Gchil3457.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gchil3457.t1
Unique Name	Gchil3457.t1
Type	mRNA
Organism	Gracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length	677

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00004378_pilon	contig	tig00004378_pilon:242321..244351 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria chilensis NLEC103_M9 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	248742.XP_005649264.1
PFAMs	ABC2_membrane,ABC_tran
Max annot lvl	3041\|Chlorophyta
KEGG ko	ko:K21396
KEGG TC	3.A.1.204
Evalue	3.36e-203
EggNOG OGs	COG1131@1\|root,KOG0061@2759\|Eukaryota,37JQZ@33090\|Viridiplantae,34H44@3041\|Chlorophyta
Description	ABC(ABCG) family transporter White protein-like protein (ABCG)
COG category	Q
BRITE	ko00000,ko02000

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gchil3457	Gchil3457	Gracilaria chilensis NLEC103_M9 male	gene	tig00004378_pilon 242321..244351 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil3457.t1.start1	Gchil3457.t1.start1	Gracilaria chilensis NLEC103_M9 male	start_codon	tig00004378_pilon 242321..242323 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil3457.t1.CDS1	Gchil3457.t1.CDS1	Gracilaria chilensis NLEC103_M9 male	CDS	tig00004378_pilon 242321..244351 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil3457.t1.exon1	Gchil3457.t1.exon1	Gracilaria chilensis NLEC103_M9 male	exon	tig00004378_pilon 242321..244351 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil3457.t1.stop1	Gchil3457.t1.stop1	Gracilaria chilensis NLEC103_M9 male	stop_codon	tig00004378_pilon 244349..244351 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil3457.t1	Gchil3457.t1	Gracilaria chilensis NLEC103_M9 male	polypeptide	tig00004378_pilon 242321..244351 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00004378_pilon:242321..244351+
coding sequence from alignment at tig00004378_pilon:242321..244351+

mRNA sequence

>Gchil3457.t1 ID=Gchil3457.t1|Name=Gchil3457.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=677bp
MLLAVGGLMASLAMPGRSLPTLLITATATTINIIRKARKKPTQERLKESS
AAPQPVTVEWSHVTCTLSSPKRPTTTRVLDDVSGTAKPGRVMAILGPSGA
GKTTLLNALAGRFPESSKTRLCGRITRNGIPVDEDTQPVAYVTQEDLFFS
QLTVRETLDIAAALRLPGNMSQAQKREFVDALIRKLGLVSTVNTRVGDEK
SRGISGGERKRLSLGSELISTPQLILCDEPTSGLDAFQAVNVMKSLRDLA
ETGHTVICSIHQPSSSIFSMVDDIVLLANGRIVYTGDAKKAPAFFEKEGF
SMPAQCNPAERYLELISVDFSSFKTIAESRTRIDKLTSAFYKRCAKANTT
DIAIADEKLGNNQFVESTPPLGFFGRLRLLFHRAWKQVTRDKKTNVSRFM
SSFMSALLFGTIYWRIGNTQSTIQDRLGLLQVCAINTAMTALVKTLYVFP
KESVLINRERSRGSYNVAQYFLSKLLAEMPVSAFFPLVFSLTVYPMVRLS
GGLRKILLFMGVITLESFTAASYGLAIGAIMPTTEAAVAVGPSSFVLQIV
FGGLYLAEANVPVWARWIPRVSLIKHAYEGLCVNEFQGLEFQVERPHDLK
TGDQVLQRMNWENSTVMKTCMSQARVLAFNYLATYAILVLKKPRYERVHE
SKIDRETSQAELEDANTLPNGKTSTA*

spliced messenger RNA

>Gchil3457.t1 ID=Gchil3457.t1|Name=Gchil3457.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=2031bp|location=Sequence derived from alignment at tig00004378_pilon:242321..244351+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCTGCTGGCGGTAGGCGGCCTCATGGCCAGTTTGGCTATGCCAGGGCG
CTCACTTCCGACTTTGCTAATAACAGCCACAGCCACCACCATAAATATTA
TCCGAAAGGCTCGGAAGAAACCAACTCAAGAGCGTTTAAAAGAAAGTTCA
GCCGCACCGCAACCAGTCACTGTGGAATGGTCGCACGTCACCTGTACTCT
CTCCTCGCCTAAGCGCCCTACCACTACGCGCGTGCTTGACGACGTGTCTG
GAACCGCAAAGCCAGGACGCGTTATGGCTATTCTAGGACCGTCTGGTGCG
GGAAAAACCACTCTTCTGAACGCCTTAGCAGGCCGGTTCCCAGAATCTTC
AAAAACTCGTCTCTGCGGTCGTATCACGCGAAATGGAATCCCAGTTGATG
AAGATACGCAACCAGTAGCCTACGTTACTCAAGAAGACCTCTTCTTTTCA
CAGCTGACTGTGCGAGAAACCCTGGACATTGCAGCTGCGTTAAGACTTCC
AGGAAATATGTCGCAAGCTCAGAAGCGGGAGTTTGTTGATGCCCTTATAC
GAAAGTTGGGGCTTGTTTCTACTGTCAACACTCGCGTTGGTGATGAGAAG
AGTAGAGGCATCTCTGGTGGAGAAAGGAAGAGGTTGTCGCTTGGCTCTGA
GCTCATTTCAACTCCACAACTTATCCTATGCGATGAGCCTACGTCTGGCC
TGGATGCATTCCAAGCTGTCAACGTAATGAAGAGTTTACGAGACCTTGCG
GAAACTGGACATACTGTCATTTGTTCGATTCATCAGCCAAGTTCAAGCAT
TTTTTCCATGGTTGATGACATTGTATTGCTTGCAAACGGACGTATTGTTT
ACACTGGTGATGCGAAGAAAGCCCCAGCTTTCTTTGAGAAAGAAGGGTTT
TCTATGCCTGCTCAATGCAATCCTGCGGAGCGATATCTTGAGCTTATTTC
AGTTGATTTCTCGTCATTTAAAACGATTGCAGAATCGAGAACACGCATCG
ATAAACTCACTAGTGCGTTTTACAAGCGATGTGCAAAGGCAAATACGACT
GATATCGCCATCGCGGATGAAAAGCTTGGAAACAACCAATTCGTGGAAAG
CACGCCTCCTTTGGGATTCTTTGGTCGACTTCGTTTGTTGTTTCATCGGG
CTTGGAAACAGGTCACGCGTGACAAGAAGACAAATGTTTCTCGCTTCATG
TCGTCTTTCATGAGTGCGCTTCTGTTTGGAACAATTTACTGGAGAATTGG
CAACACTCAGAGTACAATTCAAGACCGTCTTGGTTTGCTACAAGTCTGCG
CAATCAACACTGCTATGACTGCACTCGTGAAGACCCTTTATGTGTTCCCA
AAGGAGAGCGTGCTCATCAATCGAGAGCGCTCCAGAGGTTCTTATAATGT
TGCGCAGTATTTCCTGAGCAAGCTGCTTGCTGAAATGCCGGTGAGTGCAT
TCTTTCCACTGGTGTTTTCACTCACTGTTTATCCCATGGTCCGGCTTTCT
GGGGGTTTGCGTAAGATTCTACTCTTCATGGGTGTCATTACTCTAGAATC
TTTTACTGCTGCTTCATATGGGTTAGCCATTGGTGCCATCATGCCTACTA
CTGAAGCCGCTGTTGCAGTTGGGCCGTCAAGCTTTGTGCTACAGATTGTT
TTTGGCGGTTTATACCTCGCTGAAGCAAATGTTCCTGTGTGGGCGCGTTG
GATTCCGCGTGTCTCGTTGATAAAACATGCATATGAAGGGTTGTGTGTCA
ACGAGTTTCAAGGACTTGAGTTCCAAGTTGAACGCCCACACGATTTGAAG
ACGGGGGATCAGGTTCTTCAACGCATGAACTGGGAGAATTCTACCGTTAT
GAAAACTTGCATGTCTCAAGCTCGAGTGCTGGCATTTAACTATTTGGCGA
CTTACGCAATTCTGGTTCTCAAGAAGCCACGGTATGAAAGAGTACATGAA
TCCAAAATCGACCGTGAAACGAGTCAGGCTGAATTAGAAGATGCAAATAC
GCTACCAAATGGAAAAACGTCCACAGCCTGA

protein sequence of Gchil3457.t1

>Gchil3457.t1 ID=Gchil3457.t1|Name=Gchil3457.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=677bp
MLLAVGGLMASLAMPGRSLPTLLITATATTINIIRKARKKPTQERLKESS
AAPQPVTVEWSHVTCTLSSPKRPTTTRVLDDVSGTAKPGRVMAILGPSGA
GKTTLLNALAGRFPESSKTRLCGRITRNGIPVDEDTQPVAYVTQEDLFFS
QLTVRETLDIAAALRLPGNMSQAQKREFVDALIRKLGLVSTVNTRVGDEK
SRGISGGERKRLSLGSELISTPQLILCDEPTSGLDAFQAVNVMKSLRDLA
ETGHTVICSIHQPSSSIFSMVDDIVLLANGRIVYTGDAKKAPAFFEKEGF
SMPAQCNPAERYLELISVDFSSFKTIAESRTRIDKLTSAFYKRCAKANTT
DIAIADEKLGNNQFVESTPPLGFFGRLRLLFHRAWKQVTRDKKTNVSRFM
SSFMSALLFGTIYWRIGNTQSTIQDRLGLLQVCAINTAMTALVKTLYVFP
KESVLINRERSRGSYNVAQYFLSKLLAEMPVSAFFPLVFSLTVYPMVRLS
GGLRKILLFMGVITLESFTAASYGLAIGAIMPTTEAAVAVGPSSFVLQIV
FGGLYLAEANVPVWARWIPRVSLIKHAYEGLCVNEFQGLEFQVERPHDLK
TGDQVLQRMNWENSTVMKTCMSQARVLAFNYLATYAILVLKKPRYERVHE
SKIDRETSQAELEDANTLPNGKTSTA*

mRNA from alignment at tig00004378_pilon:242321..244351+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gchil3457.t1 ID=Gchil3457.t1|Name=Gchil3457.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=2031bp|location=Sequence derived from alignment at tig00004378_pilon:242321..244351+ (Gracilaria chilensis NLEC103_M9 male)
ATGCTGCTGGCGGTAGGCGGCCTCATGGCCAGTTTGGCTATGCCAGGGCG
CTCACTTCCGACTTTGCTAATAACAGCCACAGCCACCACCATAAATATTA
TCCGAAAGGCTCGGAAGAAACCAACTCAAGAGCGTTTAAAAGAAAGTTCA
GCCGCACCGCAACCAGTCACTGTGGAATGGTCGCACGTCACCTGTACTCT
CTCCTCGCCTAAGCGCCCTACCACTACGCGCGTGCTTGACGACGTGTCTG
GAACCGCAAAGCCAGGACGCGTTATGGCTATTCTAGGACCGTCTGGTGCG
GGAAAAACCACTCTTCTGAACGCCTTAGCAGGCCGGTTCCCAGAATCTTC
AAAAACTCGTCTCTGCGGTCGTATCACGCGAAATGGAATCCCAGTTGATG
AAGATACGCAACCAGTAGCCTACGTTACTCAAGAAGACCTCTTCTTTTCA
CAGCTGACTGTGCGAGAAACCCTGGACATTGCAGCTGCGTTAAGACTTCC
AGGAAATATGTCGCAAGCTCAGAAGCGGGAGTTTGTTGATGCCCTTATAC
GAAAGTTGGGGCTTGTTTCTACTGTCAACACTCGCGTTGGTGATGAGAAG
AGTAGAGGCATCTCTGGTGGAGAAAGGAAGAGGTTGTCGCTTGGCTCTGA
GCTCATTTCAACTCCACAACTTATCCTATGCGATGAGCCTACGTCTGGCC
TGGATGCATTCCAAGCTGTCAACGTAATGAAGAGTTTACGAGACCTTGCG
GAAACTGGACATACTGTCATTTGTTCGATTCATCAGCCAAGTTCAAGCAT
TTTTTCCATGGTTGATGACATTGTATTGCTTGCAAACGGACGTATTGTTT
ACACTGGTGATGCGAAGAAAGCCCCAGCTTTCTTTGAGAAAGAAGGGTTT
TCTATGCCTGCTCAATGCAATCCTGCGGAGCGATATCTTGAGCTTATTTC
AGTTGATTTCTCGTCATTTAAAACGATTGCAGAATCGAGAACACGCATCG
ATAAACTCACTAGTGCGTTTTACAAGCGATGTGCAAAGGCAAATACGACT
GATATCGCCATCGCGGATGAAAAGCTTGGAAACAACCAATTCGTGGAAAG
CACGCCTCCTTTGGGATTCTTTGGTCGACTTCGTTTGTTGTTTCATCGGG
CTTGGAAACAGGTCACGCGTGACAAGAAGACAAATGTTTCTCGCTTCATG
TCGTCTTTCATGAGTGCGCTTCTGTTTGGAACAATTTACTGGAGAATTGG
CAACACTCAGAGTACAATTCAAGACCGTCTTGGTTTGCTACAAGTCTGCG
CAATCAACACTGCTATGACTGCACTCGTGAAGACCCTTTATGTGTTCCCA
AAGGAGAGCGTGCTCATCAATCGAGAGCGCTCCAGAGGTTCTTATAATGT
TGCGCAGTATTTCCTGAGCAAGCTGCTTGCTGAAATGCCGGTGAGTGCAT
TCTTTCCACTGGTGTTTTCACTCACTGTTTATCCCATGGTCCGGCTTTCT
GGGGGTTTGCGTAAGATTCTACTCTTCATGGGTGTCATTACTCTAGAATC
TTTTACTGCTGCTTCATATGGGTTAGCCATTGGTGCCATCATGCCTACTA
CTGAAGCCGCTGTTGCAGTTGGGCCGTCAAGCTTTGTGCTACAGATTGTT
TTTGGCGGTTTATACCTCGCTGAAGCAAATGTTCCTGTGTGGGCGCGTTG
GATTCCGCGTGTCTCGTTGATAAAACATGCATATGAAGGGTTGTGTGTCA
ACGAGTTTCAAGGACTTGAGTTCCAAGTTGAACGCCCACACGATTTGAAG
ACGGGGGATCAGGTTCTTCAACGCATGAACTGGGAGAATTCTACCGTTAT
GAAAACTTGCATGTCTCAAGCTCGAGTGCTGGCATTTAACTATTTGGCGA
CTTACGCAATTCTGGTTCTCAAGAAGCCACGGTATGAAAGAGTACATGAA
TCCAAAATCGACCGTGAAACGAGTCAGGCTGAATTAGAAGATGCAAATAC
GCTACCAAATGGAAAAACGTCCACAGCCTGA

Coding sequence (CDS) from alignment at tig00004378_pilon:242321..244351+

>Gchil3457.t1 ID=Gchil3457.t1|Name=Gchil3457.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=2031bp|location=Sequence derived from alignment at tig00004378_pilon:242321..244351+ (Gracilaria chilensis NLEC103_M9 male)
ATGCTGCTGGCGGTAGGCGGCCTCATGGCCAGTTTGGCTATGCCAGGGCG
CTCACTTCCGACTTTGCTAATAACAGCCACAGCCACCACCATAAATATTA
TCCGAAAGGCTCGGAAGAAACCAACTCAAGAGCGTTTAAAAGAAAGTTCA
GCCGCACCGCAACCAGTCACTGTGGAATGGTCGCACGTCACCTGTACTCT
CTCCTCGCCTAAGCGCCCTACCACTACGCGCGTGCTTGACGACGTGTCTG
GAACCGCAAAGCCAGGACGCGTTATGGCTATTCTAGGACCGTCTGGTGCG
GGAAAAACCACTCTTCTGAACGCCTTAGCAGGCCGGTTCCCAGAATCTTC
AAAAACTCGTCTCTGCGGTCGTATCACGCGAAATGGAATCCCAGTTGATG
AAGATACGCAACCAGTAGCCTACGTTACTCAAGAAGACCTCTTCTTTTCA
CAGCTGACTGTGCGAGAAACCCTGGACATTGCAGCTGCGTTAAGACTTCC
AGGAAATATGTCGCAAGCTCAGAAGCGGGAGTTTGTTGATGCCCTTATAC
GAAAGTTGGGGCTTGTTTCTACTGTCAACACTCGCGTTGGTGATGAGAAG
AGTAGAGGCATCTCTGGTGGAGAAAGGAAGAGGTTGTCGCTTGGCTCTGA
GCTCATTTCAACTCCACAACTTATCCTATGCGATGAGCCTACGTCTGGCC
TGGATGCATTCCAAGCTGTCAACGTAATGAAGAGTTTACGAGACCTTGCG
GAAACTGGACATACTGTCATTTGTTCGATTCATCAGCCAAGTTCAAGCAT
TTTTTCCATGGTTGATGACATTGTATTGCTTGCAAACGGACGTATTGTTT
ACACTGGTGATGCGAAGAAAGCCCCAGCTTTCTTTGAGAAAGAAGGGTTT
TCTATGCCTGCTCAATGCAATCCTGCGGAGCGATATCTTGAGCTTATTTC
AGTTGATTTCTCGTCATTTAAAACGATTGCAGAATCGAGAACACGCATCG
ATAAACTCACTAGTGCGTTTTACAAGCGATGTGCAAAGGCAAATACGACT
GATATCGCCATCGCGGATGAAAAGCTTGGAAACAACCAATTCGTGGAAAG
CACGCCTCCTTTGGGATTCTTTGGTCGACTTCGTTTGTTGTTTCATCGGG
CTTGGAAACAGGTCACGCGTGACAAGAAGACAAATGTTTCTCGCTTCATG
TCGTCTTTCATGAGTGCGCTTCTGTTTGGAACAATTTACTGGAGAATTGG
CAACACTCAGAGTACAATTCAAGACCGTCTTGGTTTGCTACAAGTCTGCG
CAATCAACACTGCTATGACTGCACTCGTGAAGACCCTTTATGTGTTCCCA
AAGGAGAGCGTGCTCATCAATCGAGAGCGCTCCAGAGGTTCTTATAATGT
TGCGCAGTATTTCCTGAGCAAGCTGCTTGCTGAAATGCCGGTGAGTGCAT
TCTTTCCACTGGTGTTTTCACTCACTGTTTATCCCATGGTCCGGCTTTCT
GGGGGTTTGCGTAAGATTCTACTCTTCATGGGTGTCATTACTCTAGAATC
TTTTACTGCTGCTTCATATGGGTTAGCCATTGGTGCCATCATGCCTACTA
CTGAAGCCGCTGTTGCAGTTGGGCCGTCAAGCTTTGTGCTACAGATTGTT
TTTGGCGGTTTATACCTCGCTGAAGCAAATGTTCCTGTGTGGGCGCGTTG
GATTCCGCGTGTCTCGTTGATAAAACATGCATATGAAGGGTTGTGTGTCA
ACGAGTTTCAAGGACTTGAGTTCCAAGTTGAACGCCCACACGATTTGAAG
ACGGGGGATCAGGTTCTTCAACGCATGAACTGGGAGAATTCTACCGTTAT
GAAAACTTGCATGTCTCAAGCTCGAGTGCTGGCATTTAACTATTTGGCGA
CTTACGCAATTCTGGTTCTCAAGAAGCCACGGTATGAAAGAGTACATGAA
TCCAAAATCGACCGTGAAACGAGTCAGGCTGAATTAGAAGATGCAAATAC
GCTACCAAATGGAAAAACGTCCACAGCCTGA