Gchil3497.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil3497.t1
Unique NameGchil3497.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length450
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004378_piloncontigtig00004378_pilon:577825..579310 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog3218.PP1S89_67V6.1
PFAMsMetallophos,PMD
Max annot lvl35493|Streptophyta
KEGG koko:K04460,ko:K15423
KEGG Pathwayko04010,ko04922,map04010,map04922
GOsGO:0003674,GO:0003824,GO:0004721,GO:0004722,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0006464,GO:0006470,GO:0006793,GO:0006796,GO:0006807,GO:0006950,GO:0007154,GO:0007165,GO:0008150,GO:0008152,GO:0009266,GO:0009314,GO:0009408,GO:0009416,GO:0009628,GO:0009637,GO:0009785,GO:0009987,GO:0016311,GO:0016787,GO:0016788,GO:0016791,GO:0019538,GO:0023052,GO:0030522,GO:0036211,GO:0042578,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044424,GO:0044464,GO:0050789,GO:0050794,GO:0050896,GO:0051716,GO:0065007,GO:0071214,GO:0071478,GO:0071482,GO:0071483,GO:0071704,GO:0104004,GO:0140096,GO:1901564
Evalue3.25e-52
EggNOG OGsCOG0639@1|root,KOG0376@2759|Eukaryota,37KC8@33090|Viridiplantae,3GDZR@35493|Streptophyta
EC3.1.3.16
Descriptionserine threonine-protein phosphatase
COG categoryQ
BRITEko00000,ko00001,ko01000,ko01009,ko03400
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil3497Gchil3497Gracilaria chilensis NLEC103_M9 malegenetig00004378_pilon 577825..579310 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3497.t1Gchil3497.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004378_pilon 577825..579310 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3497.t1.stop1Gchil3497.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004378_pilon 577825..577827 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3497.t1.CDS1Gchil3497.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004378_pilon 577825..578012 -
Gchil3497.t1.CDS2Gchil3497.t1.CDS2Gracilaria chilensis NLEC103_M9 maleCDStig00004378_pilon 578087..578736 -
Gchil3497.t1.CDS3Gchil3497.t1.CDS3Gracilaria chilensis NLEC103_M9 maleCDStig00004378_pilon 578799..579310 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3497.t1.exon1Gchil3497.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004378_pilon 577825..578012 -
Gchil3497.t1.exon2Gchil3497.t1.exon2Gracilaria chilensis NLEC103_M9 maleexontig00004378_pilon 578087..578736 -
Gchil3497.t1.exon3Gchil3497.t1.exon3Gracilaria chilensis NLEC103_M9 maleexontig00004378_pilon 578799..579310 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3497.t1.intron1Gchil3497.t1.intron1Gracilaria chilensis NLEC103_M9 maleintrontig00004378_pilon 578013..578086 -
Gchil3497.t1.intron2Gchil3497.t1.intron2Gracilaria chilensis NLEC103_M9 maleintrontig00004378_pilon 578737..578798 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3497.t1.start1Gchil3497.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004378_pilon 579308..579310 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil3497.t1 ID=Gchil3497.t1|Name=Gchil3497.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=450bp
MSSIHPLLTLADDAGERGENLECVKPLPWPGIEKVDLDYVKALAKRLLAA
SHRPPDLLNLFALRKAHLLKILLHAKERFSEEQNIVDVIVPYCGNVRIFG
DTHGDFHSLMEAIDRAGLPSANNIFVFAGDCVDRGCWGVEIVTLIFALKL
CNPSYVFLVRGNHETTGCTKRYGFENEVNRKYDSKTFDLFCKTFRELPVA
AVLRSLPSEILELPVVVNRAAGKHRRTTMRKKRAGSPAVNAVPQGQGWRS
DPVPGEKRILVVHGGLFRSWKAKKRCIMTIGDLSDLAEVNRRDDDPYECL
LEDVIWSDPSGKNEVSCNILRGAGILYGTGAVQAFFKRNGLCGMIRAHEG
PDVRERRADMNRIDDGYSIDMDLAEGFVATVFTAADYPPDQPRGNKGAFA
TIYGKGTEKKQVLPEFTSFTKRDAPAEMQLFYLPERSEQPATPRTSFSK*
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spliced messenger RNA

>Gchil3497.t1 ID=Gchil3497.t1|Name=Gchil3497.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1350bp|location=Sequence derived from alignment at tig00004378_pilon:577825..579310- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAGCAGCATCCACCCGCTTCTGACACTAGCGGACGACGCTGGGGAACG
TGGTGAAAACCTTGAATGTGTAAAGCCACTTCCATGGCCTGGCATAGAAA
AAGTTGACTTGGATTATGTTAAAGCGCTTGCGAAGCGACTACTGGCAGCG
AGTCACCGCCCACCAGACTTGCTAAACCTGTTTGCATTGCGCAAAGCACA
TCTACTCAAAATTCTGCTCCATGCTAAAGAAAGATTTTCCGAAGAACAGA
ACATTGTCGACGTTATCGTACCGTATTGTGGAAATGTTCGCATTTTCGGC
GACACCCATGGAGACTTTCATTCATTAATGGAGGCCATCGATAGAGCAGG
ACTGCCTTCGGCAAACAACATTTTCGTCTTCGCTGGCGACTGCGTTGACC
GCGGTTGTTGGGGTGTGGAAATTGTGACACTGATTTTTGCCCTAAAGCTA
TGTAACCCATCTTACGTTTTTCTTGTGCGCGGAAATCACGAAACCACCGG
GTGCACTAAACGCTATGGGTTCGAGAACGAGGTGAATCGAAAGTATGACT
CGAAGACGTTTGATTTGTTTTGCAAAACTTTTAGAGAGCTTCCTGTTGCA
GCTGTACTGCGGTCACTTCCTTCCGAGATATTGGAATTGCCTGTAGTCGT
TAACCGAGCTGCAGGAAAACATCGGCGTACAACAATGAGGAAAAAACGGG
CGGGTTCTCCTGCAGTGAATGCAGTACCCCAAGGACAAGGATGGCGTTCA
GATCCAGTCCCCGGCGAAAAGCGCATATTAGTTGTTCATGGCGGATTATT
CCGCTCATGGAAGGCAAAAAAGCGATGCATCATGACTATTGGAGATCTCT
CTGACTTGGCGGAAGTGAATCGCCGAGATGATGACCCTTATGAATGTCTT
CTGGAAGACGTAATCTGGAGCGATCCATCGGGAAAGAACGAAGTGTCGTG
CAACATACTACGAGGTGCTGGGATCCTTTACGGCACGGGAGCCGTTCAGG
CATTCTTTAAGCGCAATGGTCTTTGTGGAATGATTCGGGCACATGAAGGT
CCTGATGTACGCGAACGTCGGGCCGATATGAATAGAATAGATGACGGCTA
TTCAATAGACATGGATTTAGCTGAAGGATTCGTTGCGACGGTTTTCACTG
CAGCTGATTATCCCCCAGATCAACCAAGGGGGAACAAGGGAGCCTTTGCC
ACGATATACGGAAAAGGAACTGAAAAGAAGCAAGTCTTACCAGAGTTCAC
TTCTTTCACAAAACGCGACGCTCCCGCTGAGATGCAATTATTCTATTTGC
CAGAAAGAAGCGAGCAGCCTGCAACTCCCCGGACCAGCTTCTCAAAGTAA
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protein sequence of Gchil3497.t1

>Gchil3497.t1 ID=Gchil3497.t1|Name=Gchil3497.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=450bp
MSSIHPLLTLADDAGERGENLECVKPLPWPGIEKVDLDYVKALAKRLLAA
SHRPPDLLNLFALRKAHLLKILLHAKERFSEEQNIVDVIVPYCGNVRIFG
DTHGDFHSLMEAIDRAGLPSANNIFVFAGDCVDRGCWGVEIVTLIFALKL
CNPSYVFLVRGNHETTGCTKRYGFENEVNRKYDSKTFDLFCKTFRELPVA
AVLRSLPSEILELPVVVNRAAGKHRRTTMRKKRAGSPAVNAVPQGQGWRS
DPVPGEKRILVVHGGLFRSWKAKKRCIMTIGDLSDLAEVNRRDDDPYECL
LEDVIWSDPSGKNEVSCNILRGAGILYGTGAVQAFFKRNGLCGMIRAHEG
PDVRERRADMNRIDDGYSIDMDLAEGFVATVFTAADYPPDQPRGNKGAFA
TIYGKGTEKKQVLPEFTSFTKRDAPAEMQLFYLPERSEQPATPRTSFSK*
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mRNA from alignment at tig00004378_pilon:577825..579310-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil3497.t1 ID=Gchil3497.t1|Name=Gchil3497.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1486bp|location=Sequence derived from alignment at tig00004378_pilon:577825..579310- (Gracilaria chilensis NLEC103_M9 male)
ATGAGCAGCATCCACCCGCTTCTGACACTAGCGGACGACGCTGGGGAACG
TGGTGAAAACCTTGAATGTGTAAAGCCACTTCCATGGCCTGGCATAGAAA
AAGTTGACTTGGATTATGTTAAAGCGCTTGCGAAGCGACTACTGGCAGCG
AGTCACCGCCCACCAGACTTGCTAAACCTGTTTGCATTGCGCAAAGCACA
TCTACTCAAAATTCTGCTCCATGCTAAAGAAAGATTTTCCGAAGAACAGA
ACATTGTCGACGTTATCGTACCGTATTGTGGAAATGTTCGCATTTTCGGC
GACACCCATGGAGACTTTCATTCATTAATGGAGGCCATCGATAGAGCAGG
ACTGCCTTCGGCAAACAACATTTTCGTCTTCGCTGGCGACTGCGTTGACC
GCGGTTGTTGGGGTGTGGAAATTGTGACACTGATTTTTGCCCTAAAGCTA
TGTAACCCATCTTACGTTTTTCTTGTGCGCGGAAATCACGAAACCACCGG
GTGCACTAAACGGTACGTCACGTAGCTCTTATTTTGCACTACTGCTTGAA
AGTGTATCTGACGTGTTGCTATAGCTATGGGTTCGAGAACGAGGTGAATC
GAAAGTATGACTCGAAGACGTTTGATTTGTTTTGCAAAACTTTTAGAGAG
CTTCCTGTTGCAGCTGTACTGCGGTCACTTCCTTCCGAGATATTGGAATT
GCCTGTAGTCGTTAACCGAGCTGCAGGAAAACATCGGCGTACAACAATGA
GGAAAAAACGGGCGGGTTCTCCTGCAGTGAATGCAGTACCCCAAGGACAA
GGATGGCGTTCAGATCCAGTCCCCGGCGAAAAGCGCATATTAGTTGTTCA
TGGCGGATTATTCCGCTCATGGAAGGCAAAAAAGCGATGCATCATGACTA
TTGGAGATCTCTCTGACTTGGCGGAAGTGAATCGCCGAGATGATGACCCT
TATGAATGTCTTCTGGAAGACGTAATCTGGAGCGATCCATCGGGAAAGAA
CGAAGTGTCGTGCAACATACTACGAGGTGCTGGGATCCTTTACGGCACGG
GAGCCGTTCAGGCATTCTTTAAGCGCAATGGTCTTTGTGGAATGATTCGG
GCACATGAAGGTCCTGATGTACGCGAACGTCGGGCCGATATGAATAGAAT
AGATGACGGCTATTCAATAGACATGGATTTAGCTGAAGGATTCGTTGCGA
CGGTTTTCACTGCAGCTGATTATCGTAAGTTTACACCCATCTCATTGTTG
TTCATATTGCACATGCTAAACCATTCATTCTTCCTTTTCAAAATGCAGCC
CCAGATCAACCAAGGGGGAACAAGGGAGCCTTTGCCACGATATACGGAAA
AGGAACTGAAAAGAAGCAAGTCTTACCAGAGTTCACTTCTTTCACAAAAC
GCGACGCTCCCGCTGAGATGCAATTATTCTATTTGCCAGAAAGAAGCGAG
CAGCCTGCAACTCCCCGGACCAGCTTCTCAAAGTAA
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Coding sequence (CDS) from alignment at tig00004378_pilon:577825..579310-

>Gchil3497.t1 ID=Gchil3497.t1|Name=Gchil3497.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1350bp|location=Sequence derived from alignment at tig00004378_pilon:577825..579310- (Gracilaria chilensis NLEC103_M9 male)
ATGAGCAGCATCCACCCGCTTCTGACACTAGCGGACGACGCTGGGGAACG
TGGTGAAAACCTTGAATGTGTAAAGCCACTTCCATGGCCTGGCATAGAAA
AAGTTGACTTGGATTATGTTAAAGCGCTTGCGAAGCGACTACTGGCAGCG
AGTCACCGCCCACCAGACTTGCTAAACCTGTTTGCATTGCGCAAAGCACA
TCTACTCAAAATTCTGCTCCATGCTAAAGAAAGATTTTCCGAAGAACAGA
ACATTGTCGACGTTATCGTACCGTATTGTGGAAATGTTCGCATTTTCGGC
GACACCCATGGAGACTTTCATTCATTAATGGAGGCCATCGATAGAGCAGG
ACTGCCTTCGGCAAACAACATTTTCGTCTTCGCTGGCGACTGCGTTGACC
GCGGTTGTTGGGGTGTGGAAATTGTGACACTGATTTTTGCCCTAAAGCTA
TGTAACCCATCTTACGTTTTTCTTGTGCGCGGAAATCACGAAACCACCGG
GTGCACTAAACGCTATGGGTTCGAGAACGAGGTGAATCGAAAGTATGACT
CGAAGACGTTTGATTTGTTTTGCAAAACTTTTAGAGAGCTTCCTGTTGCA
GCTGTACTGCGGTCACTTCCTTCCGAGATATTGGAATTGCCTGTAGTCGT
TAACCGAGCTGCAGGAAAACATCGGCGTACAACAATGAGGAAAAAACGGG
CGGGTTCTCCTGCAGTGAATGCAGTACCCCAAGGACAAGGATGGCGTTCA
GATCCAGTCCCCGGCGAAAAGCGCATATTAGTTGTTCATGGCGGATTATT
CCGCTCATGGAAGGCAAAAAAGCGATGCATCATGACTATTGGAGATCTCT
CTGACTTGGCGGAAGTGAATCGCCGAGATGATGACCCTTATGAATGTCTT
CTGGAAGACGTAATCTGGAGCGATCCATCGGGAAAGAACGAAGTGTCGTG
CAACATACTACGAGGTGCTGGGATCCTTTACGGCACGGGAGCCGTTCAGG
CATTCTTTAAGCGCAATGGTCTTTGTGGAATGATTCGGGCACATGAAGGT
CCTGATGTACGCGAACGTCGGGCCGATATGAATAGAATAGATGACGGCTA
TTCAATAGACATGGATTTAGCTGAAGGATTCGTTGCGACGGTTTTCACTG
CAGCTGATTATCCCCCAGATCAACCAAGGGGGAACAAGGGAGCCTTTGCC
ACGATATACGGAAAAGGAACTGAAAAGAAGCAAGTCTTACCAGAGTTCAC
TTCTTTCACAAAACGCGACGCTCCCGCTGAGATGCAATTATTCTATTTGC
CAGAAAGAAGCGAGCAGCCTGCAACTCCCCGGACCAGCTTCTCAAAGTAA
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