Gchil3471.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil3471.t1
Unique NameGchil3471.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length207
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004378_piloncontigtig00004378_pilon:303045..303754 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog1283300.ATXB01000002_gene3188
PFAMsEVE
Max annot lvl135618|Methylococcales
Evalue8.44e-49
EggNOG OGsCOG2947@1|root,COG2947@2|Bacteria,1RHRU@1224|Proteobacteria,1S68X@1236|Gammaproteobacteria,1XEYU@135618|Methylococcales
DescriptionEVE domain
COG categoryS
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil3471Gchil3471Gracilaria chilensis NLEC103_M9 malegenetig00004378_pilon 303045..303754 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3471.t1Gchil3471.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004378_pilon 303045..303754 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3471.t1.start1Gchil3471.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004378_pilon 303045..303047 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3471.t1.CDS1Gchil3471.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004378_pilon 303045..303429 +
Gchil3471.t1.CDS2Gchil3471.t1.CDS2Gracilaria chilensis NLEC103_M9 maleCDStig00004378_pilon 303519..303754 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3471.t1.exon1Gchil3471.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004378_pilon 303045..303429 +
Gchil3471.t1.exon2Gchil3471.t1.exon2Gracilaria chilensis NLEC103_M9 maleexontig00004378_pilon 303519..303754 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3471.t1.intron1Gchil3471.t1.intron1Gracilaria chilensis NLEC103_M9 maleintrontig00004378_pilon 303430..303518 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3471.t1.stop1Gchil3471.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004378_pilon 303752..303754 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil3471.t1 ID=Gchil3471.t1|Name=Gchil3471.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=207bp
MPVTRSVAAKRGSSAQELSPPRAKKRSKRIHDNDAVVDALAPPPTRYFLF
KSESESRLQNGHDMKFSIHDLDAEPRSTAHWDGVRNAEACKCMRDMRKGD
MAFFYHSNTKKSRPSIVGVVRVVSQPYPDHTAFDKHDPHYDPRSKPHAPR
WYMVDVQLVRKFATPITLDQIKAHPKLANMQLVKRPRISVQRVTPEHWHI
VQDITT*
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spliced messenger RNA

>Gchil3471.t1 ID=Gchil3471.t1|Name=Gchil3471.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=621bp|location=Sequence derived from alignment at tig00004378_pilon:303045..303754+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCCGGTCACGCGCTCGGTCGCGGCGAAGCGCGGCAGCAGCGCGCAAGA
GTTATCTCCGCCGCGCGCCAAGAAGCGATCGAAGCGCATACATGACAACG
ACGCCGTCGTCGATGCGCTCGCACCGCCGCCTACGCGCTACTTTCTGTTC
AAGTCCGAGTCGGAGTCCCGACTTCAAAACGGGCATGACATGAAGTTTTC
CATCCACGACCTTGACGCTGAGCCGCGCTCTACCGCGCACTGGGACGGCG
TGCGCAACGCGGAGGCGTGCAAATGCATGCGCGACATGCGTAAGGGAGAT
ATGGCCTTTTTCTACCACTCAAACACCAAGAAAAGCAGACCGTCCATTGT
TGGCGTCGTGCGTGTGGTCTCGCAGCCCTATCCAGACCACACTGCGTTTG
ACAAACACGATCCGCATTATGACCCGCGTAGCAAGCCGCATGCCCCGCGC
TGGTACATGGTCGATGTTCAACTCGTGCGCAAGTTTGCTACCCCAATCAC
ACTAGACCAAATCAAAGCGCACCCCAAGCTGGCCAACATGCAACTTGTCA
AGCGTCCACGCATTTCGGTGCAACGCGTCACTCCGGAACACTGGCACATC
GTCCAAGATATCACCACCTGA
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protein sequence of Gchil3471.t1

>Gchil3471.t1 ID=Gchil3471.t1|Name=Gchil3471.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=207bp
MPVTRSVAAKRGSSAQELSPPRAKKRSKRIHDNDAVVDALAPPPTRYFLF
KSESESRLQNGHDMKFSIHDLDAEPRSTAHWDGVRNAEACKCMRDMRKGD
MAFFYHSNTKKSRPSIVGVVRVVSQPYPDHTAFDKHDPHYDPRSKPHAPR
WYMVDVQLVRKFATPITLDQIKAHPKLANMQLVKRPRISVQRVTPEHWHI
VQDITT*
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mRNA from alignment at tig00004378_pilon:303045..303754+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil3471.t1 ID=Gchil3471.t1|Name=Gchil3471.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=710bp|location=Sequence derived from alignment at tig00004378_pilon:303045..303754+ (Gracilaria chilensis NLEC103_M9 male)
ATGCCGGTCACGCGCTCGGTCGCGGCGAAGCGCGGCAGCAGCGCGCAAGA
GTTATCTCCGCCGCGCGCCAAGAAGCGATCGAAGCGCATACATGACAACG
ACGCCGTCGTCGATGCGCTCGCACCGCCGCCTACGCGCTACTTTCTGTTC
AAGTCCGAGTCGGAGTCCCGACTTCAAAACGGGCATGACATGAAGTTTTC
CATCCACGACCTTGACGCTGAGCCGCGCTCTACCGCGCACTGGGACGGCG
TGCGCAACGCGGAGGCGTGCAAATGCATGCGCGACATGCGTAAGGGAGAT
ATGGCCTTTTTCTACCACTCAAACACCAAGAAAAGCAGACCGTCCATTGT
TGGCGTCGTGCGTGTGGTCTCGCAGCCCTATCCAGGTATGAGCGCTCGTC
ACCGCCTCCTTCACCCGCTCCGGTACCTGTTTGCGCCGCTTTCTGACCCC
GTTCTCTTCCGTGCCTTTCGCCAGACCACACTGCGTTTGACAAACACGAT
CCGCATTATGACCCGCGTAGCAAGCCGCATGCCCCGCGCTGGTACATGGT
CGATGTTCAACTCGTGCGCAAGTTTGCTACCCCAATCACACTAGACCAAA
TCAAAGCGCACCCCAAGCTGGCCAACATGCAACTTGTCAAGCGTCCACGC
ATTTCGGTGCAACGCGTCACTCCGGAACACTGGCACATCGTCCAAGATAT
CACCACCTGA
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Coding sequence (CDS) from alignment at tig00004378_pilon:303045..303754+

>Gchil3471.t1 ID=Gchil3471.t1|Name=Gchil3471.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=621bp|location=Sequence derived from alignment at tig00004378_pilon:303045..303754+ (Gracilaria chilensis NLEC103_M9 male)
ATGCCGGTCACGCGCTCGGTCGCGGCGAAGCGCGGCAGCAGCGCGCAAGA
GTTATCTCCGCCGCGCGCCAAGAAGCGATCGAAGCGCATACATGACAACG
ACGCCGTCGTCGATGCGCTCGCACCGCCGCCTACGCGCTACTTTCTGTTC
AAGTCCGAGTCGGAGTCCCGACTTCAAAACGGGCATGACATGAAGTTTTC
CATCCACGACCTTGACGCTGAGCCGCGCTCTACCGCGCACTGGGACGGCG
TGCGCAACGCGGAGGCGTGCAAATGCATGCGCGACATGCGTAAGGGAGAT
ATGGCCTTTTTCTACCACTCAAACACCAAGAAAAGCAGACCGTCCATTGT
TGGCGTCGTGCGTGTGGTCTCGCAGCCCTATCCAGACCACACTGCGTTTG
ACAAACACGATCCGCATTATGACCCGCGTAGCAAGCCGCATGCCCCGCGC
TGGTACATGGTCGATGTTCAACTCGTGCGCAAGTTTGCTACCCCAATCAC
ACTAGACCAAATCAAAGCGCACCCCAAGCTGGCCAACATGCAACTTGTCA
AGCGTCCACGCATTTCGGTGCAACGCGTCACTCCGGAACACTGGCACATC
GTCCAAGATATCACCACCTGA
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