Gchil3477.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil3477.t1
Unique NameGchil3477.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length428
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004378_piloncontigtig00004378_pilon:421227..422510 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog45351.EDO36338
Preferred nameMEPCE
PFAMsBin3,Methyltransf_25,Methyltransf_31
Max annot lvl33208|Metazoa
KEGG koko:K15190
GOsGO:0000122,GO:0001085,GO:0001510,GO:0003674,GO:0003676,GO:0003723,GO:0003824,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0006139,GO:0006325,GO:0006342,GO:0006355,GO:0006357,GO:0006417,GO:0006725,GO:0006807,GO:0006996,GO:0007346,GO:0008134,GO:0008150,GO:0008152,GO:0008168,GO:0008173,GO:0008757,GO:0009451,GO:0009889,GO:0009890,GO:0009892,GO:0009987,GO:0010468,GO:0010556,GO:0010558,GO:0010564,GO:0010605,GO:0010608,GO:0010629,GO:0016043,GO:0016070,GO:0016073,GO:0016458,GO:0016740,GO:0016741,GO:0017069,GO:0017148,GO:0019219,GO:0019222,GO:0031323,GO:0031324,GO:0031326,GO:0031327,GO:0032259,GO:0032268,GO:0032269,GO:0032502,GO:0034248,GO:0034249,GO:0034401,GO:0034641,GO:0034660,GO:0035561,GO:0035562,GO:0040029,GO:0040031,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0043414,GO:0044092,GO:0044237,GO:0044238,GO:0044260,GO:0044424,GO:0044464,GO:0045787,GO:0045814,GO:0045892,GO:0045931,GO:0045934,GO:0046483,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0050789,GO:0050794,GO:0051098,GO:0051100,GO:0051171,GO:0051172,GO:0051246,GO:0051248,GO:0051252,GO:0051253,GO:0051276,GO:0051726,GO:0060255,GO:0065007,GO:0065009,GO:0070828,GO:0070868,GO:0071704,GO:0071840,GO:0080090,GO:0090068,GO:0090304,GO:0097159,GO:0097549,GO:0140098,GO:1900087,GO:1901360,GO:1901363,GO:1901987,GO:1901989,GO:1901990,GO:1901992,GO:1902679,GO:1902806,GO:1902808,GO:1903506,GO:1903507,GO:2000045,GO:2000112,GO:2000113,GO:2001141
Evalue7.54e-36
EggNOG OGsKOG2899@1|root,KOG2899@2759|Eukaryota,39UCR@33154|Opisthokonta,3BFEW@33208|Metazoa
DescriptionsnRNA modification
COG categoryS
BRITEko00000,ko01000,ko03021
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil3477Gchil3477Gracilaria chilensis NLEC103_M9 malegenetig00004378_pilon 421227..422510 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3477.t1.stop1Gchil3477.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004378_pilon 421227..421229 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3477.t1.CDS1Gchil3477.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004378_pilon 421227..422510 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3477.t1.exon1Gchil3477.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004378_pilon 421227..422510 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3477.t1.start1Gchil3477.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004378_pilon 422508..422510 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3477.t1Gchil3477.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004378_pilon 421227..422510 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil3477.t1 ID=Gchil3477.t1|Name=Gchil3477.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=428bp
MTTSPVKADVERGREDPIRRAPPSRKRPRSPSNTSPALPPASKKPRDSSA
PRTAVAQSNTSGVPTKHGSYPNYYNRRLRGNDPSTDDRLPLVRNLCDAYD
RFSVLDLGCNDGKLTMEVARHARCVKALGVDIDGKLIRHARGSLRRHAQQ
QIKANSSGANRSSPHSVSFPFNTAFRVEDLSAEQASESQSLSEQYHVLLC
LSVTKWVHIDGGDHALERLFHRMFNALKPGGVLVLEPQPVKSYKLARQKG
LAPKESSFDNLKLKPSMFSKYLLEHCGFSSVRMLRDKRPSGKAFNRPIFA
FFKGDDAPSLKRFDEVAKPQKIPSEHNGQAGKNIEDKNIEDENIKHNNMK
RKNIKHNNTKHHNIKHNNMNEKDIQDKNIADTANQESNLGDKKNQPNAKV
DEVVVNASVVKPKKKKSKKRQKHATEP*
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spliced messenger RNA

>Gchil3477.t1 ID=Gchil3477.t1|Name=Gchil3477.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1284bp|location=Sequence derived from alignment at tig00004378_pilon:421227..422510- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGACCACCTCCCCCGTCAAAGCCGACGTGGAGCGTGGCCGAGAAGACCC
CATTAGGCGCGCGCCGCCTTCGCGCAAGCGCCCGCGATCGCCGTCCAACA
CCTCACCCGCCCTCCCACCCGCCAGCAAGAAACCACGAGACTCTTCCGCA
CCACGCACCGCTGTCGCGCAGTCGAATACGTCTGGCGTGCCAACCAAGCA
CGGCAGTTACCCCAACTACTACAACCGCCGTCTTCGCGGCAATGATCCCA
GCACAGATGATCGCCTTCCGCTCGTACGAAATTTGTGCGATGCTTACGAC
AGGTTCAGTGTGCTCGATCTGGGATGCAATGACGGCAAGCTCACCATGGA
GGTGGCTCGACATGCTCGCTGCGTTAAGGCACTTGGAGTGGACATTGATG
GAAAGCTAATTCGACACGCTCGCGGTTCTCTTCGACGACATGCTCAGCAG
CAAATCAAGGCCAACAGTTCTGGGGCAAACCGCTCCTCCCCCCATTCTGT
TTCATTTCCTTTCAACACAGCGTTTCGCGTGGAGGATTTGTCGGCTGAGC
AAGCCTCGGAATCACAGTCTCTTTCCGAACAGTACCATGTTCTCCTTTGC
CTCAGCGTGACTAAGTGGGTACATATCGACGGCGGTGACCACGCACTGGA
ACGCTTATTTCATCGCATGTTTAACGCCTTAAAGCCCGGCGGCGTGCTTG
TGCTCGAGCCCCAGCCTGTAAAAAGCTACAAGTTAGCCAGGCAAAAAGGG
TTGGCACCTAAGGAAAGTTCTTTTGATAACTTGAAACTGAAGCCAAGCAT
GTTTTCGAAATATTTACTAGAGCACTGTGGATTCAGTTCTGTTCGCATGT
TGAGAGACAAGCGTCCGTCTGGCAAAGCGTTCAACAGACCCATATTTGCA
TTCTTTAAAGGAGATGATGCACCATCACTAAAACGCTTTGATGAAGTCGC
GAAACCTCAGAAAATTCCATCTGAACATAATGGACAAGCAGGAAAGAACA
TAGAAGACAAGAACATAGAAGACGAGAACATAAAACACAACAACATGAAA
CGCAAGAACATAAAACACAATAACACAAAACACCACAACATAAAACACAA
CAACATGAACGAAAAAGACATACAAGATAAGAACATCGCAGACACCGCCA
ATCAGGAGTCAAATTTGGGCGATAAGAAAAATCAGCCTAACGCAAAAGTT
GACGAAGTAGTCGTGAACGCATCCGTTGTGAAGCCAAAAAAGAAAAAGTC
GAAGAAGCGCCAGAAGCATGCGACCGAACCGTAG
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protein sequence of Gchil3477.t1

>Gchil3477.t1 ID=Gchil3477.t1|Name=Gchil3477.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=428bp
MTTSPVKADVERGREDPIRRAPPSRKRPRSPSNTSPALPPASKKPRDSSA
PRTAVAQSNTSGVPTKHGSYPNYYNRRLRGNDPSTDDRLPLVRNLCDAYD
RFSVLDLGCNDGKLTMEVARHARCVKALGVDIDGKLIRHARGSLRRHAQQ
QIKANSSGANRSSPHSVSFPFNTAFRVEDLSAEQASESQSLSEQYHVLLC
LSVTKWVHIDGGDHALERLFHRMFNALKPGGVLVLEPQPVKSYKLARQKG
LAPKESSFDNLKLKPSMFSKYLLEHCGFSSVRMLRDKRPSGKAFNRPIFA
FFKGDDAPSLKRFDEVAKPQKIPSEHNGQAGKNIEDKNIEDENIKHNNMK
RKNIKHNNTKHHNIKHNNMNEKDIQDKNIADTANQESNLGDKKNQPNAKV
DEVVVNASVVKPKKKKSKKRQKHATEP*
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mRNA from alignment at tig00004378_pilon:421227..422510-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil3477.t1 ID=Gchil3477.t1|Name=Gchil3477.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1284bp|location=Sequence derived from alignment at tig00004378_pilon:421227..422510- (Gracilaria chilensis NLEC103_M9 male)
ATGACCACCTCCCCCGTCAAAGCCGACGTGGAGCGTGGCCGAGAAGACCC
CATTAGGCGCGCGCCGCCTTCGCGCAAGCGCCCGCGATCGCCGTCCAACA
CCTCACCCGCCCTCCCACCCGCCAGCAAGAAACCACGAGACTCTTCCGCA
CCACGCACCGCTGTCGCGCAGTCGAATACGTCTGGCGTGCCAACCAAGCA
CGGCAGTTACCCCAACTACTACAACCGCCGTCTTCGCGGCAATGATCCCA
GCACAGATGATCGCCTTCCGCTCGTACGAAATTTGTGCGATGCTTACGAC
AGGTTCAGTGTGCTCGATCTGGGATGCAATGACGGCAAGCTCACCATGGA
GGTGGCTCGACATGCTCGCTGCGTTAAGGCACTTGGAGTGGACATTGATG
GAAAGCTAATTCGACACGCTCGCGGTTCTCTTCGACGACATGCTCAGCAG
CAAATCAAGGCCAACAGTTCTGGGGCAAACCGCTCCTCCCCCCATTCTGT
TTCATTTCCTTTCAACACAGCGTTTCGCGTGGAGGATTTGTCGGCTGAGC
AAGCCTCGGAATCACAGTCTCTTTCCGAACAGTACCATGTTCTCCTTTGC
CTCAGCGTGACTAAGTGGGTACATATCGACGGCGGTGACCACGCACTGGA
ACGCTTATTTCATCGCATGTTTAACGCCTTAAAGCCCGGCGGCGTGCTTG
TGCTCGAGCCCCAGCCTGTAAAAAGCTACAAGTTAGCCAGGCAAAAAGGG
TTGGCACCTAAGGAAAGTTCTTTTGATAACTTGAAACTGAAGCCAAGCAT
GTTTTCGAAATATTTACTAGAGCACTGTGGATTCAGTTCTGTTCGCATGT
TGAGAGACAAGCGTCCGTCTGGCAAAGCGTTCAACAGACCCATATTTGCA
TTCTTTAAAGGAGATGATGCACCATCACTAAAACGCTTTGATGAAGTCGC
GAAACCTCAGAAAATTCCATCTGAACATAATGGACAAGCAGGAAAGAACA
TAGAAGACAAGAACATAGAAGACGAGAACATAAAACACAACAACATGAAA
CGCAAGAACATAAAACACAATAACACAAAACACCACAACATAAAACACAA
CAACATGAACGAAAAAGACATACAAGATAAGAACATCGCAGACACCGCCA
ATCAGGAGTCAAATTTGGGCGATAAGAAAAATCAGCCTAACGCAAAAGTT
GACGAAGTAGTCGTGAACGCATCCGTTGTGAAGCCAAAAAAGAAAAAGTC
GAAGAAGCGCCAGAAGCATGCGACCGAACCGTAG
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Coding sequence (CDS) from alignment at tig00004378_pilon:421227..422510-

>Gchil3477.t1 ID=Gchil3477.t1|Name=Gchil3477.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1284bp|location=Sequence derived from alignment at tig00004378_pilon:421227..422510- (Gracilaria chilensis NLEC103_M9 male)
ATGACCACCTCCCCCGTCAAAGCCGACGTGGAGCGTGGCCGAGAAGACCC
CATTAGGCGCGCGCCGCCTTCGCGCAAGCGCCCGCGATCGCCGTCCAACA
CCTCACCCGCCCTCCCACCCGCCAGCAAGAAACCACGAGACTCTTCCGCA
CCACGCACCGCTGTCGCGCAGTCGAATACGTCTGGCGTGCCAACCAAGCA
CGGCAGTTACCCCAACTACTACAACCGCCGTCTTCGCGGCAATGATCCCA
GCACAGATGATCGCCTTCCGCTCGTACGAAATTTGTGCGATGCTTACGAC
AGGTTCAGTGTGCTCGATCTGGGATGCAATGACGGCAAGCTCACCATGGA
GGTGGCTCGACATGCTCGCTGCGTTAAGGCACTTGGAGTGGACATTGATG
GAAAGCTAATTCGACACGCTCGCGGTTCTCTTCGACGACATGCTCAGCAG
CAAATCAAGGCCAACAGTTCTGGGGCAAACCGCTCCTCCCCCCATTCTGT
TTCATTTCCTTTCAACACAGCGTTTCGCGTGGAGGATTTGTCGGCTGAGC
AAGCCTCGGAATCACAGTCTCTTTCCGAACAGTACCATGTTCTCCTTTGC
CTCAGCGTGACTAAGTGGGTACATATCGACGGCGGTGACCACGCACTGGA
ACGCTTATTTCATCGCATGTTTAACGCCTTAAAGCCCGGCGGCGTGCTTG
TGCTCGAGCCCCAGCCTGTAAAAAGCTACAAGTTAGCCAGGCAAAAAGGG
TTGGCACCTAAGGAAAGTTCTTTTGATAACTTGAAACTGAAGCCAAGCAT
GTTTTCGAAATATTTACTAGAGCACTGTGGATTCAGTTCTGTTCGCATGT
TGAGAGACAAGCGTCCGTCTGGCAAAGCGTTCAACAGACCCATATTTGCA
TTCTTTAAAGGAGATGATGCACCATCACTAAAACGCTTTGATGAAGTCGC
GAAACCTCAGAAAATTCCATCTGAACATAATGGACAAGCAGGAAAGAACA
TAGAAGACAAGAACATAGAAGACGAGAACATAAAACACAACAACATGAAA
CGCAAGAACATAAAACACAATAACACAAAACACCACAACATAAAACACAA
CAACATGAACGAAAAAGACATACAAGATAAGAACATCGCAGACACCGCCA
ATCAGGAGTCAAATTTGGGCGATAAGAAAAATCAGCCTAACGCAAAAGTT
GACGAAGTAGTCGTGAACGCATCCGTTGTGAAGCCAAAAAAGAAAAAGTC
GAAGAAGCGCCAGAAGCATGCGACCGAACCGTAG
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