Gchil3485.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gchil3485.t1
Unique Name	Gchil3485.t1
Type	mRNA
Organism	Gracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length	595

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00004378_pilon	contig	tig00004378_pilon:540614..542398 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria chilensis NLEC103_M9 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	1136417.AZWE01000056_gene320
Preferred name	glsA
PFAMs	Glutaminase
Max annot lvl	201174\|Actinobacteria
KEGG rclass	RC00010,RC02798
KEGG ko	ko:K01425
KEGG Reaction	R00256,R01579
KEGG Pathway	ko00220,ko00250,ko00471,ko01100,ko04724,ko04727,ko04964,ko05206,ko05230,map00220,map00250,map00471,map01100,map04724,map04727,map04964,map05206,map05230
GOs	GO:0003674,GO:0003824,GO:0004359,GO:0006082,GO:0006520,GO:0006536,GO:0006537,GO:0006541,GO:0006543,GO:0006807,GO:0008150,GO:0008152,GO:0008652,GO:0009056,GO:0009058,GO:0009063,GO:0009064,GO:0009065,GO:0009084,GO:0009987,GO:0016053,GO:0016054,GO:0016787,GO:0016810,GO:0016811,GO:0019752,GO:0043436,GO:0043648,GO:0043650,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044281,GO:0044282,GO:0044283,GO:0046394,GO:0046395,GO:0071704,GO:1901564,GO:1901565,GO:1901566,GO:1901575,GO:1901576,GO:1901605,GO:1901606,GO:1901607
Evalue	3.13e-87
EggNOG OGs	COG0666@1\|root,COG2066@1\|root,COG0666@2\|Bacteria,COG2066@2\|Bacteria,2GKAV@201174\|Actinobacteria,4DDJY@85008\|Micromonosporales
EC	3.5.1.2
Description	Glutaminase
COG category	E
BRITE	ko00000,ko00001,ko01000

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gchil3485	Gchil3485	Gracilaria chilensis NLEC103_M9 male	gene	tig00004378_pilon 540614..542398 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil3485.t1.start1	Gchil3485.t1.start1	Gracilaria chilensis NLEC103_M9 male	start_codon	tig00004378_pilon 540614..540616 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil3485.t1.CDS1	Gchil3485.t1.CDS1	Gracilaria chilensis NLEC103_M9 male	CDS	tig00004378_pilon 540614..542398 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil3485.t1.exon1	Gchil3485.t1.exon1	Gracilaria chilensis NLEC103_M9 male	exon	tig00004378_pilon 540614..542398 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil3485.t1.stop1	Gchil3485.t1.stop1	Gracilaria chilensis NLEC103_M9 male	stop_codon	tig00004378_pilon 542396..542398 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil3485.t1	Gchil3485.t1	Gracilaria chilensis NLEC103_M9 male	polypeptide	tig00004378_pilon 540614..542398 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00004378_pilon:540614..542398+
coding sequence from alignment at tig00004378_pilon:540614..542398+

mRNA sequence

>Gchil3485.t1 ID=Gchil3485.t1|Name=Gchil3485.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=595bp
MVGLGGTNSGVHVQRIRDVVAETGIIVEENTPDPRLQQLWKALEKYKPDH
ELSEHEFINIASDNLMLLHRIASKEMVIKNFKEFKGHLDSLKSIIEPIEA
GKNADYIPILKDVDPNKFGVAFCSVDGQFYESGDTREMFSVQSTCKPIMF
ALALEKLGQRKILEWCGVEPSGRPFNDLTLMSDERPFNPMINSGALMIAG
LLATAFPDIANGDGPYGEDNTYAQRVCEEVLLPLWARLGAADIFERLNVG
FSQETFLSERGTANRNIAITHNMKATDKGLPSNVDTQYMIDFYLRSCSIT
SNAAAMSVVAATLANGGKNPITDDQVFRVDVVKRTLSVLSLCGFYDNSGE
FFFDTGIPSKSGVSGIVMMVLPNVGGFAIFSPRLDKYGNSVRGSLFAKEL
VRTFTFHTFDNLSSLSTGCKLDPRFNCDASRQRHLSRLRWAIKANGKQAI
RFDELLVYICFRIALVDGKLGDKERRIIEDSYREVMHLDLSQDRIDKILK
ILDVPSNELQNLKSHVEEEAMHLNDTEKEVILAVAVKVATADGKACSSER
DVLRELADALSIQQWVLKLRLDGWSTELAQQGQSNAARAGCCLS*

spliced messenger RNA

>Gchil3485.t1 ID=Gchil3485.t1|Name=Gchil3485.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1785bp|location=Sequence derived from alignment at tig00004378_pilon:540614..542398+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGTAGGTCTGGGAGGTACGAATTCCGGCGTACATGTCCAGCGCATCCG
AGATGTTGTTGCAGAAACAGGGATAATTGTGGAAGAAAACACACCAGATC
CAAGATTGCAACAGCTGTGGAAGGCCCTGGAGAAATATAAACCAGACCAT
GAGCTTTCTGAACACGAGTTCATAAATATTGCTTCTGACAATCTTATGCT
CTTGCATCGTATCGCCTCGAAAGAAATGGTTATTAAAAACTTCAAGGAGT
TCAAGGGACACCTGGATTCTTTGAAGTCAATTATTGAACCAATAGAGGCG
GGTAAGAACGCAGACTACATTCCCATATTGAAAGATGTTGATCCGAACAA
GTTTGGGGTTGCTTTCTGTTCGGTTGATGGGCAGTTCTATGAATCTGGGG
ACACTAGAGAGATGTTTAGTGTTCAAAGTACTTGTAAGCCAATCATGTTC
GCTCTCGCCCTAGAAAAGCTGGGACAAAGAAAGATACTCGAATGGTGTGG
CGTTGAACCGAGCGGCCGACCCTTCAACGACTTGACTCTTATGAGTGACG
AGAGACCCTTTAACCCTATGATCAACAGTGGTGCGCTTATGATAGCTGGA
CTTTTGGCAACTGCCTTTCCGGACATCGCCAACGGCGATGGACCTTATGG
GGAAGATAACACTTATGCTCAACGAGTATGTGAAGAGGTATTACTGCCGC
TATGGGCTCGCTTAGGTGCGGCTGATATTTTTGAGCGACTCAACGTTGGA
TTTTCTCAGGAGACGTTTTTGTCTGAGCGCGGAACAGCCAACAGGAATAT
TGCAATCACTCACAATATGAAAGCCACAGACAAGGGCTTACCGTCCAATG
TGGACACTCAGTACATGATTGACTTTTACCTTCGTTCTTGTTCTATCACT
TCTAATGCTGCTGCAATGTCAGTTGTTGCAGCAACTTTGGCAAACGGTGG
CAAAAACCCGATCACGGATGACCAAGTGTTTAGGGTGGACGTTGTGAAGA
GAACGCTCTCCGTGTTGAGTCTGTGTGGGTTCTATGACAACTCTGGAGAA
TTTTTTTTTGACACGGGGATTCCTTCAAAATCTGGTGTGAGTGGTATCGT
TATGATGGTCTTGCCCAACGTTGGTGGATTTGCAATATTCTCTCCTCGCC
TCGATAAATACGGAAATTCAGTTCGCGGATCTTTGTTCGCGAAAGAATTG
GTAAGAACTTTTACATTCCATACATTCGATAATTTGTCATCGCTTTCAAC
AGGCTGCAAGCTCGATCCTCGTTTTAATTGTGATGCATCTCGTCAAAGAC
ATTTGTCACGCCTGCGTTGGGCAATTAAAGCAAACGGAAAACAGGCCATC
AGATTTGACGAGCTCCTTGTGTATATCTGCTTCCGAATCGCCTTGGTTGA
TGGAAAACTTGGGGATAAGGAACGAAGAATAATTGAAGATTCGTATAGAG
AAGTCATGCATCTCGATTTGTCTCAAGACCGTATTGATAAGATACTGAAG
ATACTTGACGTGCCATCCAACGAATTGCAAAACCTGAAAAGTCACGTTGA
GGAAGAAGCTATGCACCTCAATGATACTGAAAAAGAAGTGATTCTTGCCG
TCGCCGTCAAAGTTGCAACAGCAGATGGAAAGGCGTGTAGTTCCGAAAGA
GATGTGCTCCGAGAACTTGCGGATGCATTGTCCATCCAGCAATGGGTTCT
GAAACTCCGGTTGGACGGTTGGAGTACAGAACTTGCTCAACAGGGACAAA
GCAATGCAGCCCGTGCTGGTTGCTGTCTCTCTTAA

protein sequence of Gchil3485.t1

>Gchil3485.t1 ID=Gchil3485.t1|Name=Gchil3485.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=595bp
MVGLGGTNSGVHVQRIRDVVAETGIIVEENTPDPRLQQLWKALEKYKPDH
ELSEHEFINIASDNLMLLHRIASKEMVIKNFKEFKGHLDSLKSIIEPIEA
GKNADYIPILKDVDPNKFGVAFCSVDGQFYESGDTREMFSVQSTCKPIMF
ALALEKLGQRKILEWCGVEPSGRPFNDLTLMSDERPFNPMINSGALMIAG
LLATAFPDIANGDGPYGEDNTYAQRVCEEVLLPLWARLGAADIFERLNVG
FSQETFLSERGTANRNIAITHNMKATDKGLPSNVDTQYMIDFYLRSCSIT
SNAAAMSVVAATLANGGKNPITDDQVFRVDVVKRTLSVLSLCGFYDNSGE
FFFDTGIPSKSGVSGIVMMVLPNVGGFAIFSPRLDKYGNSVRGSLFAKEL
VRTFTFHTFDNLSSLSTGCKLDPRFNCDASRQRHLSRLRWAIKANGKQAI
RFDELLVYICFRIALVDGKLGDKERRIIEDSYREVMHLDLSQDRIDKILK
ILDVPSNELQNLKSHVEEEAMHLNDTEKEVILAVAVKVATADGKACSSER
DVLRELADALSIQQWVLKLRLDGWSTELAQQGQSNAARAGCCLS*

mRNA from alignment at tig00004378_pilon:540614..542398+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gchil3485.t1 ID=Gchil3485.t1|Name=Gchil3485.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1785bp|location=Sequence derived from alignment at tig00004378_pilon:540614..542398+ (Gracilaria chilensis NLEC103_M9 male)
ATGGTAGGTCTGGGAGGTACGAATTCCGGCGTACATGTCCAGCGCATCCG
AGATGTTGTTGCAGAAACAGGGATAATTGTGGAAGAAAACACACCAGATC
CAAGATTGCAACAGCTGTGGAAGGCCCTGGAGAAATATAAACCAGACCAT
GAGCTTTCTGAACACGAGTTCATAAATATTGCTTCTGACAATCTTATGCT
CTTGCATCGTATCGCCTCGAAAGAAATGGTTATTAAAAACTTCAAGGAGT
TCAAGGGACACCTGGATTCTTTGAAGTCAATTATTGAACCAATAGAGGCG
GGTAAGAACGCAGACTACATTCCCATATTGAAAGATGTTGATCCGAACAA
GTTTGGGGTTGCTTTCTGTTCGGTTGATGGGCAGTTCTATGAATCTGGGG
ACACTAGAGAGATGTTTAGTGTTCAAAGTACTTGTAAGCCAATCATGTTC
GCTCTCGCCCTAGAAAAGCTGGGACAAAGAAAGATACTCGAATGGTGTGG
CGTTGAACCGAGCGGCCGACCCTTCAACGACTTGACTCTTATGAGTGACG
AGAGACCCTTTAACCCTATGATCAACAGTGGTGCGCTTATGATAGCTGGA
CTTTTGGCAACTGCCTTTCCGGACATCGCCAACGGCGATGGACCTTATGG
GGAAGATAACACTTATGCTCAACGAGTATGTGAAGAGGTATTACTGCCGC
TATGGGCTCGCTTAGGTGCGGCTGATATTTTTGAGCGACTCAACGTTGGA
TTTTCTCAGGAGACGTTTTTGTCTGAGCGCGGAACAGCCAACAGGAATAT
TGCAATCACTCACAATATGAAAGCCACAGACAAGGGCTTACCGTCCAATG
TGGACACTCAGTACATGATTGACTTTTACCTTCGTTCTTGTTCTATCACT
TCTAATGCTGCTGCAATGTCAGTTGTTGCAGCAACTTTGGCAAACGGTGG
CAAAAACCCGATCACGGATGACCAAGTGTTTAGGGTGGACGTTGTGAAGA
GAACGCTCTCCGTGTTGAGTCTGTGTGGGTTCTATGACAACTCTGGAGAA
TTTTTTTTTGACACGGGGATTCCTTCAAAATCTGGTGTGAGTGGTATCGT
TATGATGGTCTTGCCCAACGTTGGTGGATTTGCAATATTCTCTCCTCGCC
TCGATAAATACGGAAATTCAGTTCGCGGATCTTTGTTCGCGAAAGAATTG
GTAAGAACTTTTACATTCCATACATTCGATAATTTGTCATCGCTTTCAAC
AGGCTGCAAGCTCGATCCTCGTTTTAATTGTGATGCATCTCGTCAAAGAC
ATTTGTCACGCCTGCGTTGGGCAATTAAAGCAAACGGAAAACAGGCCATC
AGATTTGACGAGCTCCTTGTGTATATCTGCTTCCGAATCGCCTTGGTTGA
TGGAAAACTTGGGGATAAGGAACGAAGAATAATTGAAGATTCGTATAGAG
AAGTCATGCATCTCGATTTGTCTCAAGACCGTATTGATAAGATACTGAAG
ATACTTGACGTGCCATCCAACGAATTGCAAAACCTGAAAAGTCACGTTGA
GGAAGAAGCTATGCACCTCAATGATACTGAAAAAGAAGTGATTCTTGCCG
TCGCCGTCAAAGTTGCAACAGCAGATGGAAAGGCGTGTAGTTCCGAAAGA
GATGTGCTCCGAGAACTTGCGGATGCATTGTCCATCCAGCAATGGGTTCT
GAAACTCCGGTTGGACGGTTGGAGTACAGAACTTGCTCAACAGGGACAAA
GCAATGCAGCCCGTGCTGGTTGCTGTCTCTCTTAA

Coding sequence (CDS) from alignment at tig00004378_pilon:540614..542398+

>Gchil3485.t1 ID=Gchil3485.t1|Name=Gchil3485.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1785bp|location=Sequence derived from alignment at tig00004378_pilon:540614..542398+ (Gracilaria chilensis NLEC103_M9 male)
ATGGTAGGTCTGGGAGGTACGAATTCCGGCGTACATGTCCAGCGCATCCG
AGATGTTGTTGCAGAAACAGGGATAATTGTGGAAGAAAACACACCAGATC
CAAGATTGCAACAGCTGTGGAAGGCCCTGGAGAAATATAAACCAGACCAT
GAGCTTTCTGAACACGAGTTCATAAATATTGCTTCTGACAATCTTATGCT
CTTGCATCGTATCGCCTCGAAAGAAATGGTTATTAAAAACTTCAAGGAGT
TCAAGGGACACCTGGATTCTTTGAAGTCAATTATTGAACCAATAGAGGCG
GGTAAGAACGCAGACTACATTCCCATATTGAAAGATGTTGATCCGAACAA
GTTTGGGGTTGCTTTCTGTTCGGTTGATGGGCAGTTCTATGAATCTGGGG
ACACTAGAGAGATGTTTAGTGTTCAAAGTACTTGTAAGCCAATCATGTTC
GCTCTCGCCCTAGAAAAGCTGGGACAAAGAAAGATACTCGAATGGTGTGG
CGTTGAACCGAGCGGCCGACCCTTCAACGACTTGACTCTTATGAGTGACG
AGAGACCCTTTAACCCTATGATCAACAGTGGTGCGCTTATGATAGCTGGA
CTTTTGGCAACTGCCTTTCCGGACATCGCCAACGGCGATGGACCTTATGG
GGAAGATAACACTTATGCTCAACGAGTATGTGAAGAGGTATTACTGCCGC
TATGGGCTCGCTTAGGTGCGGCTGATATTTTTGAGCGACTCAACGTTGGA
TTTTCTCAGGAGACGTTTTTGTCTGAGCGCGGAACAGCCAACAGGAATAT
TGCAATCACTCACAATATGAAAGCCACAGACAAGGGCTTACCGTCCAATG
TGGACACTCAGTACATGATTGACTTTTACCTTCGTTCTTGTTCTATCACT
TCTAATGCTGCTGCAATGTCAGTTGTTGCAGCAACTTTGGCAAACGGTGG
CAAAAACCCGATCACGGATGACCAAGTGTTTAGGGTGGACGTTGTGAAGA
GAACGCTCTCCGTGTTGAGTCTGTGTGGGTTCTATGACAACTCTGGAGAA
TTTTTTTTTGACACGGGGATTCCTTCAAAATCTGGTGTGAGTGGTATCGT
TATGATGGTCTTGCCCAACGTTGGTGGATTTGCAATATTCTCTCCTCGCC
TCGATAAATACGGAAATTCAGTTCGCGGATCTTTGTTCGCGAAAGAATTG
GTAAGAACTTTTACATTCCATACATTCGATAATTTGTCATCGCTTTCAAC
AGGCTGCAAGCTCGATCCTCGTTTTAATTGTGATGCATCTCGTCAAAGAC
ATTTGTCACGCCTGCGTTGGGCAATTAAAGCAAACGGAAAACAGGCCATC
AGATTTGACGAGCTCCTTGTGTATATCTGCTTCCGAATCGCCTTGGTTGA
TGGAAAACTTGGGGATAAGGAACGAAGAATAATTGAAGATTCGTATAGAG
AAGTCATGCATCTCGATTTGTCTCAAGACCGTATTGATAAGATACTGAAG
ATACTTGACGTGCCATCCAACGAATTGCAAAACCTGAAAAGTCACGTTGA
GGAAGAAGCTATGCACCTCAATGATACTGAAAAAGAAGTGATTCTTGCCG
TCGCCGTCAAAGTTGCAACAGCAGATGGAAAGGCGTGTAGTTCCGAAAGA
GATGTGCTCCGAGAACTTGCGGATGCATTGTCCATCCAGCAATGGGTTCT
GAAACTCCGGTTGGACGGTTGGAGTACAGAACTTGCTCAACAGGGACAAA
GCAATGCAGCCCGTGCTGGTTGCTGTCTCTCTTAA