Gchil3523.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil3523.t1
Unique NameGchil3523.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length274
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004378_piloncontigtig00004378_pilon:916733..917616 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog3847.GLYMA15G12230.1
PFAMsInositol_P
Max annot lvl35493|Streptophyta
KEGG rclassRC00078
KEGG koko:K10047,ko:K13104
KEGG ReactionR01185,R01186,R01187,R07674
KEGG Pathwayko00053,ko00562,ko01100,ko01110,ko04070,map00053,map00562,map01100,map01110,map04070
KEGG ModuleM00114,M00131
GOsGO:0000287,GO:0003674,GO:0003824,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005886,GO:0005975,GO:0005996,GO:0006020,GO:0006021,GO:0006066,GO:0006082,GO:0006732,GO:0006766,GO:0006767,GO:0006793,GO:0006796,GO:0006950,GO:0007154,GO:0007165,GO:0008150,GO:0008152,GO:0008934,GO:0009056,GO:0009058,GO:0009108,GO:0009110,GO:0009266,GO:0009409,GO:0009628,GO:0009987,GO:0010347,GO:0016020,GO:0016051,GO:0016053,GO:0016311,GO:0016787,GO:0016788,GO:0016791,GO:0019203,GO:0019637,GO:0019751,GO:0019752,GO:0019852,GO:0019853,GO:0023052,GO:0034637,GO:0042364,GO:0042578,GO:0043167,GO:0043169,GO:0043436,GO:0043647,GO:0044237,GO:0044238,GO:0044249,GO:0044262,GO:0044281,GO:0044282,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046164,GO:0046165,GO:0046173,GO:0046174,GO:0046364,GO:0046394,GO:0046434,GO:0046838,GO:0046855,GO:0046872,GO:0050308,GO:0050789,GO:0050794,GO:0050896,GO:0051186,GO:0051188,GO:0051716,GO:0052745,GO:0052834,GO:0065007,GO:0070456,GO:0071545,GO:0071704,GO:0071944,GO:0080167,GO:1901575,GO:1901576,GO:1901615,GO:1901616,GO:1901617
Evalue1.22e-68
EggNOG OGsCOG0483@1|root,KOG2951@2759|Eukaryota,37M8T@33090|Viridiplantae,3GEX0@35493|Streptophyta,4JDDM@91835|fabids
EC3.1.3.25,3.1.3.93
DescriptionInositol-1-monophosphatase
COG categoryG
BRITEko00000,ko00001,ko00002,ko01000,ko03041
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil3523Gchil3523Gracilaria chilensis NLEC103_M9 malegenetig00004378_pilon 916733..917616 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3523.t1Gchil3523.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004378_pilon 916733..917616 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3523.t1.start1Gchil3523.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004378_pilon 916733..916735 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3523.t1.CDS1Gchil3523.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004378_pilon 916733..917036 +
Gchil3523.t1.CDS2Gchil3523.t1.CDS2Gracilaria chilensis NLEC103_M9 maleCDStig00004378_pilon 917099..917616 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3523.t1.exon1Gchil3523.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004378_pilon 916733..917036 +
Gchil3523.t1.exon2Gchil3523.t1.exon2Gracilaria chilensis NLEC103_M9 maleexontig00004378_pilon 917099..917616 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3523.t1.intron1Gchil3523.t1.intron1Gracilaria chilensis NLEC103_M9 maleintrontig00004378_pilon 917037..917098 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3523.t1.stop1Gchil3523.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004378_pilon 917614..917616 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil3523.t1 ID=Gchil3523.t1|Name=Gchil3523.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=274bp
MSDVDITAEGTQRLLAFATDVARQAGTIIKAAFDQPCHHNYGRKSQTDPV
TETDHAVEAFIFGKIRARFNQHCFIGEESASDTEWTDEPTWIVDPIDGTA
NFVHRIPMCAVSIAFTLNKQYIIGVIYNPLLNELFSATHHTSATLNNRPI
KVSTVSKLSSACISTEAGSDRSKEKTNWILQNLSVMLKNNAQCVRMLGSC
ALNMANLACGRIDLLYERGPWPWDMAAGVLIIRQAGGVVLSGDLASASDF
ELTGRCILAFTPCLKPELFDKLL*
back to top

spliced messenger RNA

>Gchil3523.t1 ID=Gchil3523.t1|Name=Gchil3523.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=822bp|location=Sequence derived from alignment at tig00004378_pilon:916733..917616+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAGCGACGTCGATATTACCGCCGAGGGCACGCAGCGGCTGCTTGCCTT
TGCCACGGACGTTGCGCGACAAGCTGGCACAATCATCAAGGCCGCCTTCG
ATCAGCCGTGCCATCACAATTACGGCCGCAAGTCACAGACCGATCCCGTT
ACCGAAACCGACCACGCTGTCGAGGCGTTTATCTTCGGAAAGATTCGCGC
CCGATTCAACCAACACTGCTTCATTGGCGAGGAAAGTGCCAGCGACACGG
AATGGACCGATGAGCCTACTTGGATCGTAGATCCTATTGACGGCACTGCG
AACTTCGTACATCGCATCCCGATGTGTGCCGTCAGCATAGCGTTCACGCT
CAACAAACAGTACATAATCGGGGTAATTTACAATCCGCTGCTGAACGAAC
TGTTCAGCGCCACGCATCACACATCCGCAACCCTGAACAACCGCCCAATT
AAAGTGTCTACCGTATCCAAACTGTCCTCCGCCTGCATCTCAACTGAAGC
GGGGTCGGACCGCTCCAAAGAAAAGACCAACTGGATCCTTCAAAACCTCT
CAGTGATGCTAAAAAACAACGCGCAGTGCGTTAGAATGCTCGGATCATGC
GCATTAAACATGGCCAACCTGGCGTGCGGTCGCATCGATCTCCTGTACGA
ACGCGGGCCGTGGCCGTGGGACATGGCAGCCGGCGTGCTCATCATCCGTC
AAGCTGGTGGAGTTGTGCTCAGCGGCGACCTCGCCTCTGCGTCAGACTTT
GAACTAACGGGGCGCTGTATTCTCGCCTTCACGCCTTGCCTCAAACCGGA
ACTTTTTGATAAACTTTTGTAA
back to top

protein sequence of Gchil3523.t1

>Gchil3523.t1 ID=Gchil3523.t1|Name=Gchil3523.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=274bp
MSDVDITAEGTQRLLAFATDVARQAGTIIKAAFDQPCHHNYGRKSQTDPV
TETDHAVEAFIFGKIRARFNQHCFIGEESASDTEWTDEPTWIVDPIDGTA
NFVHRIPMCAVSIAFTLNKQYIIGVIYNPLLNELFSATHHTSATLNNRPI
KVSTVSKLSSACISTEAGSDRSKEKTNWILQNLSVMLKNNAQCVRMLGSC
ALNMANLACGRIDLLYERGPWPWDMAAGVLIIRQAGGVVLSGDLASASDF
ELTGRCILAFTPCLKPELFDKLL*
back to top

mRNA from alignment at tig00004378_pilon:916733..917616+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil3523.t1 ID=Gchil3523.t1|Name=Gchil3523.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=884bp|location=Sequence derived from alignment at tig00004378_pilon:916733..917616+ (Gracilaria chilensis NLEC103_M9 male)
ATGAGCGACGTCGATATTACCGCCGAGGGCACGCAGCGGCTGCTTGCCTT
TGCCACGGACGTTGCGCGACAAGCTGGCACAATCATCAAGGCCGCCTTCG
ATCAGCCGTGCCATCACAATTACGGCCGCAAGTCACAGACCGATCCCGTT
ACCGAAACCGACCACGCTGTCGAGGCGTTTATCTTCGGAAAGATTCGCGC
CCGATTCAACCAACACTGCTTCATTGGCGAGGAAAGTGCCAGCGACACGG
AATGGACCGATGAGCCTACTTGGATCGTAGATCCTATTGACGGCACTGCG
AACTGTAAGTGAAGCATCCCTGCCTCTCGACTAGCAGATTTGGCTCACTA
ACCAACCGCACCACAGTCGTACATCGCATCCCGATGTGTGCCGTCAGCAT
AGCGTTCACGCTCAACAAACAGTACATAATCGGGGTAATTTACAATCCGC
TGCTGAACGAACTGTTCAGCGCCACGCATCACACATCCGCAACCCTGAAC
AACCGCCCAATTAAAGTGTCTACCGTATCCAAACTGTCCTCCGCCTGCAT
CTCAACTGAAGCGGGGTCGGACCGCTCCAAAGAAAAGACCAACTGGATCC
TTCAAAACCTCTCAGTGATGCTAAAAAACAACGCGCAGTGCGTTAGAATG
CTCGGATCATGCGCATTAAACATGGCCAACCTGGCGTGCGGTCGCATCGA
TCTCCTGTACGAACGCGGGCCGTGGCCGTGGGACATGGCAGCCGGCGTGC
TCATCATCCGTCAAGCTGGTGGAGTTGTGCTCAGCGGCGACCTCGCCTCT
GCGTCAGACTTTGAACTAACGGGGCGCTGTATTCTCGCCTTCACGCCTTG
CCTCAAACCGGAACTTTTTGATAAACTTTTGTAA
back to top

Coding sequence (CDS) from alignment at tig00004378_pilon:916733..917616+

>Gchil3523.t1 ID=Gchil3523.t1|Name=Gchil3523.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=822bp|location=Sequence derived from alignment at tig00004378_pilon:916733..917616+ (Gracilaria chilensis NLEC103_M9 male)
ATGAGCGACGTCGATATTACCGCCGAGGGCACGCAGCGGCTGCTTGCCTT
TGCCACGGACGTTGCGCGACAAGCTGGCACAATCATCAAGGCCGCCTTCG
ATCAGCCGTGCCATCACAATTACGGCCGCAAGTCACAGACCGATCCCGTT
ACCGAAACCGACCACGCTGTCGAGGCGTTTATCTTCGGAAAGATTCGCGC
CCGATTCAACCAACACTGCTTCATTGGCGAGGAAAGTGCCAGCGACACGG
AATGGACCGATGAGCCTACTTGGATCGTAGATCCTATTGACGGCACTGCG
AACTTCGTACATCGCATCCCGATGTGTGCCGTCAGCATAGCGTTCACGCT
CAACAAACAGTACATAATCGGGGTAATTTACAATCCGCTGCTGAACGAAC
TGTTCAGCGCCACGCATCACACATCCGCAACCCTGAACAACCGCCCAATT
AAAGTGTCTACCGTATCCAAACTGTCCTCCGCCTGCATCTCAACTGAAGC
GGGGTCGGACCGCTCCAAAGAAAAGACCAACTGGATCCTTCAAAACCTCT
CAGTGATGCTAAAAAACAACGCGCAGTGCGTTAGAATGCTCGGATCATGC
GCATTAAACATGGCCAACCTGGCGTGCGGTCGCATCGATCTCCTGTACGA
ACGCGGGCCGTGGCCGTGGGACATGGCAGCCGGCGTGCTCATCATCCGTC
AAGCTGGTGGAGTTGTGCTCAGCGGCGACCTCGCCTCTGCGTCAGACTTT
GAACTAACGGGGCGCTGTATTCTCGCCTTCACGCCTTGCCTCAAACCGGA
ACTTTTTGATAAACTTTTGTAA
back to top