Gchil3531.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gchil3531.t1
Unique Name	Gchil3531.t1
Type	mRNA
Organism	Gracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length	618

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00004378_pilon	contig	tig00004378_pilon:934332..936185 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria chilensis NLEC103_M9 male OGS1.0	2022-05-09

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gchil3531	Gchil3531	Gracilaria chilensis NLEC103_M9 male	gene	tig00004378_pilon 934332..936185 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil3531.t1.start1	Gchil3531.t1.start1	Gracilaria chilensis NLEC103_M9 male	start_codon	tig00004378_pilon 934332..934334 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil3531.t1.CDS1	Gchil3531.t1.CDS1	Gracilaria chilensis NLEC103_M9 male	CDS	tig00004378_pilon 934332..936185 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil3531.t1.exon1	Gchil3531.t1.exon1	Gracilaria chilensis NLEC103_M9 male	exon	tig00004378_pilon 934332..936185 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil3531.t1.stop1	Gchil3531.t1.stop1	Gracilaria chilensis NLEC103_M9 male	stop_codon	tig00004378_pilon 936183..936185 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil3531.t1	Gchil3531.t1	Gracilaria chilensis NLEC103_M9 male	polypeptide	tig00004378_pilon 934332..936185 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00004378_pilon:934332..936185+
coding sequence from alignment at tig00004378_pilon:934332..936185+

mRNA sequence

>Gchil3531.t1 ID=Gchil3531.t1|Name=Gchil3531.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=618bp
MMPWTSTTTPRCLDSVMFFVLITGLLQLSLGSAEAGDDPKINSVFDHPLW
CPRRYLSVSTSAPIAEYYRNNDIEAEKMRQVFKFLNRLLGIMDRRRDDPT
SELGCNLHGQSDWVQSLTEAAKKRQFRAAKNEIDKSCPSSVEFSQGETQD
HGKLMSSQDVKEMLEKAVLSMKSAVLASPASPLKEKMVNWTDTVYPLAAW
DLRHISQQCQLQTVSAFRKEGRLFLRVAVTNRPVDDHVLDYDRQYIQEWV
KDDFRDSLRMTHPERIPVNSILDRGGRLERTSTLLEKGHGRAALDSHGIM
LLDDNPAIVKALRQNSVAIDLAEDGIAPSNIAILALPLAGTLIPVAFLAE
LCTSAMVVYIILTDVFSTVPLLTKGVELIGAFNLERRETVAYYVGNKQFG
EIEVWSASCKGEPKFHAIGVLFVVIAVISTLIGMFLEVFAGIVMLRKRRR
EGWDVGGPFGKVAFDTTKLSLLGSGTGGDLLDRRYSIDDDSSRVQSNPEI
GRPYTKPTTKENRWCIWGSKSAPKIVSPMTLMVDDRMARNGACYSIEEKQ
ATVSCEGENMLMGGYKKLYELIGRVKGDEIRDFPAGVGNDGISSAERVAK
KSGSDGYDDELDVENAR*

spliced messenger RNA

>Gchil3531.t1 ID=Gchil3531.t1|Name=Gchil3531.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1854bp|location=Sequence derived from alignment at tig00004378_pilon:934332..936185+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGATGCCCTGGACTTCGACTACTACTCCGCGCTGTTTGGACTCAGTTAT
GTTTTTTGTACTCATCACTGGTCTACTCCAACTCTCCTTAGGATCCGCAG
AGGCCGGTGACGACCCAAAAATAAATTCTGTCTTCGACCATCCCCTCTGG
TGCCCTAGACGTTATCTCTCTGTATCTACATCGGCCCCGATTGCGGAGTA
CTATCGCAATAATGACATAGAAGCTGAAAAGATGAGACAGGTTTTCAAAT
TTCTCAACCGGCTATTGGGCATAATGGACCGCCGTCGCGATGATCCCACC
AGTGAGTTGGGATGCAATTTGCATGGGCAATCAGATTGGGTACAGTCTTT
GACAGAAGCAGCCAAGAAGCGCCAATTTCGTGCAGCAAAGAACGAGATTG
ATAAATCTTGTCCGTCGTCAGTAGAATTTTCTCAGGGTGAGACGCAGGAT
CACGGAAAGCTTATGAGTAGCCAGGACGTGAAGGAAATGCTCGAAAAAGC
TGTGTTATCGATGAAGTCTGCCGTCCTAGCCAGCCCAGCATCACCACTCA
AAGAAAAAATGGTTAATTGGACAGATACTGTTTATCCTCTTGCGGCTTGG
GACCTTAGGCATATTTCCCAACAGTGTCAGTTGCAAACTGTATCTGCTTT
CCGAAAGGAGGGAAGGCTGTTCTTGCGAGTGGCCGTAACAAATCGGCCTG
TAGATGACCACGTCTTAGACTATGACCGCCAATACATCCAGGAGTGGGTC
AAGGACGACTTTCGAGACTCGCTAAGGATGACCCATCCAGAGCGGATTCC
TGTCAATTCCATACTGGACAGGGGGGGCCGTTTGGAGCGGACTTCGACTC
TTTTAGAAAAAGGTCACGGCAGAGCTGCTCTAGACTCGCACGGGATCATG
CTTTTGGACGATAATCCTGCTATAGTCAAAGCGTTGAGGCAGAATTCTGT
CGCTATAGACCTTGCAGAAGATGGCATTGCGCCCAGTAACATTGCCATAC
TTGCCTTACCATTAGCAGGGACTCTAATCCCTGTTGCCTTTTTGGCCGAA
CTATGCACGTCGGCAATGGTTGTGTACATCATTCTCACGGATGTATTTTC
AACGGTACCACTTCTTACCAAGGGCGTAGAGCTCATTGGAGCATTTAACC
TTGAGCGTCGTGAAACGGTTGCGTACTATGTGGGAAATAAACAGTTTGGA
GAGATTGAAGTTTGGAGTGCAAGTTGCAAAGGTGAACCCAAATTCCACGC
AATCGGGGTATTGTTTGTGGTGATCGCTGTCATTTCTACTTTAATTGGTA
TGTTCTTGGAGGTTTTTGCAGGGATTGTGATGCTTCGAAAACGGAGGAGA
GAAGGATGGGATGTCGGAGGACCGTTTGGAAAAGTGGCTTTTGACACCAC
AAAGTTGAGTTTGTTGGGTAGTGGTACTGGCGGGGACCTATTGGATAGAA
GATATTCAATTGATGATGATAGTAGTCGAGTCCAATCCAATCCAGAAATC
GGACGGCCTTATACGAAGCCGACTACCAAAGAGAATAGATGGTGTATATG
GGGTTCGAAGAGTGCTCCCAAGATTGTGTCGCCTATGACGCTAATGGTTG
ATGATAGGATGGCTAGAAATGGAGCCTGCTATTCAATCGAGGAAAAGCAA
GCTACCGTATCTTGTGAGGGTGAAAACATGCTGATGGGCGGTTACAAGAA
GCTATATGAGTTGATAGGTAGGGTGAAAGGTGACGAGATTAGAGACTTCC
CGGCTGGGGTTGGAAATGATGGTATATCGAGCGCTGAGCGAGTTGCGAAG
AAAAGTGGGTCTGACGGATACGACGATGAGTTGGATGTTGAAAATGCCAG
GTGA

protein sequence of Gchil3531.t1

>Gchil3531.t1 ID=Gchil3531.t1|Name=Gchil3531.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=618bp
MMPWTSTTTPRCLDSVMFFVLITGLLQLSLGSAEAGDDPKINSVFDHPLW
CPRRYLSVSTSAPIAEYYRNNDIEAEKMRQVFKFLNRLLGIMDRRRDDPT
SELGCNLHGQSDWVQSLTEAAKKRQFRAAKNEIDKSCPSSVEFSQGETQD
HGKLMSSQDVKEMLEKAVLSMKSAVLASPASPLKEKMVNWTDTVYPLAAW
DLRHISQQCQLQTVSAFRKEGRLFLRVAVTNRPVDDHVLDYDRQYIQEWV
KDDFRDSLRMTHPERIPVNSILDRGGRLERTSTLLEKGHGRAALDSHGIM
LLDDNPAIVKALRQNSVAIDLAEDGIAPSNIAILALPLAGTLIPVAFLAE
LCTSAMVVYIILTDVFSTVPLLTKGVELIGAFNLERRETVAYYVGNKQFG
EIEVWSASCKGEPKFHAIGVLFVVIAVISTLIGMFLEVFAGIVMLRKRRR
EGWDVGGPFGKVAFDTTKLSLLGSGTGGDLLDRRYSIDDDSSRVQSNPEI
GRPYTKPTTKENRWCIWGSKSAPKIVSPMTLMVDDRMARNGACYSIEEKQ
ATVSCEGENMLMGGYKKLYELIGRVKGDEIRDFPAGVGNDGISSAERVAK
KSGSDGYDDELDVENAR*

mRNA from alignment at tig00004378_pilon:934332..936185+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gchil3531.t1 ID=Gchil3531.t1|Name=Gchil3531.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1854bp|location=Sequence derived from alignment at tig00004378_pilon:934332..936185+ (Gracilaria chilensis NLEC103_M9 male)
ATGATGCCCTGGACTTCGACTACTACTCCGCGCTGTTTGGACTCAGTTAT
GTTTTTTGTACTCATCACTGGTCTACTCCAACTCTCCTTAGGATCCGCAG
AGGCCGGTGACGACCCAAAAATAAATTCTGTCTTCGACCATCCCCTCTGG
TGCCCTAGACGTTATCTCTCTGTATCTACATCGGCCCCGATTGCGGAGTA
CTATCGCAATAATGACATAGAAGCTGAAAAGATGAGACAGGTTTTCAAAT
TTCTCAACCGGCTATTGGGCATAATGGACCGCCGTCGCGATGATCCCACC
AGTGAGTTGGGATGCAATTTGCATGGGCAATCAGATTGGGTACAGTCTTT
GACAGAAGCAGCCAAGAAGCGCCAATTTCGTGCAGCAAAGAACGAGATTG
ATAAATCTTGTCCGTCGTCAGTAGAATTTTCTCAGGGTGAGACGCAGGAT
CACGGAAAGCTTATGAGTAGCCAGGACGTGAAGGAAATGCTCGAAAAAGC
TGTGTTATCGATGAAGTCTGCCGTCCTAGCCAGCCCAGCATCACCACTCA
AAGAAAAAATGGTTAATTGGACAGATACTGTTTATCCTCTTGCGGCTTGG
GACCTTAGGCATATTTCCCAACAGTGTCAGTTGCAAACTGTATCTGCTTT
CCGAAAGGAGGGAAGGCTGTTCTTGCGAGTGGCCGTAACAAATCGGCCTG
TAGATGACCACGTCTTAGACTATGACCGCCAATACATCCAGGAGTGGGTC
AAGGACGACTTTCGAGACTCGCTAAGGATGACCCATCCAGAGCGGATTCC
TGTCAATTCCATACTGGACAGGGGGGGCCGTTTGGAGCGGACTTCGACTC
TTTTAGAAAAAGGTCACGGCAGAGCTGCTCTAGACTCGCACGGGATCATG
CTTTTGGACGATAATCCTGCTATAGTCAAAGCGTTGAGGCAGAATTCTGT
CGCTATAGACCTTGCAGAAGATGGCATTGCGCCCAGTAACATTGCCATAC
TTGCCTTACCATTAGCAGGGACTCTAATCCCTGTTGCCTTTTTGGCCGAA
CTATGCACGTCGGCAATGGTTGTGTACATCATTCTCACGGATGTATTTTC
AACGGTACCACTTCTTACCAAGGGCGTAGAGCTCATTGGAGCATTTAACC
TTGAGCGTCGTGAAACGGTTGCGTACTATGTGGGAAATAAACAGTTTGGA
GAGATTGAAGTTTGGAGTGCAAGTTGCAAAGGTGAACCCAAATTCCACGC
AATCGGGGTATTGTTTGTGGTGATCGCTGTCATTTCTACTTTAATTGGTA
TGTTCTTGGAGGTTTTTGCAGGGATTGTGATGCTTCGAAAACGGAGGAGA
GAAGGATGGGATGTCGGAGGACCGTTTGGAAAAGTGGCTTTTGACACCAC
AAAGTTGAGTTTGTTGGGTAGTGGTACTGGCGGGGACCTATTGGATAGAA
GATATTCAATTGATGATGATAGTAGTCGAGTCCAATCCAATCCAGAAATC
GGACGGCCTTATACGAAGCCGACTACCAAAGAGAATAGATGGTGTATATG
GGGTTCGAAGAGTGCTCCCAAGATTGTGTCGCCTATGACGCTAATGGTTG
ATGATAGGATGGCTAGAAATGGAGCCTGCTATTCAATCGAGGAAAAGCAA
GCTACCGTATCTTGTGAGGGTGAAAACATGCTGATGGGCGGTTACAAGAA
GCTATATGAGTTGATAGGTAGGGTGAAAGGTGACGAGATTAGAGACTTCC
CGGCTGGGGTTGGAAATGATGGTATATCGAGCGCTGAGCGAGTTGCGAAG
AAAAGTGGGTCTGACGGATACGACGATGAGTTGGATGTTGAAAATGCCAG
GTGA

Coding sequence (CDS) from alignment at tig00004378_pilon:934332..936185+

>Gchil3531.t1 ID=Gchil3531.t1|Name=Gchil3531.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1854bp|location=Sequence derived from alignment at tig00004378_pilon:934332..936185+ (Gracilaria chilensis NLEC103_M9 male)
ATGATGCCCTGGACTTCGACTACTACTCCGCGCTGTTTGGACTCAGTTAT
GTTTTTTGTACTCATCACTGGTCTACTCCAACTCTCCTTAGGATCCGCAG
AGGCCGGTGACGACCCAAAAATAAATTCTGTCTTCGACCATCCCCTCTGG
TGCCCTAGACGTTATCTCTCTGTATCTACATCGGCCCCGATTGCGGAGTA
CTATCGCAATAATGACATAGAAGCTGAAAAGATGAGACAGGTTTTCAAAT
TTCTCAACCGGCTATTGGGCATAATGGACCGCCGTCGCGATGATCCCACC
AGTGAGTTGGGATGCAATTTGCATGGGCAATCAGATTGGGTACAGTCTTT
GACAGAAGCAGCCAAGAAGCGCCAATTTCGTGCAGCAAAGAACGAGATTG
ATAAATCTTGTCCGTCGTCAGTAGAATTTTCTCAGGGTGAGACGCAGGAT
CACGGAAAGCTTATGAGTAGCCAGGACGTGAAGGAAATGCTCGAAAAAGC
TGTGTTATCGATGAAGTCTGCCGTCCTAGCCAGCCCAGCATCACCACTCA
AAGAAAAAATGGTTAATTGGACAGATACTGTTTATCCTCTTGCGGCTTGG
GACCTTAGGCATATTTCCCAACAGTGTCAGTTGCAAACTGTATCTGCTTT
CCGAAAGGAGGGAAGGCTGTTCTTGCGAGTGGCCGTAACAAATCGGCCTG
TAGATGACCACGTCTTAGACTATGACCGCCAATACATCCAGGAGTGGGTC
AAGGACGACTTTCGAGACTCGCTAAGGATGACCCATCCAGAGCGGATTCC
TGTCAATTCCATACTGGACAGGGGGGGCCGTTTGGAGCGGACTTCGACTC
TTTTAGAAAAAGGTCACGGCAGAGCTGCTCTAGACTCGCACGGGATCATG
CTTTTGGACGATAATCCTGCTATAGTCAAAGCGTTGAGGCAGAATTCTGT
CGCTATAGACCTTGCAGAAGATGGCATTGCGCCCAGTAACATTGCCATAC
TTGCCTTACCATTAGCAGGGACTCTAATCCCTGTTGCCTTTTTGGCCGAA
CTATGCACGTCGGCAATGGTTGTGTACATCATTCTCACGGATGTATTTTC
AACGGTACCACTTCTTACCAAGGGCGTAGAGCTCATTGGAGCATTTAACC
TTGAGCGTCGTGAAACGGTTGCGTACTATGTGGGAAATAAACAGTTTGGA
GAGATTGAAGTTTGGAGTGCAAGTTGCAAAGGTGAACCCAAATTCCACGC
AATCGGGGTATTGTTTGTGGTGATCGCTGTCATTTCTACTTTAATTGGTA
TGTTCTTGGAGGTTTTTGCAGGGATTGTGATGCTTCGAAAACGGAGGAGA
GAAGGATGGGATGTCGGAGGACCGTTTGGAAAAGTGGCTTTTGACACCAC
AAAGTTGAGTTTGTTGGGTAGTGGTACTGGCGGGGACCTATTGGATAGAA
GATATTCAATTGATGATGATAGTAGTCGAGTCCAATCCAATCCAGAAATC
GGACGGCCTTATACGAAGCCGACTACCAAAGAGAATAGATGGTGTATATG
GGGTTCGAAGAGTGCTCCCAAGATTGTGTCGCCTATGACGCTAATGGTTG
ATGATAGGATGGCTAGAAATGGAGCCTGCTATTCAATCGAGGAAAAGCAA
GCTACCGTATCTTGTGAGGGTGAAAACATGCTGATGGGCGGTTACAAGAA
GCTATATGAGTTGATAGGTAGGGTGAAAGGTGACGAGATTAGAGACTTCC
CGGCTGGGGTTGGAAATGATGGTATATCGAGCGCTGAGCGAGTTGCGAAG
AAAAGTGGGTCTGACGGATACGACGATGAGTTGGATGTTGAAAATGCCAG
GTGA