Gchil3517.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil3517.t1
Unique NameGchil3517.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length108
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004378_piloncontigtig00004378_pilon:882297..882620 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog6087.XP_002166123.1
Preferred nameHYPK
Max annot lvl33208|Metazoa
Evalue1.5e-13
EggNOG OGsKOG3450@1|root,KOG3450@2759|Eukaryota,3A99I@33154|Opisthokonta,3BQAP@33208|Metazoa
Descriptionhuntingtin interacting protein K
COG categoryS
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil3517Gchil3517Gracilaria chilensis NLEC103_M9 malegenetig00004378_pilon 882297..882620 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3517.t1.start1Gchil3517.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004378_pilon 882297..882299 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3517.t1.CDS1Gchil3517.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004378_pilon 882297..882620 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3517.t1.exon1Gchil3517.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004378_pilon 882297..882620 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3517.t1.stop1Gchil3517.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004378_pilon 882618..882620 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3517.t1Gchil3517.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004378_pilon 882297..882620 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil3517.t1 ID=Gchil3517.t1|Name=Gchil3517.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=108bp
MSTEADTDVKEKNKVRAKASGDLDKVTDYVEEREMDATKVADSMRAMLGN
ASSTKKSAVEKELINVKIQQSDVQLIVDELDLDPKDAEQALRKARGDVVK
ALCELVR*
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spliced messenger RNA

>Gchil3517.t1 ID=Gchil3517.t1|Name=Gchil3517.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=324bp|location=Sequence derived from alignment at tig00004378_pilon:882297..882620+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCCACCGAGGCGGACACAGATGTCAAGGAGAAGAACAAGGTGCGCGC
AAAGGCGTCAGGTGACCTGGACAAGGTGACTGATTATGTGGAAGAAAGAG
AAATGGATGCCACCAAGGTGGCGGACTCCATGAGAGCCATGCTAGGAAAT
GCTTCGTCGACGAAGAAGAGTGCCGTTGAAAAGGAGCTTATCAACGTCAA
GATTCAACAGTCGGATGTGCAACTCATTGTGGATGAACTGGATCTCGATC
CAAAGGACGCCGAACAAGCGTTGAGAAAAGCACGCGGTGACGTCGTCAAA
GCCCTGTGTGAATTGGTGCGATAA
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protein sequence of Gchil3517.t1

>Gchil3517.t1 ID=Gchil3517.t1|Name=Gchil3517.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=108bp
MSTEADTDVKEKNKVRAKASGDLDKVTDYVEEREMDATKVADSMRAMLGN
ASSTKKSAVEKELINVKIQQSDVQLIVDELDLDPKDAEQALRKARGDVVK
ALCELVR*
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mRNA from alignment at tig00004378_pilon:882297..882620+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil3517.t1 ID=Gchil3517.t1|Name=Gchil3517.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=324bp|location=Sequence derived from alignment at tig00004378_pilon:882297..882620+ (Gracilaria chilensis NLEC103_M9 male)
ATGTCCACCGAGGCGGACACAGATGTCAAGGAGAAGAACAAGGTGCGCGC
AAAGGCGTCAGGTGACCTGGACAAGGTGACTGATTATGTGGAAGAAAGAG
AAATGGATGCCACCAAGGTGGCGGACTCCATGAGAGCCATGCTAGGAAAT
GCTTCGTCGACGAAGAAGAGTGCCGTTGAAAAGGAGCTTATCAACGTCAA
GATTCAACAGTCGGATGTGCAACTCATTGTGGATGAACTGGATCTCGATC
CAAAGGACGCCGAACAAGCGTTGAGAAAAGCACGCGGTGACGTCGTCAAA
GCCCTGTGTGAATTGGTGCGATAA
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Coding sequence (CDS) from alignment at tig00004378_pilon:882297..882620+

>Gchil3517.t1 ID=Gchil3517.t1|Name=Gchil3517.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=324bp|location=Sequence derived from alignment at tig00004378_pilon:882297..882620+ (Gracilaria chilensis NLEC103_M9 male)
ATGTCCACCGAGGCGGACACAGATGTCAAGGAGAAGAACAAGGTGCGCGC
AAAGGCGTCAGGTGACCTGGACAAGGTGACTGATTATGTGGAAGAAAGAG
AAATGGATGCCACCAAGGTGGCGGACTCCATGAGAGCCATGCTAGGAAAT
GCTTCGTCGACGAAGAAGAGTGCCGTTGAAAAGGAGCTTATCAACGTCAA
GATTCAACAGTCGGATGTGCAACTCATTGTGGATGAACTGGATCTCGATC
CAAAGGACGCCGAACAAGCGTTGAGAAAAGCACGCGGTGACGTCGTCAAA
GCCCTGTGTGAATTGGTGCGATAA
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