Gchil3467.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil3467.t1
Unique NameGchil3467.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length359
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004378_piloncontigtig00004378_pilon:297846..298922 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog203124.Tery_3445
PFAMsDUF1818
Max annot lvl1117|Cyanobacteria
Evalue4.07e-09
EggNOG OGs2CK5Z@1|root,316YV@2|Bacteria,1G6Q6@1117|Cyanobacteria,1HBJP@1150|Oscillatoriales
DescriptionDomain of unknown function (DUF1818)
COG categoryS
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil3467Gchil3467Gracilaria chilensis NLEC103_M9 malegenetig00004378_pilon 297846..298922 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3467.t1.stop1Gchil3467.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004378_pilon 297846..297848 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3467.t1.CDS1Gchil3467.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004378_pilon 297846..298922 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3467.t1.exon1Gchil3467.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004378_pilon 297846..298922 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3467.t1.start1Gchil3467.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004378_pilon 298920..298922 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3467.t1Gchil3467.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004378_pilon 297846..298922 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil3467.t1 ID=Gchil3467.t1|Name=Gchil3467.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=359bp
MDVVAFVAPTRVVPSPRPHASRVVASHTTRTRPTTRARWAACAPFDEPRD
PVEAAIAEGAYMRRQLESISETRRKQAERTNDALLNMAAQISAITAKLRA
DAGMPPVADPPAPPNAAAAAAAAASAASAAALDKRGSAPSVVADDDAASA
ADEPYMDPKNFGYESTAGWQVLDANEDLPHNERSLQFRIECDMHGCSLIE
VKGDAPPGPGVRQNFIQAGVGFRVGYDPEAPKSFCAMVGNDHWLVALSYD
EIRHLKRLCLSLQKRMDRIARGEEDPPIKKPAVRRSGDGMFNMRVARAGL
DCSVEHESKLVWVQALGQPAPAKYCIRAIFMERRQSECFWASESVPSLLG
ALNKLGIE*
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spliced messenger RNA

>Gchil3467.t1 ID=Gchil3467.t1|Name=Gchil3467.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1077bp|location=Sequence derived from alignment at tig00004378_pilon:297846..298922- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGACGTCGTCGCCTTCGTCGCGCCCACGCGCGTCGTCCCGTCCCCGCG
TCCTCACGCGTCGCGCGTCGTCGCATCCCACACGACGCGCACGCGTCCCA
CGACGCGCGCGCGATGGGCCGCATGCGCGCCGTTCGACGAGCCGCGCGAC
CCCGTGGAGGCCGCCATCGCAGAGGGCGCGTACATGAGACGTCAGCTGGA
AAGCATCTCCGAGACGCGGCGGAAACAGGCGGAGCGTACCAACGACGCGC
TGCTCAACATGGCTGCGCAGATCTCCGCTATCACGGCCAAGCTGCGCGCC
GACGCGGGCATGCCGCCCGTGGCCGATCCGCCGGCACCGCCCAACGCCGC
CGCCGCCGCCGCCGCCGCCGCTTCCGCTGCTTCCGCCGCCGCGCTCGACA
AGCGCGGCTCGGCGCCGTCGGTGGTGGCTGACGACGACGCCGCCTCGGCG
GCGGATGAACCGTACATGGACCCCAAAAACTTTGGGTACGAGTCCACGGC
CGGGTGGCAGGTGCTTGATGCCAACGAGGATTTGCCACACAACGAGCGCA
GCTTGCAGTTTCGCATTGAGTGCGACATGCACGGATGCTCGCTGATTGAG
GTCAAGGGCGACGCGCCGCCCGGCCCGGGCGTCAGACAGAACTTCATTCA
GGCCGGTGTGGGCTTTCGCGTCGGATATGACCCGGAGGCGCCCAAGAGCT
TCTGCGCCATGGTGGGCAACGACCACTGGCTTGTGGCGCTGTCATACGAC
GAAATTCGTCACTTGAAACGGCTGTGTCTGTCGCTGCAGAAAAGAATGGA
TCGCATTGCGCGCGGCGAGGAGGACCCGCCCATTAAGAAGCCGGCCGTGA
GACGCAGCGGAGACGGCATGTTTAATATGAGAGTGGCTCGCGCGGGGCTT
GACTGCTCGGTGGAGCACGAGTCCAAGCTGGTTTGGGTGCAGGCACTTGG
GCAGCCGGCGCCCGCCAAGTACTGTATTAGGGCTATCTTCATGGAGCGCA
GACAGAGCGAGTGTTTCTGGGCTAGTGAGAGCGTGCCCAGTCTGCTGGGT
GCGTTGAACAAGTTGGGTATTGAGTAG
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protein sequence of Gchil3467.t1

>Gchil3467.t1 ID=Gchil3467.t1|Name=Gchil3467.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=359bp
MDVVAFVAPTRVVPSPRPHASRVVASHTTRTRPTTRARWAACAPFDEPRD
PVEAAIAEGAYMRRQLESISETRRKQAERTNDALLNMAAQISAITAKLRA
DAGMPPVADPPAPPNAAAAAAAAASAASAAALDKRGSAPSVVADDDAASA
ADEPYMDPKNFGYESTAGWQVLDANEDLPHNERSLQFRIECDMHGCSLIE
VKGDAPPGPGVRQNFIQAGVGFRVGYDPEAPKSFCAMVGNDHWLVALSYD
EIRHLKRLCLSLQKRMDRIARGEEDPPIKKPAVRRSGDGMFNMRVARAGL
DCSVEHESKLVWVQALGQPAPAKYCIRAIFMERRQSECFWASESVPSLLG
ALNKLGIE*
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mRNA from alignment at tig00004378_pilon:297846..298922-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil3467.t1 ID=Gchil3467.t1|Name=Gchil3467.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1077bp|location=Sequence derived from alignment at tig00004378_pilon:297846..298922- (Gracilaria chilensis NLEC103_M9 male)
ATGGACGTCGTCGCCTTCGTCGCGCCCACGCGCGTCGTCCCGTCCCCGCG
TCCTCACGCGTCGCGCGTCGTCGCATCCCACACGACGCGCACGCGTCCCA
CGACGCGCGCGCGATGGGCCGCATGCGCGCCGTTCGACGAGCCGCGCGAC
CCCGTGGAGGCCGCCATCGCAGAGGGCGCGTACATGAGACGTCAGCTGGA
AAGCATCTCCGAGACGCGGCGGAAACAGGCGGAGCGTACCAACGACGCGC
TGCTCAACATGGCTGCGCAGATCTCCGCTATCACGGCCAAGCTGCGCGCC
GACGCGGGCATGCCGCCCGTGGCCGATCCGCCGGCACCGCCCAACGCCGC
CGCCGCCGCCGCCGCCGCCGCTTCCGCTGCTTCCGCCGCCGCGCTCGACA
AGCGCGGCTCGGCGCCGTCGGTGGTGGCTGACGACGACGCCGCCTCGGCG
GCGGATGAACCGTACATGGACCCCAAAAACTTTGGGTACGAGTCCACGGC
CGGGTGGCAGGTGCTTGATGCCAACGAGGATTTGCCACACAACGAGCGCA
GCTTGCAGTTTCGCATTGAGTGCGACATGCACGGATGCTCGCTGATTGAG
GTCAAGGGCGACGCGCCGCCCGGCCCGGGCGTCAGACAGAACTTCATTCA
GGCCGGTGTGGGCTTTCGCGTCGGATATGACCCGGAGGCGCCCAAGAGCT
TCTGCGCCATGGTGGGCAACGACCACTGGCTTGTGGCGCTGTCATACGAC
GAAATTCGTCACTTGAAACGGCTGTGTCTGTCGCTGCAGAAAAGAATGGA
TCGCATTGCGCGCGGCGAGGAGGACCCGCCCATTAAGAAGCCGGCCGTGA
GACGCAGCGGAGACGGCATGTTTAATATGAGAGTGGCTCGCGCGGGGCTT
GACTGCTCGGTGGAGCACGAGTCCAAGCTGGTTTGGGTGCAGGCACTTGG
GCAGCCGGCGCCCGCCAAGTACTGTATTAGGGCTATCTTCATGGAGCGCA
GACAGAGCGAGTGTTTCTGGGCTAGTGAGAGCGTGCCCAGTCTGCTGGGT
GCGTTGAACAAGTTGGGTATTGAGTAG
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Coding sequence (CDS) from alignment at tig00004378_pilon:297846..298922-

>Gchil3467.t1 ID=Gchil3467.t1|Name=Gchil3467.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1077bp|location=Sequence derived from alignment at tig00004378_pilon:297846..298922- (Gracilaria chilensis NLEC103_M9 male)
ATGGACGTCGTCGCCTTCGTCGCGCCCACGCGCGTCGTCCCGTCCCCGCG
TCCTCACGCGTCGCGCGTCGTCGCATCCCACACGACGCGCACGCGTCCCA
CGACGCGCGCGCGATGGGCCGCATGCGCGCCGTTCGACGAGCCGCGCGAC
CCCGTGGAGGCCGCCATCGCAGAGGGCGCGTACATGAGACGTCAGCTGGA
AAGCATCTCCGAGACGCGGCGGAAACAGGCGGAGCGTACCAACGACGCGC
TGCTCAACATGGCTGCGCAGATCTCCGCTATCACGGCCAAGCTGCGCGCC
GACGCGGGCATGCCGCCCGTGGCCGATCCGCCGGCACCGCCCAACGCCGC
CGCCGCCGCCGCCGCCGCCGCTTCCGCTGCTTCCGCCGCCGCGCTCGACA
AGCGCGGCTCGGCGCCGTCGGTGGTGGCTGACGACGACGCCGCCTCGGCG
GCGGATGAACCGTACATGGACCCCAAAAACTTTGGGTACGAGTCCACGGC
CGGGTGGCAGGTGCTTGATGCCAACGAGGATTTGCCACACAACGAGCGCA
GCTTGCAGTTTCGCATTGAGTGCGACATGCACGGATGCTCGCTGATTGAG
GTCAAGGGCGACGCGCCGCCCGGCCCGGGCGTCAGACAGAACTTCATTCA
GGCCGGTGTGGGCTTTCGCGTCGGATATGACCCGGAGGCGCCCAAGAGCT
TCTGCGCCATGGTGGGCAACGACCACTGGCTTGTGGCGCTGTCATACGAC
GAAATTCGTCACTTGAAACGGCTGTGTCTGTCGCTGCAGAAAAGAATGGA
TCGCATTGCGCGCGGCGAGGAGGACCCGCCCATTAAGAAGCCGGCCGTGA
GACGCAGCGGAGACGGCATGTTTAATATGAGAGTGGCTCGCGCGGGGCTT
GACTGCTCGGTGGAGCACGAGTCCAAGCTGGTTTGGGTGCAGGCACTTGG
GCAGCCGGCGCCCGCCAAGTACTGTATTAGGGCTATCTTCATGGAGCGCA
GACAGAGCGAGTGTTTCTGGGCTAGTGAGAGCGTGCCCAGTCTGCTGGGT
GCGTTGAACAAGTTGGGTATTGAGTAG
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