCGAAATAATACCCTGAAGAGGTAA
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Coding sequence (CDS) from alignment at tig00004378_pilon:1088400..1089275-

>Gchil3540.t1 ID=Gchil3540.t1|Name=Gchil3540.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=876bp|location=Sequence derived from alignment at tig00004378_pilon:1088400..1089275- (Gracilaria chilensis NLEC103_M9 male)
ATGTCACATCTTACATCCACATCTGTTTCATCTTACGCATTTCGCGTCCT
AACAACCGCAGCTCCTTCCGACAAAGTTCGGTTGACTCAAGCTGCAAACA
ACTCTTGGGAAAAGTTACGGAATGTTGGAGCCATTCACATACCTCCCGAC
CGTCCATCAAGACCGGAGCTCCCGCATATTGTTCCCCCATCTCAAATACC
CAGCGTGAAGCAATCAAACGCTCCAGCAAATGTGTATCACTTGCATTCGC
TTGCTCACGTAGAGTTAAATGCTATTGATCTCTGTTTTGATACAATGCTC
CGCTTTGAAAGCGAAATTCCAACGAAAGACCGCGATGAATGGTTTGAGGA
CTGGCTATCGATCGCATCGGATGAAGCACGCCATTTTAGTTATTTACAGG
AGCGCCTCATTGCATTAGGCTCATCCTATGGTGCATTACCTGCGCACGAT
ATCATTTGGAAGTCGGCCAATGTGTCGAGAGGCTGTCTACACGAAAGGCT
CGCGCTGGGACAGTTAGTCGCAGAAGCCAAAGGGCTCGACGCTGGTCCAA
AATTAGTGGAGCGATTGGTTGGTCTTGGGGACAACAACTCCGCGGCTATT
GTACGTCAGATCGCAGATGAAGAAATTCGACATGTGCAACTCGGAGTTAA
GTGGTTCCTCAAGGAATGTGACAGGCTAGACATTGACTCCATTAGCACTT
TCCATGAGATTGCATTGCGACTGGCAAATCCGGGCGCTTTCACGAAACCG
TTCAACGAAAAAAGACGACGCGAAGCTGGGATGACACCAGAATGGTACAT
GCCAGTTGCGGAAGAAGTGGAAAGGCAGCGCAAGGAAAGAGCAGCGTTGC
GGCGAAATAATACCCTGAAGAGGTAA
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