Gchil3460.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil3460.t1
Unique NameGchil3460.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length511
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004378_piloncontigtig00004378_pilon:247885..249417 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005703263.1
Preferred nameOEP80
PFAMsBac_surface_Ag,POTRA
Max annot lvl2759|Eukaryota
KEGG koko:K07277
KEGG TC1.B.33
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0006996,GO:0008150,GO:0009507,GO:0009526,GO:0009536,GO:0009657,GO:0009658,GO:0009941,GO:0009987,GO:0016020,GO:0016043,GO:0031967,GO:0031975,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044422,GO:0044424,GO:0044434,GO:0044435,GO:0044444,GO:0044446,GO:0044464,GO:0071840
Evalue5.27e-27
EggNOG OGsCOG4775@1|root,2QSQ3@2759|Eukaryota
Descriptionchloroplast organization
COG categoryM
BRITEko00000,ko02000,ko03029
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil3460Gchil3460Gracilaria chilensis NLEC103_M9 malegenetig00004378_pilon 247885..249417 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3460.t1.stop1Gchil3460.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004378_pilon 247885..247887 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3460.t1.CDS1Gchil3460.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004378_pilon 247885..249417 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3460.t1.exon1Gchil3460.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004378_pilon 247885..249417 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3460.t1.start1Gchil3460.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004378_pilon 249415..249417 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3460.t1Gchil3460.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004378_pilon 247885..249417 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil3460.t1 ID=Gchil3460.t1|Name=Gchil3460.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=511bp
MEGRRVRGKELRERIARANKWYSDNAYVCSRMLVIQVPGLFHNTLTVFCS
EPSLNQVKIIPVDKDDKPEAGTHIKTRLRTICNALGVQIGEVFMWKPEGF
GSLMALGIFDYADAEVSILSDESVQLRLYLREKPSGKIEPGAGMSTDGRV
FGDISVSDNNFMGRAQRLRVAWQKRIDEGRSSGGILFEDMRIGANIPLSF
KFKAYRDSSSKRGIPVNRSASEQRTHVHPRRDNRDFDSQLFYEKDRDGIM
VDIGFRPKDTFMMYNLTPKFEIIHPNLVDSLSASTTSQMVLQNSFTHATR
LPVELPRHGHIFRIEHSVGNVLRSSNRPFQKALLSASQYFGMKRYASVAI
AGSIGLGSENLPWHEQKSLGGHTNVRGYSYGELGRHKSYATARAELRVPL
THLEATAGPSLPADEEQKEPSEKVDGKKKSDNNEKKDDESNKLSGIDSKL
PPLVGVLFGDIALENSANREILGTSYGVGLRVAGIVSIDWTRTVEEGRSS
VHVGLVDRSW*
back to top

spliced messenger RNA

>Gchil3460.t1 ID=Gchil3460.t1|Name=Gchil3460.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1533bp|location=Sequence derived from alignment at tig00004378_pilon:247885..249417- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGAGGGCCGTCGAGTCCGAGGCAAGGAGCTCAGAGAAAGAATCGCCCG
AGCCAACAAGTGGTACTCAGACAATGCATACGTCTGCTCCAGGATGCTGG
TTATACAGGTTCCTGGCCTGTTCCATAACACCCTTACTGTGTTCTGCTCA
GAACCCTCTCTCAACCAGGTAAAGATCATTCCCGTTGACAAAGATGACAA
GCCGGAGGCGGGTACTCACATCAAGACGCGTCTTCGCACCATATGCAACG
CCCTCGGCGTGCAAATTGGCGAAGTCTTCATGTGGAAGCCAGAGGGATTC
GGCTCTCTTATGGCTCTAGGCATCTTTGACTATGCTGATGCTGAGGTGAG
CATACTTTCCGACGAAAGCGTCCAGCTCCGTTTGTATCTCCGCGAAAAGC
CAAGCGGGAAAATAGAGCCAGGTGCTGGTATGTCTACAGATGGTCGAGTC
TTTGGCGATATCAGTGTATCGGACAACAATTTCATGGGCCGTGCTCAACG
ACTACGCGTCGCTTGGCAAAAGAGAATTGACGAAGGGCGCTCATCGGGCG
GTATCCTTTTCGAAGACATGAGAATAGGAGCAAACATTCCCCTTTCTTTC
AAGTTCAAAGCGTACCGTGATTCCAGTTCAAAGCGTGGCATTCCTGTTAA
TCGCTCGGCGAGCGAACAGCGCACACATGTCCACCCCCGTAGAGATAACC
GTGATTTTGATTCGCAGCTTTTCTACGAAAAGGACAGAGACGGTATCATG
GTAGACATCGGGTTTCGTCCGAAGGACACCTTTATGATGTACAATTTAAC
CCCCAAGTTCGAGATCATTCATCCTAATCTAGTTGACTCCTTGAGTGCTT
CTACCACGTCGCAAATGGTACTGCAAAATTCATTTACGCACGCTACGAGA
CTACCGGTGGAACTCCCGCGTCATGGTCATATTTTTAGAATCGAACATAG
TGTCGGCAATGTGCTCCGGTCTTCAAATCGCCCGTTTCAGAAAGCATTAC
TTTCAGCGAGTCAGTACTTCGGTATGAAGCGCTACGCCTCTGTTGCAATT
GCCGGCAGCATAGGGTTAGGGTCAGAGAATCTGCCCTGGCACGAACAGAA
ATCTCTTGGCGGCCATACCAACGTCAGAGGATACTCTTACGGAGAACTTG
GAAGACATAAATCGTATGCTACCGCTCGCGCAGAACTACGTGTTCCTCTC
ACGCACTTGGAGGCGACAGCTGGTCCAAGCCTCCCTGCGGATGAAGAACA
GAAGGAGCCTAGCGAAAAAGTGGATGGGAAAAAGAAGAGCGATAACAACG
AAAAGAAAGACGACGAGTCTAATAAGTTGTCAGGCATTGATAGCAAGTTG
CCACCGCTTGTTGGAGTTTTATTTGGGGACATTGCACTAGAAAATTCCGC
TAATCGGGAAATTCTAGGCACGAGTTATGGAGTCGGGCTTCGCGTTGCAG
GCATTGTGTCCATAGACTGGACAAGAACAGTTGAGGAAGGGCGATCTAGC
GTTCACGTAGGGCTTGTAGATCGCAGTTGGTAA
back to top

protein sequence of Gchil3460.t1

>Gchil3460.t1 ID=Gchil3460.t1|Name=Gchil3460.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=511bp
MEGRRVRGKELRERIARANKWYSDNAYVCSRMLVIQVPGLFHNTLTVFCS
EPSLNQVKIIPVDKDDKPEAGTHIKTRLRTICNALGVQIGEVFMWKPEGF
GSLMALGIFDYADAEVSILSDESVQLRLYLREKPSGKIEPGAGMSTDGRV
FGDISVSDNNFMGRAQRLRVAWQKRIDEGRSSGGILFEDMRIGANIPLSF
KFKAYRDSSSKRGIPVNRSASEQRTHVHPRRDNRDFDSQLFYEKDRDGIM
VDIGFRPKDTFMMYNLTPKFEIIHPNLVDSLSASTTSQMVLQNSFTHATR
LPVELPRHGHIFRIEHSVGNVLRSSNRPFQKALLSASQYFGMKRYASVAI
AGSIGLGSENLPWHEQKSLGGHTNVRGYSYGELGRHKSYATARAELRVPL
THLEATAGPSLPADEEQKEPSEKVDGKKKSDNNEKKDDESNKLSGIDSKL
PPLVGVLFGDIALENSANREILGTSYGVGLRVAGIVSIDWTRTVEEGRSS
VHVGLVDRSW*
back to top

mRNA from alignment at tig00004378_pilon:247885..249417-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil3460.t1 ID=Gchil3460.t1|Name=Gchil3460.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1533bp|location=Sequence derived from alignment at tig00004378_pilon:247885..249417- (Gracilaria chilensis NLEC103_M9 male)
ATGGAGGGCCGTCGAGTCCGAGGCAAGGAGCTCAGAGAAAGAATCGCCCG
AGCCAACAAGTGGTACTCAGACAATGCATACGTCTGCTCCAGGATGCTGG
TTATACAGGTTCCTGGCCTGTTCCATAACACCCTTACTGTGTTCTGCTCA
GAACCCTCTCTCAACCAGGTAAAGATCATTCCCGTTGACAAAGATGACAA
GCCGGAGGCGGGTACTCACATCAAGACGCGTCTTCGCACCATATGCAACG
CCCTCGGCGTGCAAATTGGCGAAGTCTTCATGTGGAAGCCAGAGGGATTC
GGCTCTCTTATGGCTCTAGGCATCTTTGACTATGCTGATGCTGAGGTGAG
CATACTTTCCGACGAAAGCGTCCAGCTCCGTTTGTATCTCCGCGAAAAGC
CAAGCGGGAAAATAGAGCCAGGTGCTGGTATGTCTACAGATGGTCGAGTC
TTTGGCGATATCAGTGTATCGGACAACAATTTCATGGGCCGTGCTCAACG
ACTACGCGTCGCTTGGCAAAAGAGAATTGACGAAGGGCGCTCATCGGGCG
GTATCCTTTTCGAAGACATGAGAATAGGAGCAAACATTCCCCTTTCTTTC
AAGTTCAAAGCGTACCGTGATTCCAGTTCAAAGCGTGGCATTCCTGTTAA
TCGCTCGGCGAGCGAACAGCGCACACATGTCCACCCCCGTAGAGATAACC
GTGATTTTGATTCGCAGCTTTTCTACGAAAAGGACAGAGACGGTATCATG
GTAGACATCGGGTTTCGTCCGAAGGACACCTTTATGATGTACAATTTAAC
CCCCAAGTTCGAGATCATTCATCCTAATCTAGTTGACTCCTTGAGTGCTT
CTACCACGTCGCAAATGGTACTGCAAAATTCATTTACGCACGCTACGAGA
CTACCGGTGGAACTCCCGCGTCATGGTCATATTTTTAGAATCGAACATAG
TGTCGGCAATGTGCTCCGGTCTTCAAATCGCCCGTTTCAGAAAGCATTAC
TTTCAGCGAGTCAGTACTTCGGTATGAAGCGCTACGCCTCTGTTGCAATT
GCCGGCAGCATAGGGTTAGGGTCAGAGAATCTGCCCTGGCACGAACAGAA
ATCTCTTGGCGGCCATACCAACGTCAGAGGATACTCTTACGGAGAACTTG
GAAGACATAAATCGTATGCTACCGCTCGCGCAGAACTACGTGTTCCTCTC
ACGCACTTGGAGGCGACAGCTGGTCCAAGCCTCCCTGCGGATGAAGAACA
GAAGGAGCCTAGCGAAAAAGTGGATGGGAAAAAGAAGAGCGATAACAACG
AAAAGAAAGACGACGAGTCTAATAAGTTGTCAGGCATTGATAGCAAGTTG
CCACCGCTTGTTGGAGTTTTATTTGGGGACATTGCACTAGAAAATTCCGC
TAATCGGGAAATTCTAGGCACGAGTTATGGAGTCGGGCTTCGCGTTGCAG
GCATTGTGTCCATAGACTGGACAAGAACAGTTGAGGAAGGGCGATCTAGC
GTTCACGTAGGGCTTGTAGATCGCAGTTGGTAA
back to top

Coding sequence (CDS) from alignment at tig00004378_pilon:247885..249417-

>Gchil3460.t1 ID=Gchil3460.t1|Name=Gchil3460.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1533bp|location=Sequence derived from alignment at tig00004378_pilon:247885..249417- (Gracilaria chilensis NLEC103_M9 male)
ATGGAGGGCCGTCGAGTCCGAGGCAAGGAGCTCAGAGAAAGAATCGCCCG
AGCCAACAAGTGGTACTCAGACAATGCATACGTCTGCTCCAGGATGCTGG
TTATACAGGTTCCTGGCCTGTTCCATAACACCCTTACTGTGTTCTGCTCA
GAACCCTCTCTCAACCAGGTAAAGATCATTCCCGTTGACAAAGATGACAA
GCCGGAGGCGGGTACTCACATCAAGACGCGTCTTCGCACCATATGCAACG
CCCTCGGCGTGCAAATTGGCGAAGTCTTCATGTGGAAGCCAGAGGGATTC
GGCTCTCTTATGGCTCTAGGCATCTTTGACTATGCTGATGCTGAGGTGAG
CATACTTTCCGACGAAAGCGTCCAGCTCCGTTTGTATCTCCGCGAAAAGC
CAAGCGGGAAAATAGAGCCAGGTGCTGGTATGTCTACAGATGGTCGAGTC
TTTGGCGATATCAGTGTATCGGACAACAATTTCATGGGCCGTGCTCAACG
ACTACGCGTCGCTTGGCAAAAGAGAATTGACGAAGGGCGCTCATCGGGCG
GTATCCTTTTCGAAGACATGAGAATAGGAGCAAACATTCCCCTTTCTTTC
AAGTTCAAAGCGTACCGTGATTCCAGTTCAAAGCGTGGCATTCCTGTTAA
TCGCTCGGCGAGCGAACAGCGCACACATGTCCACCCCCGTAGAGATAACC
GTGATTTTGATTCGCAGCTTTTCTACGAAAAGGACAGAGACGGTATCATG
GTAGACATCGGGTTTCGTCCGAAGGACACCTTTATGATGTACAATTTAAC
CCCCAAGTTCGAGATCATTCATCCTAATCTAGTTGACTCCTTGAGTGCTT
CTACCACGTCGCAAATGGTACTGCAAAATTCATTTACGCACGCTACGAGA
CTACCGGTGGAACTCCCGCGTCATGGTCATATTTTTAGAATCGAACATAG
TGTCGGCAATGTGCTCCGGTCTTCAAATCGCCCGTTTCAGAAAGCATTAC
TTTCAGCGAGTCAGTACTTCGGTATGAAGCGCTACGCCTCTGTTGCAATT
GCCGGCAGCATAGGGTTAGGGTCAGAGAATCTGCCCTGGCACGAACAGAA
ATCTCTTGGCGGCCATACCAACGTCAGAGGATACTCTTACGGAGAACTTG
GAAGACATAAATCGTATGCTACCGCTCGCGCAGAACTACGTGTTCCTCTC
ACGCACTTGGAGGCGACAGCTGGTCCAAGCCTCCCTGCGGATGAAGAACA
GAAGGAGCCTAGCGAAAAAGTGGATGGGAAAAAGAAGAGCGATAACAACG
AAAAGAAAGACGACGAGTCTAATAAGTTGTCAGGCATTGATAGCAAGTTG
CCACCGCTTGTTGGAGTTTTATTTGGGGACATTGCACTAGAAAATTCCGC
TAATCGGGAAATTCTAGGCACGAGTTATGGAGTCGGGCTTCGCGTTGCAG
GCATTGTGTCCATAGACTGGACAAGAACAGTTGAGGAAGGGCGATCTAGC
GTTCACGTAGGGCTTGTAGATCGCAGTTGGTAA
back to top