Gchil3483.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gchil3483.t1
Unique Name	Gchil3483.t1
Type	mRNA
Organism	Gracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length	465

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00004378_pilon	contig	tig00004378_pilon:533254..534648 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria chilensis NLEC103_M9 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	70448.Q00WH2
PFAMs	PRP4,WD40
Max annot lvl	3041\|Chlorophyta
KEGG ko	ko:K12662
KEGG Pathway	ko03040,map03040
KEGG Module	M00354
Evalue	1.93e-29
EggNOG OGs	KOG0272@1\|root,KOG0272@2759\|Eukaryota,37HYM@33090\|Viridiplantae,34JFC@3041\|Chlorophyta
Description	pre-mRNA processing factor 4 (PRP4) like
COG category	A
BRITE	ko00000,ko00001,ko00002,ko03041

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gchil3483	Gchil3483	Gracilaria chilensis NLEC103_M9 male	gene	tig00004378_pilon 533254..534648 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil3483.t1.start1	Gchil3483.t1.start1	Gracilaria chilensis NLEC103_M9 male	start_codon	tig00004378_pilon 533254..533256 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil3483.t1.CDS1	Gchil3483.t1.CDS1	Gracilaria chilensis NLEC103_M9 male	CDS	tig00004378_pilon 533254..534648 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil3483.t1.exon1	Gchil3483.t1.exon1	Gracilaria chilensis NLEC103_M9 male	exon	tig00004378_pilon 533254..534648 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil3483.t1.stop1	Gchil3483.t1.stop1	Gracilaria chilensis NLEC103_M9 male	stop_codon	tig00004378_pilon 534646..534648 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil3483.t1	Gchil3483.t1	Gracilaria chilensis NLEC103_M9 male	polypeptide	tig00004378_pilon 533254..534648 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00004378_pilon:533254..534648+
coding sequence from alignment at tig00004378_pilon:533254..534648+

mRNA sequence

>Gchil3483.t1 ID=Gchil3483.t1|Name=Gchil3483.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=465bp
MEGACHAREQQQLVPTDDTAVRAALRRRRHPVCLFGEDAYDRRARLRALY
AAAVAVAAASPPSSPPSSPPSSPPSSSPPSAPPAPRDDGAPATEFYTEGA
PRLRQLRVAVARASLRAAAARLRAERARSGDADAAARWRCRDAVVLEQVR
RAASIASHAAGTRPLSAACYCVTERHGDLVVTADWAGELRVWRQTHGSDA
PATLLATLPLHEGRVSAARFRAGLLTTASADGTAVVCELRDTGFERVATL
VAHRARVTDARVCPVRRSMVATAALDGDLCLWDGDVCVLRQHTGHCGGVF
ALAFHHDGGLLASAGCDAALRLWDMRSGRAVRTLPNAHADALTAAHFVPR
ASWLVSAGKDHCVRVWDVRTMRVLYTVAAHANVVSDLALDEHGHVLFSAG
FDCCVKAWALQRECALVACWPRFDDKILALACRPDASRVVAACYDKTWRL
WGCPTRPPPPDHSA*

spliced messenger RNA

>Gchil3483.t1 ID=Gchil3483.t1|Name=Gchil3483.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1395bp|location=Sequence derived from alignment at tig00004378_pilon:533254..534648+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGAGGGGGCGTGCCACGCGCGCGAGCAGCAGCAGCTCGTGCCCACTGA
CGACAccgccgtacgcgccgcgctgcgccgccgccgccaccccgTCTGTC
TCTTCGGCGAGGATGCGTACGACCGTCGCGCCCGCCTCCGCgctctctac
gccgccgccgtcgccgtcgccgccgcctcgccgccgtcctcgccgccgtc
ctcgccgccgtcctcgccgccgtcTTCCTCGCCGCCTTCCGCGCCCCCGG
CGCCGCGCGACGACGGCGCGCCCGCGACCGAGTTCTACACCGAGGGCGCG
CCGCGCCTGCGCCAGCTGCGCGTGGCCGTGGCGCGCGCGTCGTTGCGCGC
CGCCGCCGCGCGTCTGCGAGCCGAGCGCGCGCGCAGTGGAGACGCAGACG
CCGCCGCGCGGTGGCGTTGTCGCGATGCCGTCGTGCTGGAACAAGTGCGT
CGCGCCGCGTCCATAGCGTCGCACGCGGCCGGAACACGCCCGCTGTCGGC
CGCGTGCTACTGTGTCACCGAGCGACACGGCGACCTCGTCGTCACCGCCG
ACTGGGCCGGCGAGCTGCGCGTCTGGCGCCAGACACACGGCTCCGACGCC
CCCGCCACGCTGCTCGCCACGCTTCCGCTGCATGAGGGCCGCGTGTCGGC
CGCGCGCTTTCGCGCCGGTCTGCTCACTACTGCGTCGGCTGACGGCACCG
CCGTCGTGTGCGAGCTTCGCGACACTGGCTTTGAGCGAGTTGCCACGCTT
GTGGCACATCGCGCACGCGTGACGGATGCGCGCGTGTGTCCGGTGCGACG
CTCAATGGTTGCAACGGCCGCGCTGGACGGCGACTTGTGTCTGTGGGATG
GCGATGTGTGCGTGTTACGTCAACACACCGGCCATTGTGGCGGCGTGTTC
GCCCTCGCCTTTCACCACGATGGCGGACTGCTTGCGTCTGCTGGTTGCGA
CGCCGCCCTTCGTTTGTGGGACATGCGCTCGGGGCGCGCCGTACGCACTC
TGCCCAACGCGCACGCCGACGCGCTTACGGCCGCGCACTTTGTGCCGCGC
GCCTCGTGGCTCGTGTCCGCGGGAAAGGACCACTGCGTGCGAGTGTGGGA
CGTGCGTACCATGCGCGTGTTGTATACCGTTGCGGCGCACGCTAACGTCG
TCTCCGACCTTGCGCTCGATGAACACGGCCATGTGCTGTTTTCGGCCGGG
TTCGACTGCTGTGTCAAGGCGTGGGCGCTGCAGCGCGAGTGCGCCCTGGT
TGCGTGCTGGCCGCGCTTCGACGACAAGATCCTCGCCCTGGCCTGTCGTC
CCGACGCCTCCCGCGTCGTCGCCGCCTGCTACGACAAGACTTGGCGCCTG
TGGGGCTGCCCCACGCGCCCTCCTCCCCCCGATCACTCTGCCTAG

protein sequence of Gchil3483.t1

>Gchil3483.t1 ID=Gchil3483.t1|Name=Gchil3483.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=465bp
MEGACHAREQQQLVPTDDTAVRAALRRRRHPVCLFGEDAYDRRARLRALY
AAAVAVAAASPPSSPPSSPPSSPPSSSPPSAPPAPRDDGAPATEFYTEGA
PRLRQLRVAVARASLRAAAARLRAERARSGDADAAARWRCRDAVVLEQVR
RAASIASHAAGTRPLSAACYCVTERHGDLVVTADWAGELRVWRQTHGSDA
PATLLATLPLHEGRVSAARFRAGLLTTASADGTAVVCELRDTGFERVATL
VAHRARVTDARVCPVRRSMVATAALDGDLCLWDGDVCVLRQHTGHCGGVF
ALAFHHDGGLLASAGCDAALRLWDMRSGRAVRTLPNAHADALTAAHFVPR
ASWLVSAGKDHCVRVWDVRTMRVLYTVAAHANVVSDLALDEHGHVLFSAG
FDCCVKAWALQRECALVACWPRFDDKILALACRPDASRVVAACYDKTWRL
WGCPTRPPPPDHSA*

mRNA from alignment at tig00004378_pilon:533254..534648+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gchil3483.t1 ID=Gchil3483.t1|Name=Gchil3483.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1395bp|location=Sequence derived from alignment at tig00004378_pilon:533254..534648+ (Gracilaria chilensis NLEC103_M9 male)
ATGGAGGGGGCGTGCCACGCGCGCGAGCAGCAGCAGCTCGTGCCCACTGA
CGACAccgccgtacgcgccgcgctgcgccgccgccgccaccccgTCTGTC
TCTTCGGCGAGGATGCGTACGACCGTCGCGCCCGCCTCCGCgctctctac
gccgccgccgtcgccgtcgccgccgcctcgccgccgtcctcgccgccgtc
ctcgccgccgtcctcgccgccgtcTTCCTCGCCGCCTTCCGCGCCCCCGG
CGCCGCGCGACGACGGCGCGCCCGCGACCGAGTTCTACACCGAGGGCGCG
CCGCGCCTGCGCCAGCTGCGCGTGGCCGTGGCGCGCGCGTCGTTGCGCGC
CGCCGCCGCGCGTCTGCGAGCCGAGCGCGCGCGCAGTGGAGACGCAGACG
CCGCCGCGCGGTGGCGTTGTCGCGATGCCGTCGTGCTGGAACAAGTGCGT
CGCGCCGCGTCCATAGCGTCGCACGCGGCCGGAACACGCCCGCTGTCGGC
CGCGTGCTACTGTGTCACCGAGCGACACGGCGACCTCGTCGTCACCGCCG
ACTGGGCCGGCGAGCTGCGCGTCTGGCGCCAGACACACGGCTCCGACGCC
CCCGCCACGCTGCTCGCCACGCTTCCGCTGCATGAGGGCCGCGTGTCGGC
CGCGCGCTTTCGCGCCGGTCTGCTCACTACTGCGTCGGCTGACGGCACCG
CCGTCGTGTGCGAGCTTCGCGACACTGGCTTTGAGCGAGTTGCCACGCTT
GTGGCACATCGCGCACGCGTGACGGATGCGCGCGTGTGTCCGGTGCGACG
CTCAATGGTTGCAACGGCCGCGCTGGACGGCGACTTGTGTCTGTGGGATG
GCGATGTGTGCGTGTTACGTCAACACACCGGCCATTGTGGCGGCGTGTTC
GCCCTCGCCTTTCACCACGATGGCGGACTGCTTGCGTCTGCTGGTTGCGA
CGCCGCCCTTCGTTTGTGGGACATGCGCTCGGGGCGCGCCGTACGCACTC
TGCCCAACGCGCACGCCGACGCGCTTACGGCCGCGCACTTTGTGCCGCGC
GCCTCGTGGCTCGTGTCCGCGGGAAAGGACCACTGCGTGCGAGTGTGGGA
CGTGCGTACCATGCGCGTGTTGTATACCGTTGCGGCGCACGCTAACGTCG
TCTCCGACCTTGCGCTCGATGAACACGGCCATGTGCTGTTTTCGGCCGGG
TTCGACTGCTGTGTCAAGGCGTGGGCGCTGCAGCGCGAGTGCGCCCTGGT
TGCGTGCTGGCCGCGCTTCGACGACAAGATCCTCGCCCTGGCCTGTCGTC
CCGACGCCTCCCGCGTCGTCGCCGCCTGCTACGACAAGACTTGGCGCCTG
TGGGGCTGCCCCACGCGCCCTCCTCCCCCCGATCACTCTGCCTAG

Coding sequence (CDS) from alignment at tig00004378_pilon:533254..534648+

>Gchil3483.t1 ID=Gchil3483.t1|Name=Gchil3483.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1395bp|location=Sequence derived from alignment at tig00004378_pilon:533254..534648+ (Gracilaria chilensis NLEC103_M9 male)
ATGGAGGGGGCGTGCCACGCGCGCGAGCAGCAGCAGCTCGTGCCCACTGA
CGACAccgccgtacgcgccgcgctgcgccgccgccgccaccccgTCTGTC
TCTTCGGCGAGGATGCGTACGACCGTCGCGCCCGCCTCCGCgctctctac
gccgccgccgtcgccgtcgccgccgcctcgccgccgtcctcgccgccgtc
ctcgccgccgtcctcgccgccgtcTTCCTCGCCGCCTTCCGCGCCCCCGG
CGCCGCGCGACGACGGCGCGCCCGCGACCGAGTTCTACACCGAGGGCGCG
CCGCGCCTGCGCCAGCTGCGCGTGGCCGTGGCGCGCGCGTCGTTGCGCGC
CGCCGCCGCGCGTCTGCGAGCCGAGCGCGCGCGCAGTGGAGACGCAGACG
CCGCCGCGCGGTGGCGTTGTCGCGATGCCGTCGTGCTGGAACAAGTGCGT
CGCGCCGCGTCCATAGCGTCGCACGCGGCCGGAACACGCCCGCTGTCGGC
CGCGTGCTACTGTGTCACCGAGCGACACGGCGACCTCGTCGTCACCGCCG
ACTGGGCCGGCGAGCTGCGCGTCTGGCGCCAGACACACGGCTCCGACGCC
CCCGCCACGCTGCTCGCCACGCTTCCGCTGCATGAGGGCCGCGTGTCGGC
CGCGCGCTTTCGCGCCGGTCTGCTCACTACTGCGTCGGCTGACGGCACCG
CCGTCGTGTGCGAGCTTCGCGACACTGGCTTTGAGCGAGTTGCCACGCTT
GTGGCACATCGCGCACGCGTGACGGATGCGCGCGTGTGTCCGGTGCGACG
CTCAATGGTTGCAACGGCCGCGCTGGACGGCGACTTGTGTCTGTGGGATG
GCGATGTGTGCGTGTTACGTCAACACACCGGCCATTGTGGCGGCGTGTTC
GCCCTCGCCTTTCACCACGATGGCGGACTGCTTGCGTCTGCTGGTTGCGA
CGCCGCCCTTCGTTTGTGGGACATGCGCTCGGGGCGCGCCGTACGCACTC
TGCCCAACGCGCACGCCGACGCGCTTACGGCCGCGCACTTTGTGCCGCGC
GCCTCGTGGCTCGTGTCCGCGGGAAAGGACCACTGCGTGCGAGTGTGGGA
CGTGCGTACCATGCGCGTGTTGTATACCGTTGCGGCGCACGCTAACGTCG
TCTCCGACCTTGCGCTCGATGAACACGGCCATGTGCTGTTTTCGGCCGGG
TTCGACTGCTGTGTCAAGGCGTGGGCGCTGCAGCGCGAGTGCGCCCTGGT
TGCGTGCTGGCCGCGCTTCGACGACAAGATCCTCGCCCTGGCCTGTCGTC
CCGACGCCTCCCGCGTCGTCGCCGCCTGCTACGACAAGACTTGGCGCCTG
TGGGGCTGCCCCACGCGCCCTCCTCCCCCCGATCACTCTGCCTAG