Gchil3536.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gchil3536.t1
Unique Name	Gchil3536.t1
Type	mRNA
Organism	Gracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length	426

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00004378_pilon	contig	tig00004378_pilon:1036232..1037509 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria chilensis NLEC103_M9 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	3075.A0A087SUC2
PFAMs	WD40
Max annot lvl	3041\|Chlorophyta
Evalue	1.72e-19
EggNOG OGs	KOG2444@1\|root,KOG2444@2759\|Eukaryota,37K5W@33090\|Viridiplantae,34KFU@3041\|Chlorophyta
Description	WD domain, G-beta repeat
COG category	S

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gchil3536	Gchil3536	Gracilaria chilensis NLEC103_M9 male	gene	tig00004378_pilon 1036232..1037509 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil3536.t1.start1	Gchil3536.t1.start1	Gracilaria chilensis NLEC103_M9 male	start_codon	tig00004378_pilon 1036232..1036234 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil3536.t1.CDS1	Gchil3536.t1.CDS1	Gracilaria chilensis NLEC103_M9 male	CDS	tig00004378_pilon 1036232..1037509 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil3536.t1.exon1	Gchil3536.t1.exon1	Gracilaria chilensis NLEC103_M9 male	exon	tig00004378_pilon 1036232..1037509 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil3536.t1.stop1	Gchil3536.t1.stop1	Gracilaria chilensis NLEC103_M9 male	stop_codon	tig00004378_pilon 1037507..1037509 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil3536.t1	Gchil3536.t1	Gracilaria chilensis NLEC103_M9 male	polypeptide	tig00004378_pilon 1036232..1037509 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00004378_pilon:1036232..1037509+
coding sequence from alignment at tig00004378_pilon:1036232..1037509+

mRNA sequence

>Gchil3536.t1 ID=Gchil3536.t1|Name=Gchil3536.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=426bp
MKSVGAAWYLGLNDTPICVAAHPKNPCLLSGFSEGEVALNVFSGECGVEG
PLLEQKNIFNVGSSCVQATFHGFERFVVANSEGKLLTFDVSKMAIVGTKW
LPHDEEGNHRTATTFKALDDSNVLVGDDCGGLHIFDARMPQIRAEKAGTS
VSGSSYSCLDQGDYISAIVPVSAFNKDAFLVASGDGTLCAYDLRFQPKPK
LKLQYAFDSFQEDLLSLAVLSKHSLAITGTLTGPLNIYNLRFMDDLFDPD
AAAHVDRLYGHPEAVNVVMEWEEDEDVIISASSDGIIRIIDVPSRKLVGV
LDYPIHPQESKPDSLSSLRRKKTQREQRWPIEDMVRMRGFSQPIFALLGH
GSGIQFCDGSSLVEGESAEHDDSRKEKRREAEEKNEEKNEAEIIGSSSSK
KKKRRRKGFEENKKKTDLPSFFEGL*

spliced messenger RNA

>Gchil3536.t1 ID=Gchil3536.t1|Name=Gchil3536.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1278bp|location=Sequence derived from alignment at tig00004378_pilon:1036232..1037509+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAAAAGCGTTGGTGCGGCTTGGTACTTAGGGCTCAACGACACACCGAT
CTGTGTGGCTGCTCACCCGAAAAATCCATGTTTGCTCTCTGGATTCTCAG
AAGGAGAAGTCGCGTTGAACGTTTTTTCAGGTGAATGTGGAGTTGAGGGT
CCCCTCCTTGAACAGAAAAACATTTTTAATGTCGGAAGTTCTTGTGTTCA
GGCAACTTTTCACGGCTTCGAAAGATTTGTAGTCGCAAACTCTGAGGGAA
AGCTCTTGACTTTTGATGTTTCAAAAATGGCGATTGTAGGAACTAAATGG
CTTCCTCATGATGAGGAAGGTAATCATCGCACTGCAACAACGTTTAAGGC
TCTGGATGACTCGAATGTCCTCGTAGGTGATGACTGTGGTGGCCTTCACA
TCTTCGATGCCCGGATGCCACAAATCAGGGCAGAGAAAGCGGGTACGAGC
GTTAGCGGTTCATCGTACTCATGTCTGGACCAAGGGGACTACATATCTGC
CATTGTTCCAGTCAGTGCATTTAACAAGGATGCGTTCTTGGTGGCGTCAG
GAGACGGTACTCTTTGTGCCTATGATCTTCGATTTCAGCCAAAGCCGAAG
CTAAAACTACAATATGCTTTTGACTCTTTTCAAGAAGATTTACTTTCACT
TGCAGTACTTTCAAAGCACTCGTTGGCTATCACAGGAACTCTCACTGGGC
CTCTCAACATCTACAACCTGCGCTTTATGGATGATTTATTTGATCCCGAT
GCGGCGGCTCATGTAGATAGATTGTACGGACATCCTGAAGCCGTAAATGT
TGTCATGGAATGGGAAGAAGATGAAGATGTCATAATATCAGCGAGTAGCG
ATGGGATCATTCGAATCATTGATGTGCCCAGTCGAAAGCTTGTTGGAGTG
CTTGACTACCCTATACACCCGCAAGAGTCAAAGCCTGACTCCCTTAGCTC
TTTGAGAAGAAAGAAGACACAGAGAGAACAGAGATGGCCCATAGAAGATA
TGGTTAGGATGAGAGGGTTTTCGCAACCTATTTTTGCACTTCTTGGCCAT
GGCTCAGGAATACAATTTTGCGATGGAAGCAGTTTAGTAGAGGGCGAGTC
TGCTGAGCACGATGATTCACgaaaagaaaaaagaagggaagctgaagaaa
agaatgaagagaaaaATGAAGCTGAGATTATAGGATCAAGTTCATCTAAA
AAAAAGAAACGAAGGCGAAAGGGGTTTGAAGAGAACAAGAAGAAAACAGA
CCTGCCAAGCTTCTTTGAAGGTCTCTAG

protein sequence of Gchil3536.t1

>Gchil3536.t1 ID=Gchil3536.t1|Name=Gchil3536.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=426bp
MKSVGAAWYLGLNDTPICVAAHPKNPCLLSGFSEGEVALNVFSGECGVEG
PLLEQKNIFNVGSSCVQATFHGFERFVVANSEGKLLTFDVSKMAIVGTKW
LPHDEEGNHRTATTFKALDDSNVLVGDDCGGLHIFDARMPQIRAEKAGTS
VSGSSYSCLDQGDYISAIVPVSAFNKDAFLVASGDGTLCAYDLRFQPKPK
LKLQYAFDSFQEDLLSLAVLSKHSLAITGTLTGPLNIYNLRFMDDLFDPD
AAAHVDRLYGHPEAVNVVMEWEEDEDVIISASSDGIIRIIDVPSRKLVGV
LDYPIHPQESKPDSLSSLRRKKTQREQRWPIEDMVRMRGFSQPIFALLGH
GSGIQFCDGSSLVEGESAEHDDSRKEKRREAEEKNEEKNEAEIIGSSSSK
KKKRRRKGFEENKKKTDLPSFFEGL*

mRNA from alignment at tig00004378_pilon:1036232..1037509+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gchil3536.t1 ID=Gchil3536.t1|Name=Gchil3536.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1278bp|location=Sequence derived from alignment at tig00004378_pilon:1036232..1037509+ (Gracilaria chilensis NLEC103_M9 male)
ATGAAAAGCGTTGGTGCGGCTTGGTACTTAGGGCTCAACGACACACCGAT
CTGTGTGGCTGCTCACCCGAAAAATCCATGTTTGCTCTCTGGATTCTCAG
AAGGAGAAGTCGCGTTGAACGTTTTTTCAGGTGAATGTGGAGTTGAGGGT
CCCCTCCTTGAACAGAAAAACATTTTTAATGTCGGAAGTTCTTGTGTTCA
GGCAACTTTTCACGGCTTCGAAAGATTTGTAGTCGCAAACTCTGAGGGAA
AGCTCTTGACTTTTGATGTTTCAAAAATGGCGATTGTAGGAACTAAATGG
CTTCCTCATGATGAGGAAGGTAATCATCGCACTGCAACAACGTTTAAGGC
TCTGGATGACTCGAATGTCCTCGTAGGTGATGACTGTGGTGGCCTTCACA
TCTTCGATGCCCGGATGCCACAAATCAGGGCAGAGAAAGCGGGTACGAGC
GTTAGCGGTTCATCGTACTCATGTCTGGACCAAGGGGACTACATATCTGC
CATTGTTCCAGTCAGTGCATTTAACAAGGATGCGTTCTTGGTGGCGTCAG
GAGACGGTACTCTTTGTGCCTATGATCTTCGATTTCAGCCAAAGCCGAAG
CTAAAACTACAATATGCTTTTGACTCTTTTCAAGAAGATTTACTTTCACT
TGCAGTACTTTCAAAGCACTCGTTGGCTATCACAGGAACTCTCACTGGGC
CTCTCAACATCTACAACCTGCGCTTTATGGATGATTTATTTGATCCCGAT
GCGGCGGCTCATGTAGATAGATTGTACGGACATCCTGAAGCCGTAAATGT
TGTCATGGAATGGGAAGAAGATGAAGATGTCATAATATCAGCGAGTAGCG
ATGGGATCATTCGAATCATTGATGTGCCCAGTCGAAAGCTTGTTGGAGTG
CTTGACTACCCTATACACCCGCAAGAGTCAAAGCCTGACTCCCTTAGCTC
TTTGAGAAGAAAGAAGACACAGAGAGAACAGAGATGGCCCATAGAAGATA
TGGTTAGGATGAGAGGGTTTTCGCAACCTATTTTTGCACTTCTTGGCCAT
GGCTCAGGAATACAATTTTGCGATGGAAGCAGTTTAGTAGAGGGCGAGTC
TGCTGAGCACGATGATTCACgaaaagaaaaaagaagggaagctgaagaaa
agaatgaagagaaaaATGAAGCTGAGATTATAGGATCAAGTTCATCTAAA
AAAAAGAAACGAAGGCGAAAGGGGTTTGAAGAGAACAAGAAGAAAACAGA
CCTGCCAAGCTTCTTTGAAGGTCTCTAG

Coding sequence (CDS) from alignment at tig00004378_pilon:1036232..1037509+

>Gchil3536.t1 ID=Gchil3536.t1|Name=Gchil3536.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1278bp|location=Sequence derived from alignment at tig00004378_pilon:1036232..1037509+ (Gracilaria chilensis NLEC103_M9 male)
ATGAAAAGCGTTGGTGCGGCTTGGTACTTAGGGCTCAACGACACACCGAT
CTGTGTGGCTGCTCACCCGAAAAATCCATGTTTGCTCTCTGGATTCTCAG
AAGGAGAAGTCGCGTTGAACGTTTTTTCAGGTGAATGTGGAGTTGAGGGT
CCCCTCCTTGAACAGAAAAACATTTTTAATGTCGGAAGTTCTTGTGTTCA
GGCAACTTTTCACGGCTTCGAAAGATTTGTAGTCGCAAACTCTGAGGGAA
AGCTCTTGACTTTTGATGTTTCAAAAATGGCGATTGTAGGAACTAAATGG
CTTCCTCATGATGAGGAAGGTAATCATCGCACTGCAACAACGTTTAAGGC
TCTGGATGACTCGAATGTCCTCGTAGGTGATGACTGTGGTGGCCTTCACA
TCTTCGATGCCCGGATGCCACAAATCAGGGCAGAGAAAGCGGGTACGAGC
GTTAGCGGTTCATCGTACTCATGTCTGGACCAAGGGGACTACATATCTGC
CATTGTTCCAGTCAGTGCATTTAACAAGGATGCGTTCTTGGTGGCGTCAG
GAGACGGTACTCTTTGTGCCTATGATCTTCGATTTCAGCCAAAGCCGAAG
CTAAAACTACAATATGCTTTTGACTCTTTTCAAGAAGATTTACTTTCACT
TGCAGTACTTTCAAAGCACTCGTTGGCTATCACAGGAACTCTCACTGGGC
CTCTCAACATCTACAACCTGCGCTTTATGGATGATTTATTTGATCCCGAT
GCGGCGGCTCATGTAGATAGATTGTACGGACATCCTGAAGCCGTAAATGT
TGTCATGGAATGGGAAGAAGATGAAGATGTCATAATATCAGCGAGTAGCG
ATGGGATCATTCGAATCATTGATGTGCCCAGTCGAAAGCTTGTTGGAGTG
CTTGACTACCCTATACACCCGCAAGAGTCAAAGCCTGACTCCCTTAGCTC
TTTGAGAAGAAAGAAGACACAGAGAGAACAGAGATGGCCCATAGAAGATA
TGGTTAGGATGAGAGGGTTTTCGCAACCTATTTTTGCACTTCTTGGCCAT
GGCTCAGGAATACAATTTTGCGATGGAAGCAGTTTAGTAGAGGGCGAGTC
TGCTGAGCACGATGATTCACgaaaagaaaaaagaagggaagctgaagaaa
agaatgaagagaaaaATGAAGCTGAGATTATAGGATCAAGTTCATCTAAA
AAAAAGAAACGAAGGCGAAAGGGGTTTGAAGAGAACAAGAAGAAAACAGA
CCTGCCAAGCTTCTTTGAAGGTCTCTAG