Gchil3526.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gchil3526.t1
Unique Name	Gchil3526.t1
Type	mRNA
Organism	Gracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length	437

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00004378_pilon	contig	tig00004378_pilon:921091..922401 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria chilensis NLEC103_M9 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	57918.XP_004294505.1
PFAMs	Smg4_UPF3
Max annot lvl	35493\|Streptophyta
KEGG ko	ko:K14328
KEGG Pathway	ko03013,ko03015,map03013,map03015
KEGG Module	M00430
GOs	GO:0000184,GO:0000956,GO:0001101,GO:0003674,GO:0003676,GO:0003723,GO:0003729,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005730,GO:0006139,GO:0006401,GO:0006402,GO:0006725,GO:0006807,GO:0006950,GO:0006952,GO:0007154,GO:0007165,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009314,GO:0009416,GO:0009605,GO:0009607,GO:0009611,GO:0009617,GO:0009628,GO:0009648,GO:0009719,GO:0009725,GO:0009751,GO:0009753,GO:0009755,GO:0009863,GO:0009867,GO:0009892,GO:0009987,GO:0010033,GO:0010468,GO:0010605,GO:0010629,GO:0014070,GO:0016070,GO:0016071,GO:0019222,GO:0019439,GO:0023052,GO:0031974,GO:0031981,GO:0032870,GO:0034641,GO:0034655,GO:0035690,GO:0042221,GO:0042493,GO:0042742,GO:0043170,GO:0043207,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044237,GO:0044238,GO:0044248,GO:0044260,GO:0044265,GO:0044270,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044464,GO:0046483,GO:0046677,GO:0046700,GO:0048519,GO:0048571,GO:0050789,GO:0050794,GO:0050896,GO:0051704,GO:0051707,GO:0051716,GO:0060255,GO:0065007,GO:0070013,GO:0070887,GO:0071229,GO:0071236,GO:0071310,GO:0071395,GO:0071407,GO:0071446,GO:0071495,GO:0071704,GO:0090304,GO:0097159,GO:0098542,GO:1901360,GO:1901361,GO:1901363,GO:1901575,GO:1901700,GO:1901701
Evalue	1.55e-10
EggNOG OGs	KOG1295@1\|root,KOG1295@2759\|Eukaryota,37PIS@33090\|Viridiplantae,3GCQK@35493\|Streptophyta,4JM8S@91835\|fabids
Description	Regulator of nonsense transcripts
COG category	A
BRITE	ko00000,ko00001,ko00002,ko03019

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gchil3526	Gchil3526	Gracilaria chilensis NLEC103_M9 male	gene	tig00004378_pilon 921091..922401 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil3526.t1.start1	Gchil3526.t1.start1	Gracilaria chilensis NLEC103_M9 male	start_codon	tig00004378_pilon 921091..921093 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil3526.t1.CDS1	Gchil3526.t1.CDS1	Gracilaria chilensis NLEC103_M9 male	CDS	tig00004378_pilon 921091..922401 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil3526.t1.exon1	Gchil3526.t1.exon1	Gracilaria chilensis NLEC103_M9 male	exon	tig00004378_pilon 921091..922401 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil3526.t1.stop1	Gchil3526.t1.stop1	Gracilaria chilensis NLEC103_M9 male	stop_codon	tig00004378_pilon 922399..922401 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil3526.t1	Gchil3526.t1	Gracilaria chilensis NLEC103_M9 male	polypeptide	tig00004378_pilon 921091..922401 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00004378_pilon:921091..922401+
coding sequence from alignment at tig00004378_pilon:921091..922401+

mRNA sequence

>Gchil3526.t1 ID=Gchil3526.t1|Name=Gchil3526.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=437bp
MDRAPARRGRVAGDRPGSSRPPPTGGRPRRRPPRPPPPQQASARPRPRPR
PKNRARKRPPAPTIAVKLIVRRLPPTLSAEEFSSHADPNGAEKAIWTAYY
PGKVEAVGAVKRSAQVVRHSVAYLAFEKLEDATRFFQQFDAFKFVDNTKT
VDSSLQSGTDYYARVERTVYQSTPPISRRRPPSPLESTIESDPDYIKFLA
ELKGDAEREQSELTATLASAPTLIARPTSSESDNSASKGKVITPLMEDVR
ARRRERDERKKIKSSARGARSKNRGSAPPTPTPLLANKTNNSTESVKLGA
RRKKRRGGENANTSKRDESVHGRNSPKSSSNDRRNGQLRPAENNVATSAP
PNSVTSSPYANSAASMNSASNGKGGSNRGAPGSRARYPRGQKGRARYGQN
GNGTVNVTGRNEHQGADALHGPVRVLRKEASVTNKT*

spliced messenger RNA

>Gchil3526.t1 ID=Gchil3526.t1|Name=Gchil3526.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1311bp|location=Sequence derived from alignment at tig00004378_pilon:921091..922401+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGATCGAGCTCCCGCGCGGCGAGGCCGTGTCGCGGGGGACCGGCCTGG
CTCGTCTCGCCCGCCGCCCACCGGCGGGCGACCGCGCCGTCGTCCTCCCC
GTCCGCCTCCCCCACAGCAAGCCTCTGCGCGCCCGCGCCCGCGCCCACGC
CCAAAGAATAGAGCACGAAAGAGACCACCGGCGCCCACCATTGCTGTCAA
GCTAATTGTTCGACGATTGCCGCCCACGCTTTCGGCCGAGGAATTTAGCT
CGCATGCTGACCCCAATGGCGCCGAGAAGGCAATTTGGACCGCATATTAT
CCTGGCAAGGTTGAGGCCGTCGGCGCTGTCAAGCGCTCAGCCCAAGTTGT
CAGGCATTCCGTTGCGTACTTGGCATTCGAAAAGCTCGAGGATGCCACCC
GTTTCTTTCAACAATTCGATGCCTTCAAGTTCGTTGACAACACGAAAACC
GTTGATAGCTCTTTACAATCTGGAACTGATTATTACGCTCGCGTGGAACG
CACGGTGTATCAGTCCACTCCTCCTATATCCAGACGTCGACCGCCTTCCC
CACTAGAAAGTACCATTGAGAGCGATCCGGACTATATCAAGTTCTTAGCC
GAGCTGAAGGGCGATGCTGAGCGCGAGCAAAGCGAACTGACAGCAACCCT
CGCATccgctcccactctcatcgcacgtcccacttccaGCGAGAGTGATA
ACAGTGCCTCGAAAGGAAAGGTTATCACCCCTCTCATGGAAGACGTGCGT
GCGCGTCGACGCGAACGAGACGAGAGAAAGAAGATAAAATCCTCAGCTCG
AGGCGCCCGCAGCAAGAATCGTGGTAGTGCTCCTCCAACACCAACACCAC
TACTCGCAAACAAAACAAACAACTCTACAGAGTCTGTCAAACTTGGCGCT
CGTCGAAAGAAACGTCGTGGTGGTGAAAATGCGAACACTTCAAAACGCGA
CGAATCTGTGCACGGCAGGAATTCACCAAAGTCTTCTTCTAATGACCGAC
GAAACGGCCAGTTGCGTCCCGCTGAAAACAACGTTGCTACTTCCGCACCC
CCGAACTCTGTGACCTCTTCCCCTTACGCGAACAGTGCTGCTTCAATGAA
TAGTGCATCAAATGGAAAAGGAGGGTCTAACAGAGGTGCTCCAGGAAGTC
GTGCACGCTACCCACGCGGACAGAAAGGCCGTGCTCGGTATGGCCAGAAT
GGAAACGGCACCGTCAATGTTACTGGCAGGAACGAACATCAAGGCGCTGA
TGCACTTCATGGGCCTGTGCGGGTGCTAAGGAAAGAGGCTAGTGTGACGA
ACAAGACGTAA

protein sequence of Gchil3526.t1

>Gchil3526.t1 ID=Gchil3526.t1|Name=Gchil3526.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=437bp
MDRAPARRGRVAGDRPGSSRPPPTGGRPRRRPPRPPPPQQASARPRPRPR
PKNRARKRPPAPTIAVKLIVRRLPPTLSAEEFSSHADPNGAEKAIWTAYY
PGKVEAVGAVKRSAQVVRHSVAYLAFEKLEDATRFFQQFDAFKFVDNTKT
VDSSLQSGTDYYARVERTVYQSTPPISRRRPPSPLESTIESDPDYIKFLA
ELKGDAEREQSELTATLASAPTLIARPTSSESDNSASKGKVITPLMEDVR
ARRRERDERKKIKSSARGARSKNRGSAPPTPTPLLANKTNNSTESVKLGA
RRKKRRGGENANTSKRDESVHGRNSPKSSSNDRRNGQLRPAENNVATSAP
PNSVTSSPYANSAASMNSASNGKGGSNRGAPGSRARYPRGQKGRARYGQN
GNGTVNVTGRNEHQGADALHGPVRVLRKEASVTNKT*

mRNA from alignment at tig00004378_pilon:921091..922401+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gchil3526.t1 ID=Gchil3526.t1|Name=Gchil3526.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1311bp|location=Sequence derived from alignment at tig00004378_pilon:921091..922401+ (Gracilaria chilensis NLEC103_M9 male)
ATGGATCGAGCTCCCGCGCGGCGAGGCCGTGTCGCGGGGGACCGGCCTGG
CTCGTCTCGCCCGCCGCCCACCGGCGGGCGACCGCGCCGTCGTCCTCCCC
GTCCGCCTCCCCCACAGCAAGCCTCTGCGCGCCCGCGCCCGCGCCCACGC
CCAAAGAATAGAGCACGAAAGAGACCACCGGCGCCCACCATTGCTGTCAA
GCTAATTGTTCGACGATTGCCGCCCACGCTTTCGGCCGAGGAATTTAGCT
CGCATGCTGACCCCAATGGCGCCGAGAAGGCAATTTGGACCGCATATTAT
CCTGGCAAGGTTGAGGCCGTCGGCGCTGTCAAGCGCTCAGCCCAAGTTGT
CAGGCATTCCGTTGCGTACTTGGCATTCGAAAAGCTCGAGGATGCCACCC
GTTTCTTTCAACAATTCGATGCCTTCAAGTTCGTTGACAACACGAAAACC
GTTGATAGCTCTTTACAATCTGGAACTGATTATTACGCTCGCGTGGAACG
CACGGTGTATCAGTCCACTCCTCCTATATCCAGACGTCGACCGCCTTCCC
CACTAGAAAGTACCATTGAGAGCGATCCGGACTATATCAAGTTCTTAGCC
GAGCTGAAGGGCGATGCTGAGCGCGAGCAAAGCGAACTGACAGCAACCCT
CGCATccgctcccactctcatcgcacgtcccacttccaGCGAGAGTGATA
ACAGTGCCTCGAAAGGAAAGGTTATCACCCCTCTCATGGAAGACGTGCGT
GCGCGTCGACGCGAACGAGACGAGAGAAAGAAGATAAAATCCTCAGCTCG
AGGCGCCCGCAGCAAGAATCGTGGTAGTGCTCCTCCAACACCAACACCAC
TACTCGCAAACAAAACAAACAACTCTACAGAGTCTGTCAAACTTGGCGCT
CGTCGAAAGAAACGTCGTGGTGGTGAAAATGCGAACACTTCAAAACGCGA
CGAATCTGTGCACGGCAGGAATTCACCAAAGTCTTCTTCTAATGACCGAC
GAAACGGCCAGTTGCGTCCCGCTGAAAACAACGTTGCTACTTCCGCACCC
CCGAACTCTGTGACCTCTTCCCCTTACGCGAACAGTGCTGCTTCAATGAA
TAGTGCATCAAATGGAAAAGGAGGGTCTAACAGAGGTGCTCCAGGAAGTC
GTGCACGCTACCCACGCGGACAGAAAGGCCGTGCTCGGTATGGCCAGAAT
GGAAACGGCACCGTCAATGTTACTGGCAGGAACGAACATCAAGGCGCTGA
TGCACTTCATGGGCCTGTGCGGGTGCTAAGGAAAGAGGCTAGTGTGACGA
ACAAGACGTAA

Coding sequence (CDS) from alignment at tig00004378_pilon:921091..922401+

>Gchil3526.t1 ID=Gchil3526.t1|Name=Gchil3526.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1311bp|location=Sequence derived from alignment at tig00004378_pilon:921091..922401+ (Gracilaria chilensis NLEC103_M9 male)
ATGGATCGAGCTCCCGCGCGGCGAGGCCGTGTCGCGGGGGACCGGCCTGG
CTCGTCTCGCCCGCCGCCCACCGGCGGGCGACCGCGCCGTCGTCCTCCCC
GTCCGCCTCCCCCACAGCAAGCCTCTGCGCGCCCGCGCCCGCGCCCACGC
CCAAAGAATAGAGCACGAAAGAGACCACCGGCGCCCACCATTGCTGTCAA
GCTAATTGTTCGACGATTGCCGCCCACGCTTTCGGCCGAGGAATTTAGCT
CGCATGCTGACCCCAATGGCGCCGAGAAGGCAATTTGGACCGCATATTAT
CCTGGCAAGGTTGAGGCCGTCGGCGCTGTCAAGCGCTCAGCCCAAGTTGT
CAGGCATTCCGTTGCGTACTTGGCATTCGAAAAGCTCGAGGATGCCACCC
GTTTCTTTCAACAATTCGATGCCTTCAAGTTCGTTGACAACACGAAAACC
GTTGATAGCTCTTTACAATCTGGAACTGATTATTACGCTCGCGTGGAACG
CACGGTGTATCAGTCCACTCCTCCTATATCCAGACGTCGACCGCCTTCCC
CACTAGAAAGTACCATTGAGAGCGATCCGGACTATATCAAGTTCTTAGCC
GAGCTGAAGGGCGATGCTGAGCGCGAGCAAAGCGAACTGACAGCAACCCT
CGCATccgctcccactctcatcgcacgtcccacttccaGCGAGAGTGATA
ACAGTGCCTCGAAAGGAAAGGTTATCACCCCTCTCATGGAAGACGTGCGT
GCGCGTCGACGCGAACGAGACGAGAGAAAGAAGATAAAATCCTCAGCTCG
AGGCGCCCGCAGCAAGAATCGTGGTAGTGCTCCTCCAACACCAACACCAC
TACTCGCAAACAAAACAAACAACTCTACAGAGTCTGTCAAACTTGGCGCT
CGTCGAAAGAAACGTCGTGGTGGTGAAAATGCGAACACTTCAAAACGCGA
CGAATCTGTGCACGGCAGGAATTCACCAAAGTCTTCTTCTAATGACCGAC
GAAACGGCCAGTTGCGTCCCGCTGAAAACAACGTTGCTACTTCCGCACCC
CCGAACTCTGTGACCTCTTCCCCTTACGCGAACAGTGCTGCTTCAATGAA
TAGTGCATCAAATGGAAAAGGAGGGTCTAACAGAGGTGCTCCAGGAAGTC
GTGCACGCTACCCACGCGGACAGAAAGGCCGTGCTCGGTATGGCCAGAAT
GGAAACGGCACCGTCAATGTTACTGGCAGGAACGAACATCAAGGCGCTGA
TGCACTTCATGGGCCTGTGCGGGTGCTAAGGAAAGAGGCTAGTGTGACGA
ACAAGACGTAA