Gchil3462.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gchil3462.t1
Unique Name	Gchil3462.t1
Type	mRNA
Organism	Gracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length	486

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00004378_pilon	contig	tig00004378_pilon:253020..254477 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria chilensis NLEC103_M9 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	130081.XP_005705071.1
Preferred name	TADA2A
PFAMs	Myb_DNA-binding,SWIRM
Max annot lvl	2759\|Eukaryota
KEGG rclass	RC02795
KEGG ko	ko:K03012,ko:K10391,ko:K11314
KEGG Reaction	R00435,R00441,R00442,R00443
KEGG Pathway	ko00230,ko00240,ko01100,ko03020,ko05016,ko05169,map00230,map00240,map01100,map03020,map05016,map05169
KEGG Module	M00180
GOs	GO:0000123,GO:0000125,GO:0000278,GO:0000785,GO:0000981,GO:0001932,GO:0003674,GO:0003682,GO:0003700,GO:0003712,GO:0003713,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005671,GO:0005694,GO:0005819,GO:0005856,GO:0006139,GO:0006325,GO:0006338,GO:0006351,GO:0006355,GO:0006357,GO:0006366,GO:0006464,GO:0006473,GO:0006475,GO:0006725,GO:0006807,GO:0006996,GO:0007049,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009299,GO:0009889,GO:0009891,GO:0009893,GO:0009987,GO:0010467,GO:0010468,GO:0010556,GO:0010557,GO:0010604,GO:0010638,GO:0015630,GO:0016043,GO:0016070,GO:0016071,GO:0016569,GO:0016570,GO:0016573,GO:0018130,GO:0018193,GO:0018205,GO:0018393,GO:0018394,GO:0019219,GO:0019220,GO:0019222,GO:0019438,GO:0019538,GO:0031056,GO:0031058,GO:0031063,GO:0031248,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0031399,GO:0031401,GO:0031647,GO:0031974,GO:0031981,GO:0032268,GO:0032270,GO:0032774,GO:0032991,GO:0033043,GO:0033044,GO:0034641,GO:0034645,GO:0034654,GO:0035065,GO:0035066,GO:0035327,GO:0036211,GO:0042325,GO:0042789,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043412,GO:0043543,GO:0043966,GO:0043967,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044430,GO:0044446,GO:0044451,GO:0044464,GO:0045935,GO:0046483,GO:0048518,GO:0048522,GO:0050789,GO:0050794,GO:0051128,GO:0051130,GO:0051171,GO:0051173,GO:0051174,GO:0051246,GO:0051247,GO:0051252,GO:0051254,GO:0051276,GO:0060255,GO:0065007,GO:0065008,GO:0070013,GO:0070461,GO:0071704,GO:0071840,GO:0072686,GO:0080090,GO:0090043,GO:0090304,GO:0090311,GO:0097659,GO:0140110,GO:1901360,GO:1901362,GO:1901564,GO:1901576,GO:1901983,GO:1901985,GO:1902275,GO:1902493,GO:1902494,GO:1902562,GO:1902680,GO:1903506,GO:1903508,GO:1905269,GO:1990234,GO:2000112,GO:2000756,GO:2000758,GO:2001141,GO:2001252
Evalue	3.85e-93
EggNOG OGs	COG5114@1\|root,KOG0457@2759\|Eukaryota
Description	positive regulation of histone acetylation
COG category	B
BRITE	br01611,ko00000,ko00001,ko00002,ko03021,ko03036,ko03400,ko04812

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gchil3462	Gchil3462	Gracilaria chilensis NLEC103_M9 male	gene	tig00004378_pilon 253020..254477 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil3462.t1.stop1	Gchil3462.t1.stop1	Gracilaria chilensis NLEC103_M9 male	stop_codon	tig00004378_pilon 253020..253022 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil3462.t1.CDS1	Gchil3462.t1.CDS1	Gracilaria chilensis NLEC103_M9 male	CDS	tig00004378_pilon 253020..254477 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil3462.t1.exon1	Gchil3462.t1.exon1	Gracilaria chilensis NLEC103_M9 male	exon	tig00004378_pilon 253020..254477 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil3462.t1.start1	Gchil3462.t1.start1	Gracilaria chilensis NLEC103_M9 male	start_codon	tig00004378_pilon 254475..254477 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil3462.t1	Gchil3462.t1	Gracilaria chilensis NLEC103_M9 male	polypeptide	tig00004378_pilon 253020..254477 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00004378_pilon:253020..254477-
coding sequence from alignment at tig00004378_pilon:253020..254477-

mRNA sequence

>Gchil3462.t1 ID=Gchil3462.t1|Name=Gchil3462.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=486bp
MAGGSKARPKRARAKSEKKEEPENTSRFHCDYCGRDLSFAVRARCAVCPD
YDSCLDCFSVGAALKPHRPEHAYRLIQVVHTAIFQEGWSADEEEKLLEGL
EMYGVGNWEQVANQISSKNAAETEQHYMRVFLKSSTAPLPDPAKLLPDEK
PAVEKSDEIDPKCLRVMHKHQQEDAAGWMPKRQDFVYEWDNEAEEIIGDM
ELVEDDSKTEREIKSQVLEIYSKKLDERDKRKKFVLERGMTSFKDFLNAE
KKRPKEERELRDKLRVFMRFMSQGEVEKLVDGIMEERKLRAKIDMMKEGL
AHGATSLEEAQRITQNISKSRNRNASQTEPSSLSDHTSSQRRPRRSNGET
SHSEATSLPNGQPTTPSSASDSKERKNFVLGEVDLEKMAGAELLSRTELS
LCGTLKVTPHQYLIIKEVMIRENARTGCLRKKDAKAIIDLDAIKVCKIYD
YFVACGWVRSGPNATSMMVRNTPAPHAATPNGSKA*

spliced messenger RNA

>Gchil3462.t1 ID=Gchil3462.t1|Name=Gchil3462.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1458bp|location=Sequence derived from alignment at tig00004378_pilon:253020..254477- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCAGGCGGAAGTAAAGCTCGTCCGAAGCGTGCACGCGCTAAGAGCGA
GAAGAAAGAGGAACCGGAGAACACGTCCCGCTTTCATTGTGATTACTGCG
GTCGCGACCTCTCTTTTGCCGTTCGTGCACGATGCGCCGTCTGCCCAGAC
TACGATTCATGCCTGGACTGTTTCAGCGTGGGCGCCGCTCTCAAGCCTCA
TAGACCGGAACATGCTTACCGTCTCATTCAAGTAGTACATACGGCCATAT
TTCAGGAGGGCTGGAGTGCAGATGAAGAAGAAAAACTTTTGGAAGGCTTG
GAAATGTATGGAGTCGGAAACTGGGAGCAGGTTGCAAATCAAATCAGTTC
GAAGAACGCAGCAGAAACGGAACAGCATTACATGAGAGTCTTTTTAAAAT
CTTCAACGGCGCCATTACCGGACCCAGCGAAGCTATTACCTGACGAAAAG
CCGGCTGTTGAAAAGAGCGATGAAATAGATCCCAAATGCTTGCGAGTCAT
GCATAAACATCAGCAAGAAGATGCGGCTGGATGGATGCCAAAGCGTCAAG
ATTTTGTTTACGAGTGGGACAATGAGGCAGAAGAGATCATTGGGGACATG
GAATTGGTCGAAGATGATTCCAAGACTGAACGGGAAATCAAGTCACAGGT
CCTTGAGATTTACTCTAAGAAATTGGACGAAAGAGATAAACGCAAGAAAT
TTGTCTTAGAGCGAGGAATGACAAGCTTCAAGGATTTCCTTAACGCAGAA
AAGAAGCGCCCGAAAGAAGAACGTGAATTAAGAGACAAGCTCCGAGTGTT
TATGCGTTTCATGTCACAAGGTGAAGTTGAGAAACTTGTTGACGGGATTA
TGGAAGAACGCAAACTGAGGGCAAAGATAGATATGATGAAAGAAGGTTTG
GCACATGGTGCCACATCGCTCGAGGAAGCCCAGCGAATCACTCAAAATAT
ATCGAAGAGTAGGAATCGCAACGCTTCCCAGACCGAACCATCTTCGCTTT
CCGACCATACATCAAGTCAGCGAAGACCGCGGCGTAGTAATGGGGAAACT
AGTCATTCTGAGGCCACATCCCTTCCAAACGGGCAGCCAACAACGCCTTC
ATCGGCTTCTGATTCCAAAGAAAGAAAGAATTTTGTTCTTGGCGAGGTTG
ATTTGGAAAAGATGGCTGGAGCAGAACTGCTGTCGAGGACTGAGCTTTCT
CTTTGCGGAACTTTGAAAGTAACTCCACATCAATACCTGATAATCAAGGA
AGTAATGATTCGAGAAAATGCACGAACAGGATGCTTGCGTAAGAAAGACG
CCAAAGCAATTATTGATTTGGATGCGATCAAGGTCTGCAAGATATATGAC
TATTTCGTAGCTTGTGGCTGGGTTCGCTCTGGACCAAATGCTACATCCAT
GATGGTCCGCAATACACCAGCACCACATGCAGCCACTCCAAATGGGTCGA
AGGCGTAA

protein sequence of Gchil3462.t1

>Gchil3462.t1 ID=Gchil3462.t1|Name=Gchil3462.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=486bp
MAGGSKARPKRARAKSEKKEEPENTSRFHCDYCGRDLSFAVRARCAVCPD
YDSCLDCFSVGAALKPHRPEHAYRLIQVVHTAIFQEGWSADEEEKLLEGL
EMYGVGNWEQVANQISSKNAAETEQHYMRVFLKSSTAPLPDPAKLLPDEK
PAVEKSDEIDPKCLRVMHKHQQEDAAGWMPKRQDFVYEWDNEAEEIIGDM
ELVEDDSKTEREIKSQVLEIYSKKLDERDKRKKFVLERGMTSFKDFLNAE
KKRPKEERELRDKLRVFMRFMSQGEVEKLVDGIMEERKLRAKIDMMKEGL
AHGATSLEEAQRITQNISKSRNRNASQTEPSSLSDHTSSQRRPRRSNGET
SHSEATSLPNGQPTTPSSASDSKERKNFVLGEVDLEKMAGAELLSRTELS
LCGTLKVTPHQYLIIKEVMIRENARTGCLRKKDAKAIIDLDAIKVCKIYD
YFVACGWVRSGPNATSMMVRNTPAPHAATPNGSKA*

mRNA from alignment at tig00004378_pilon:253020..254477-

Legend: polypeptideCDSexonstart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gchil3462.t1 ID=Gchil3462.t1|Name=Gchil3462.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1458bp|location=Sequence derived from alignment at tig00004378_pilon:253020..254477- (Gracilaria chilensis NLEC103_M9 male)
ATGGCAGGCGGAAGTAAAGCTCGTCCGAAGCGTGCACGCGCTAAGAGCGA
GAAGAAAGAGGAACCGGAGAACACGTCCCGCTTTCATTGTGATTACTGCG
GTCGCGACCTCTCTTTTGCCGTTCGTGCACGATGCGCCGTCTGCCCAGAC
TACGATTCATGCCTGGACTGTTTCAGCGTGGGCGCCGCTCTCAAGCCTCA
TAGACCGGAACATGCTTACCGTCTCATTCAAGTAGTACATACGGCCATAT
TTCAGGAGGGCTGGAGTGCAGATGAAGAAGAAAAACTTTTGGAAGGCTTG
GAAATGTATGGAGTCGGAAACTGGGAGCAGGTTGCAAATCAAATCAGTTC
GAAGAACGCAGCAGAAACGGAACAGCATTACATGAGAGTCTTTTTAAAAT
CTTCAACGGCGCCATTACCGGACCCAGCGAAGCTATTACCTGACGAAAAG
CCGGCTGTTGAAAAGAGCGATGAAATAGATCCCAAATGCTTGCGAGTCAT
GCATAAACATCAGCAAGAAGATGCGGCTGGATGGATGCCAAAGCGTCAAG
ATTTTGTTTACGAGTGGGACAATGAGGCAGAAGAGATCATTGGGGACATG
GAATTGGTCGAAGATGATTCCAAGACTGAACGGGAAATCAAGTCACAGGT
CCTTGAGATTTACTCTAAGAAATTGGACGAAAGAGATAAACGCAAGAAAT
TTGTCTTAGAGCGAGGAATGACAAGCTTCAAGGATTTCCTTAACGCAGAA
AAGAAGCGCCCGAAAGAAGAACGTGAATTAAGAGACAAGCTCCGAGTGTT
TATGCGTTTCATGTCACAAGGTGAAGTTGAGAAACTTGTTGACGGGATTA
TGGAAGAACGCAAACTGAGGGCAAAGATAGATATGATGAAAGAAGGTTTG
GCACATGGTGCCACATCGCTCGAGGAAGCCCAGCGAATCACTCAAAATAT
ATCGAAGAGTAGGAATCGCAACGCTTCCCAGACCGAACCATCTTCGCTTT
CCGACCATACATCAAGTCAGCGAAGACCGCGGCGTAGTAATGGGGAAACT
AGTCATTCTGAGGCCACATCCCTTCCAAACGGGCAGCCAACAACGCCTTC
ATCGGCTTCTGATTCCAAAGAAAGAAAGAATTTTGTTCTTGGCGAGGTTG
ATTTGGAAAAGATGGCTGGAGCAGAACTGCTGTCGAGGACTGAGCTTTCT
CTTTGCGGAACTTTGAAAGTAACTCCACATCAATACCTGATAATCAAGGA
AGTAATGATTCGAGAAAATGCACGAACAGGATGCTTGCGTAAGAAAGACG
CCAAAGCAATTATTGATTTGGATGCGATCAAGGTCTGCAAGATATATGAC
TATTTCGTAGCTTGTGGCTGGGTTCGCTCTGGACCAAATGCTACATCCAT
GATGGTCCGCAATACACCAGCACCACATGCAGCCACTCCAAATGGGTCGA
AGGCGTAA

Coding sequence (CDS) from alignment at tig00004378_pilon:253020..254477-

>Gchil3462.t1 ID=Gchil3462.t1|Name=Gchil3462.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1458bp|location=Sequence derived from alignment at tig00004378_pilon:253020..254477- (Gracilaria chilensis NLEC103_M9 male)
ATGGCAGGCGGAAGTAAAGCTCGTCCGAAGCGTGCACGCGCTAAGAGCGA
GAAGAAAGAGGAACCGGAGAACACGTCCCGCTTTCATTGTGATTACTGCG
GTCGCGACCTCTCTTTTGCCGTTCGTGCACGATGCGCCGTCTGCCCAGAC
TACGATTCATGCCTGGACTGTTTCAGCGTGGGCGCCGCTCTCAAGCCTCA
TAGACCGGAACATGCTTACCGTCTCATTCAAGTAGTACATACGGCCATAT
TTCAGGAGGGCTGGAGTGCAGATGAAGAAGAAAAACTTTTGGAAGGCTTG
GAAATGTATGGAGTCGGAAACTGGGAGCAGGTTGCAAATCAAATCAGTTC
GAAGAACGCAGCAGAAACGGAACAGCATTACATGAGAGTCTTTTTAAAAT
CTTCAACGGCGCCATTACCGGACCCAGCGAAGCTATTACCTGACGAAAAG
CCGGCTGTTGAAAAGAGCGATGAAATAGATCCCAAATGCTTGCGAGTCAT
GCATAAACATCAGCAAGAAGATGCGGCTGGATGGATGCCAAAGCGTCAAG
ATTTTGTTTACGAGTGGGACAATGAGGCAGAAGAGATCATTGGGGACATG
GAATTGGTCGAAGATGATTCCAAGACTGAACGGGAAATCAAGTCACAGGT
CCTTGAGATTTACTCTAAGAAATTGGACGAAAGAGATAAACGCAAGAAAT
TTGTCTTAGAGCGAGGAATGACAAGCTTCAAGGATTTCCTTAACGCAGAA
AAGAAGCGCCCGAAAGAAGAACGTGAATTAAGAGACAAGCTCCGAGTGTT
TATGCGTTTCATGTCACAAGGTGAAGTTGAGAAACTTGTTGACGGGATTA
TGGAAGAACGCAAACTGAGGGCAAAGATAGATATGATGAAAGAAGGTTTG
GCACATGGTGCCACATCGCTCGAGGAAGCCCAGCGAATCACTCAAAATAT
ATCGAAGAGTAGGAATCGCAACGCTTCCCAGACCGAACCATCTTCGCTTT
CCGACCATACATCAAGTCAGCGAAGACCGCGGCGTAGTAATGGGGAAACT
AGTCATTCTGAGGCCACATCCCTTCCAAACGGGCAGCCAACAACGCCTTC
ATCGGCTTCTGATTCCAAAGAAAGAAAGAATTTTGTTCTTGGCGAGGTTG
ATTTGGAAAAGATGGCTGGAGCAGAACTGCTGTCGAGGACTGAGCTTTCT
CTTTGCGGAACTTTGAAAGTAACTCCACATCAATACCTGATAATCAAGGA
AGTAATGATTCGAGAAAATGCACGAACAGGATGCTTGCGTAAGAAAGACG
CCAAAGCAATTATTGATTTGGATGCGATCAAGGTCTGCAAGATATATGAC
TATTTCGTAGCTTGTGGCTGGGTTCGCTCTGGACCAAATGCTACATCCAT
GATGGTCCGCAATACACCAGCACCACATGCAGCCACTCCAAATGGGTCGA
AGGCGTAA