Gchil3520.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gchil3520.t1
Unique Name	Gchil3520.t1
Type	mRNA
Organism	Gracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length	307

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00004378_pilon	contig	tig00004378_pilon:887757..888677 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria chilensis NLEC103_M9 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	104355.XP_007861440.1
PFAMs	Brr6_like_C_C
Max annot lvl	4751\|Fungi
Evalue	8.45e-06
EggNOG OGs	COG5085@1\|root,KOG4503@2759\|Eukaryota,39VFP@33154\|Opisthokonta,3P574@4751\|Fungi,3V1UX@5204\|Basidiomycota,22620@155619\|Agaricomycetes,3H1U3@355688\|Agaricomycetes incertae sedis
Description	Di-sulfide bridge nucleocytoplasmic transport domain
COG category	S

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gchil3520	Gchil3520	Gracilaria chilensis NLEC103_M9 male	gene	tig00004378_pilon 887757..888677 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil3520.t1.start1	Gchil3520.t1.start1	Gracilaria chilensis NLEC103_M9 male	start_codon	tig00004378_pilon 887757..887759 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil3520.t1.CDS1	Gchil3520.t1.CDS1	Gracilaria chilensis NLEC103_M9 male	CDS	tig00004378_pilon 887757..888677 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil3520.t1.exon1	Gchil3520.t1.exon1	Gracilaria chilensis NLEC103_M9 male	exon	tig00004378_pilon 887757..888677 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil3520.t1.stop1	Gchil3520.t1.stop1	Gracilaria chilensis NLEC103_M9 male	stop_codon	tig00004378_pilon 888675..888677 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil3520.t1	Gchil3520.t1	Gracilaria chilensis NLEC103_M9 male	polypeptide	tig00004378_pilon 887757..888677 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00004378_pilon:887757..888677+
coding sequence from alignment at tig00004378_pilon:887757..888677+

mRNA sequence

>Gchil3520.t1 ID=Gchil3520.t1|Name=Gchil3520.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=307bp
MTRRLRASSPTPSSSTIHIDLTAPAASSSSSSATTSETSAPSPCLRPRRH
HHHHHHHPQHVHQRPPRAEALTVSSPPSDRRFTAAYRRVHTRRDRVYTQN
GLFERVCHTDERPALAPFTLWLSNLLVAVAVLAAAALLLHLAHALYCDIM
RKTTSRAHQLEREASQCHLHFRTNQCESASSPALSRLCLEWRQCVSRGRS
AFRHAFSLTVFAEIAADMFNTFGATVTSKGVIVALVFFALLLCFGSVLFR
LFASPRRPPPLSPLFQEQYWSRPVQSLPSPPPEKRTPLVAWSADKTAKHH
ATQKQL*

spliced messenger RNA

>Gchil3520.t1 ID=Gchil3520.t1|Name=Gchil3520.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=921bp|location=Sequence derived from alignment at tig00004378_pilon:887757..888677+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGACGCGTCGCCTGCGCGCCTCGTCGCCGACGCCGTCGTCTAGTACCAT
CCACATCGACCTCACCGCCCCTGCCGcttcttcttcttcttcttcCGCCA
CTACGTCCGAAACTTCAGCGCCGTCGCCGTGTCTGCGTCCccgccgccac
catcaccaccaccaccaccacccacaacacGTGCATCAACGTCCCCCCCG
CGCCGAAGCGCTCACCGTTTCGTCTCCCCCGTCAGACCGCCGTTTCACAG
CGGCGTACCGTCGGGTGCATACGCGACGCGACCGCGTCTACACGCAGAAC
GGCCTGTTTGAACGCGTATGCCACACTGACGAGCGTCCCGCGCTTGCGCC
TTTCACGTTGTGGCTGTCCAACTTGCTCGTGGCTGTCGCTGTTCTTGCCG
CCGCTGCGCTGCTTTTGCACCTGGCTCATGCCTTGTACTGCGACATCATG
AGGAAGACTACCTCACGCGCACACCAATTGGAGAGAGAAGCCTCGCAATG
TCACCTGCACTTTCGCACCAACCAATGTGAAAGCGCGTCCTCGCCTGCGC
TGTCGCGTCTCTGTCTGGAGTGGCGCCAGTGTGTCTCGCGCGGCCGCTCT
GCCTTTCGGCACGCGTTTTCCCTAACTGTGTTTGCGGAGATTGCCGCCGA
CATGTTCAACACTTTTGGCGCCACTGTCACGTCAAAGGGCGTCATCGTGG
CCTTGGTTTTCTTTGCGCTTTTGCTTTGTTTCGGTTCTGTTTTATTTCGT
CTGTTTGCTTCACCGAGACGACCCCCGCCGCTGTCCCCGCTCTTTCAAGA
GCAGTATTGGTCCCGTCCGGTGCAGTCGCTGCCGTCGCCACCGCCGGAGA
AGCGCACACCGCTCGTCGCGTGGAGTGCCGACAAGACTGCAAAGCACCAC
GCTACACAGAAGCAACTGTGA

protein sequence of Gchil3520.t1

>Gchil3520.t1 ID=Gchil3520.t1|Name=Gchil3520.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=307bp
MTRRLRASSPTPSSSTIHIDLTAPAASSSSSSATTSETSAPSPCLRPRRH
HHHHHHHPQHVHQRPPRAEALTVSSPPSDRRFTAAYRRVHTRRDRVYTQN
GLFERVCHTDERPALAPFTLWLSNLLVAVAVLAAAALLLHLAHALYCDIM
RKTTSRAHQLEREASQCHLHFRTNQCESASSPALSRLCLEWRQCVSRGRS
AFRHAFSLTVFAEIAADMFNTFGATVTSKGVIVALVFFALLLCFGSVLFR
LFASPRRPPPLSPLFQEQYWSRPVQSLPSPPPEKRTPLVAWSADKTAKHH
ATQKQL*

mRNA from alignment at tig00004378_pilon:887757..888677+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gchil3520.t1 ID=Gchil3520.t1|Name=Gchil3520.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=921bp|location=Sequence derived from alignment at tig00004378_pilon:887757..888677+ (Gracilaria chilensis NLEC103_M9 male)
ATGACGCGTCGCCTGCGCGCCTCGTCGCCGACGCCGTCGTCTAGTACCAT
CCACATCGACCTCACCGCCCCTGCCGcttcttcttcttcttcttcCGCCA
CTACGTCCGAAACTTCAGCGCCGTCGCCGTGTCTGCGTCCccgccgccac
catcaccaccaccaccaccacccacaacacGTGCATCAACGTCCCCCCCG
CGCCGAAGCGCTCACCGTTTCGTCTCCCCCGTCAGACCGCCGTTTCACAG
CGGCGTACCGTCGGGTGCATACGCGACGCGACCGCGTCTACACGCAGAAC
GGCCTGTTTGAACGCGTATGCCACACTGACGAGCGTCCCGCGCTTGCGCC
TTTCACGTTGTGGCTGTCCAACTTGCTCGTGGCTGTCGCTGTTCTTGCCG
CCGCTGCGCTGCTTTTGCACCTGGCTCATGCCTTGTACTGCGACATCATG
AGGAAGACTACCTCACGCGCACACCAATTGGAGAGAGAAGCCTCGCAATG
TCACCTGCACTTTCGCACCAACCAATGTGAAAGCGCGTCCTCGCCTGCGC
TGTCGCGTCTCTGTCTGGAGTGGCGCCAGTGTGTCTCGCGCGGCCGCTCT
GCCTTTCGGCACGCGTTTTCCCTAACTGTGTTTGCGGAGATTGCCGCCGA
CATGTTCAACACTTTTGGCGCCACTGTCACGTCAAAGGGCGTCATCGTGG
CCTTGGTTTTCTTTGCGCTTTTGCTTTGTTTCGGTTCTGTTTTATTTCGT
CTGTTTGCTTCACCGAGACGACCCCCGCCGCTGTCCCCGCTCTTTCAAGA
GCAGTATTGGTCCCGTCCGGTGCAGTCGCTGCCGTCGCCACCGCCGGAGA
AGCGCACACCGCTCGTCGCGTGGAGTGCCGACAAGACTGCAAAGCACCAC
GCTACACAGAAGCAACTGTGA

Coding sequence (CDS) from alignment at tig00004378_pilon:887757..888677+

>Gchil3520.t1 ID=Gchil3520.t1|Name=Gchil3520.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=921bp|location=Sequence derived from alignment at tig00004378_pilon:887757..888677+ (Gracilaria chilensis NLEC103_M9 male)
ATGACGCGTCGCCTGCGCGCCTCGTCGCCGACGCCGTCGTCTAGTACCAT
CCACATCGACCTCACCGCCCCTGCCGcttcttcttcttcttcttcCGCCA
CTACGTCCGAAACTTCAGCGCCGTCGCCGTGTCTGCGTCCccgccgccac
catcaccaccaccaccaccacccacaacacGTGCATCAACGTCCCCCCCG
CGCCGAAGCGCTCACCGTTTCGTCTCCCCCGTCAGACCGCCGTTTCACAG
CGGCGTACCGTCGGGTGCATACGCGACGCGACCGCGTCTACACGCAGAAC
GGCCTGTTTGAACGCGTATGCCACACTGACGAGCGTCCCGCGCTTGCGCC
TTTCACGTTGTGGCTGTCCAACTTGCTCGTGGCTGTCGCTGTTCTTGCCG
CCGCTGCGCTGCTTTTGCACCTGGCTCATGCCTTGTACTGCGACATCATG
AGGAAGACTACCTCACGCGCACACCAATTGGAGAGAGAAGCCTCGCAATG
TCACCTGCACTTTCGCACCAACCAATGTGAAAGCGCGTCCTCGCCTGCGC
TGTCGCGTCTCTGTCTGGAGTGGCGCCAGTGTGTCTCGCGCGGCCGCTCT
GCCTTTCGGCACGCGTTTTCCCTAACTGTGTTTGCGGAGATTGCCGCCGA
CATGTTCAACACTTTTGGCGCCACTGTCACGTCAAAGGGCGTCATCGTGG
CCTTGGTTTTCTTTGCGCTTTTGCTTTGTTTCGGTTCTGTTTTATTTCGT
CTGTTTGCTTCACCGAGACGACCCCCGCCGCTGTCCCCGCTCTTTCAAGA
GCAGTATTGGTCCCGTCCGGTGCAGTCGCTGCCGTCGCCACCGCCGGAGA
AGCGCACACCGCTCGTCGCGTGGAGTGCCGACAAGACTGCAAAGCACCAC
GCTACACAGAAGCAACTGTGA