Gchil3452.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gchil3452.t1
Unique Name	Gchil3452.t1
Type	mRNA
Organism	Gracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length	633

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00004378_pilon	contig	tig00004378_pilon:220391..222289 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria chilensis NLEC103_M9 male OGS1.0	2022-05-09

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gchil3452	Gchil3452	Gracilaria chilensis NLEC103_M9 male	gene	tig00004378_pilon 220391..222289 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil3452.t1.start1	Gchil3452.t1.start1	Gracilaria chilensis NLEC103_M9 male	start_codon	tig00004378_pilon 220391..220393 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil3452.t1.CDS1	Gchil3452.t1.CDS1	Gracilaria chilensis NLEC103_M9 male	CDS	tig00004378_pilon 220391..222289 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil3452.t1.exon1	Gchil3452.t1.exon1	Gracilaria chilensis NLEC103_M9 male	exon	tig00004378_pilon 220391..222289 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil3452.t1.stop1	Gchil3452.t1.stop1	Gracilaria chilensis NLEC103_M9 male	stop_codon	tig00004378_pilon 222287..222289 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil3452.t1	Gchil3452.t1	Gracilaria chilensis NLEC103_M9 male	polypeptide	tig00004378_pilon 220391..222289 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00004378_pilon:220391..222289+
coding sequence from alignment at tig00004378_pilon:220391..222289+

mRNA sequence

>Gchil3452.t1 ID=Gchil3452.t1|Name=Gchil3452.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=633bp
MKIAVIGGNLLGCATALDLALVEEHDKSSFASDDHFSVTILERQAALGGN
SLRSVQIDDYFNVEVGSYATLPILQGTFLYDLIDTANDGRGTIPVFNRRV
PMPGSTVSRRGHVQAAVVKKPWASGSYRALIRSYALWNWGDDTYSLVHTG
WSLFDVLYRVLNNNIWRTVLFSFFLYSAEHLKTKVAGKINRAILMAQCLV
LLVLAVLSPKQVVKMWQENYSFWGTTLTLLLKYGITPAIARGSVVGFTKM
ISRMNTRNVATCSISVGSLVRRAELDSYLRSTAMDYTTQFQYKREYVDRH
IAPTVIQEYTGSEMKRVNALALQFSMLDSDPMNSDAKNRFCTIAPNNAAL
CTSLINAAKATMPVDIKLDTTVTDIVFDEESKKYNITYSEGNRESFDGVV
LCASTKEGEMTIDTPVGNSLSNMLGYVRDAETAHEAANEQSRVEAPECST
TAEQDPEEEIVPSSSCSNVAVVVGKAQSSFFRFADEKKIPDCIDVVNAPG
FSRFERVREMSSEKPGVYKIICGENFVSSGLIHEMFEEGAQLKYFEPIAR
NAYSVSVLPRQKHVDDCMPYLVLGTHFIYAKALRRIAKHPEMDAIAAVNS
ASLFSKAVQWGSENEKSEGGEQDDGNCGFQNE*

spliced messenger RNA

>Gchil3452.t1 ID=Gchil3452.t1|Name=Gchil3452.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1899bp|location=Sequence derived from alignment at tig00004378_pilon:220391..222289+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAAGATTGCGGTGATAGGGGGCAACTTGCTTGGATGTGCCACAGCGCT
AGATCTTGCACTCGTCGAAGAGCATGATAAGAGCAGTTTCGCATCGGATG
ACCATTTTTCTGTCACCATTCTAGAACGTCAAGCAGCATTAGGTGGAAAC
TCTCTGCGTTCAGTTCAGATTGATGATTATTTCAACGTAGAAGTTGGGTC
TTACGCTACACTTCCAATTCTTCAAGGTACCTTTCTTTACGATCTGATTG
ACACTGCTAACGATGGACGTGGAACTATTCCCGTCTTCAATAGACGAGTA
CCGATGCCCGGTTCTACTGTTTCGCGACGCGGTCATGTGCAAGCAGCGGT
AGTTAAGAAACCATGGGCTTCTGGATCTTATCGAGCACTTATTCGAAGCT
ACGCCTTATGGAATTGGGGCGATGATACATATTCACTTGTACATACGGGA
TGGTCACTTTTTGACGTGCTCTATCGTGTTTTGAATAACAACATCTGGCG
TACTGTTTTGTTTTCCTTCTTTCTATATTCAGCCGAACACTTGAAAACGA
AGGTGGCGGGAAAGATAAACCGCGCCATTTTGATGGCTCAGTGCCTGGTT
CTACTGGTGCTTGCTGTACTTTCTCCGAAACAGGTGGTTAAAATGTGGCA
AGAGAACTATTCTTTCTGGGGAACCACTTTGACGCTTTTACTCAAGTATG
GTATCACACCAGCTATTGCCCGTGGGAGCGTTGTTGGCTTTACCAAAATG
ATTTCCAGGATGAACACGAGGAACGTTGCTACTTGTTCTATATCTGTTGG
TTCTCTCGTAAGGCGTGCTGAACTTGACTCGTATTTGCGTAGTACTGCCA
TGGATTACACCACTCAATTTCAGTACAAGCGTGAATACGTCGACCGTCAC
ATTGCCCCTACCGTGATTCAGGAGTATACTGGTTCTGAAATGAAGCGGGT
TAATGCGCTAGCCTTGCAGTTTTCTATGCTGGACTCTGATCCGATGAACA
GTGATGCCAAGAATCGCTTTTGTACAATTGCTCCGAACAATGCCGCCCTC
TGTACATCGTTGATAAACGCCGCAAAGGCCACTATGCCAGTAGATATCAA
GCTGGATACCACGGTCACAGATATTGTTTTCGACGAAGAATCTAAAAAAT
ACAACATAACGTATTCCGAAGGAAATAGGGAGTCTTTTGATGGTGTAGTT
CTGTGTGCATCGACGAAGGAGGGAGAAATGACGATTGATACACCAGTTGG
AAATTCTTTATCAAACATGCTTGGATACGTTCGCGATGCCGAAACAGCAC
ATGAAGCAGCGAATGAACAATCCAGAGTTGAAGCTCCTGAGTGTAGCACC
ACAGCTGAACAAGACCCAGAAGAGGAGATTGTTCCATCTAGTTCGTGTTC
AAATGTAGCTGTTGTTGTAGGCAAAGCACAATCTTCCTTCTTCCGCTTTG
CTGACGAAAAGAAGATTCCAGACTGCATTGATGTGGTGAACGCGCCTGGG
TTCTCTCGTTTTGAACGTGTGCGAGAGATGTCGAGCGAAAAACCAGGGGT
TTACAAAATCATATGTGGGGAAAATTTTGTATCGTCGGGCTTGATTCATG
AAATGTTTGAAGAGGGTGCCCAGCTTAAGTACTTCGAGCCGATTGCGCGC
AATGCGTATTCAGTGTCTGTCCTTCCCCGTCAAAAGCATGTCGATGATTG
CATGCCATACCTAGTGCTTGGAACACATTTCATTTACGCCAAGGCTCTGC
GTCGCATTGCAAAACATCCGGAGATGGATGCTATAGCAGCCGTGAACTCG
GCAAGCCTGTTTTCGAAAGCCGTTCAATGGGGTTCCGAAAATGAAAAATC
TGAAGGCGGCGAGCAAGATGATGGTAATtgtgggttccaaaatgagtag

protein sequence of Gchil3452.t1

>Gchil3452.t1 ID=Gchil3452.t1|Name=Gchil3452.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=633bp
MKIAVIGGNLLGCATALDLALVEEHDKSSFASDDHFSVTILERQAALGGN
SLRSVQIDDYFNVEVGSYATLPILQGTFLYDLIDTANDGRGTIPVFNRRV
PMPGSTVSRRGHVQAAVVKKPWASGSYRALIRSYALWNWGDDTYSLVHTG
WSLFDVLYRVLNNNIWRTVLFSFFLYSAEHLKTKVAGKINRAILMAQCLV
LLVLAVLSPKQVVKMWQENYSFWGTTLTLLLKYGITPAIARGSVVGFTKM
ISRMNTRNVATCSISVGSLVRRAELDSYLRSTAMDYTTQFQYKREYVDRH
IAPTVIQEYTGSEMKRVNALALQFSMLDSDPMNSDAKNRFCTIAPNNAAL
CTSLINAAKATMPVDIKLDTTVTDIVFDEESKKYNITYSEGNRESFDGVV
LCASTKEGEMTIDTPVGNSLSNMLGYVRDAETAHEAANEQSRVEAPECST
TAEQDPEEEIVPSSSCSNVAVVVGKAQSSFFRFADEKKIPDCIDVVNAPG
FSRFERVREMSSEKPGVYKIICGENFVSSGLIHEMFEEGAQLKYFEPIAR
NAYSVSVLPRQKHVDDCMPYLVLGTHFIYAKALRRIAKHPEMDAIAAVNS
ASLFSKAVQWGSENEKSEGGEQDDGNCGFQNE*

mRNA from alignment at tig00004378_pilon:220391..222289+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gchil3452.t1 ID=Gchil3452.t1|Name=Gchil3452.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1899bp|location=Sequence derived from alignment at tig00004378_pilon:220391..222289+ (Gracilaria chilensis NLEC103_M9 male)
ATGAAGATTGCGGTGATAGGGGGCAACTTGCTTGGATGTGCCACAGCGCT
AGATCTTGCACTCGTCGAAGAGCATGATAAGAGCAGTTTCGCATCGGATG
ACCATTTTTCTGTCACCATTCTAGAACGTCAAGCAGCATTAGGTGGAAAC
TCTCTGCGTTCAGTTCAGATTGATGATTATTTCAACGTAGAAGTTGGGTC
TTACGCTACACTTCCAATTCTTCAAGGTACCTTTCTTTACGATCTGATTG
ACACTGCTAACGATGGACGTGGAACTATTCCCGTCTTCAATAGACGAGTA
CCGATGCCCGGTTCTACTGTTTCGCGACGCGGTCATGTGCAAGCAGCGGT
AGTTAAGAAACCATGGGCTTCTGGATCTTATCGAGCACTTATTCGAAGCT
ACGCCTTATGGAATTGGGGCGATGATACATATTCACTTGTACATACGGGA
TGGTCACTTTTTGACGTGCTCTATCGTGTTTTGAATAACAACATCTGGCG
TACTGTTTTGTTTTCCTTCTTTCTATATTCAGCCGAACACTTGAAAACGA
AGGTGGCGGGAAAGATAAACCGCGCCATTTTGATGGCTCAGTGCCTGGTT
CTACTGGTGCTTGCTGTACTTTCTCCGAAACAGGTGGTTAAAATGTGGCA
AGAGAACTATTCTTTCTGGGGAACCACTTTGACGCTTTTACTCAAGTATG
GTATCACACCAGCTATTGCCCGTGGGAGCGTTGTTGGCTTTACCAAAATG
ATTTCCAGGATGAACACGAGGAACGTTGCTACTTGTTCTATATCTGTTGG
TTCTCTCGTAAGGCGTGCTGAACTTGACTCGTATTTGCGTAGTACTGCCA
TGGATTACACCACTCAATTTCAGTACAAGCGTGAATACGTCGACCGTCAC
ATTGCCCCTACCGTGATTCAGGAGTATACTGGTTCTGAAATGAAGCGGGT
TAATGCGCTAGCCTTGCAGTTTTCTATGCTGGACTCTGATCCGATGAACA
GTGATGCCAAGAATCGCTTTTGTACAATTGCTCCGAACAATGCCGCCCTC
TGTACATCGTTGATAAACGCCGCAAAGGCCACTATGCCAGTAGATATCAA
GCTGGATACCACGGTCACAGATATTGTTTTCGACGAAGAATCTAAAAAAT
ACAACATAACGTATTCCGAAGGAAATAGGGAGTCTTTTGATGGTGTAGTT
CTGTGTGCATCGACGAAGGAGGGAGAAATGACGATTGATACACCAGTTGG
AAATTCTTTATCAAACATGCTTGGATACGTTCGCGATGCCGAAACAGCAC
ATGAAGCAGCGAATGAACAATCCAGAGTTGAAGCTCCTGAGTGTAGCACC
ACAGCTGAACAAGACCCAGAAGAGGAGATTGTTCCATCTAGTTCGTGTTC
AAATGTAGCTGTTGTTGTAGGCAAAGCACAATCTTCCTTCTTCCGCTTTG
CTGACGAAAAGAAGATTCCAGACTGCATTGATGTGGTGAACGCGCCTGGG
TTCTCTCGTTTTGAACGTGTGCGAGAGATGTCGAGCGAAAAACCAGGGGT
TTACAAAATCATATGTGGGGAAAATTTTGTATCGTCGGGCTTGATTCATG
AAATGTTTGAAGAGGGTGCCCAGCTTAAGTACTTCGAGCCGATTGCGCGC
AATGCGTATTCAGTGTCTGTCCTTCCCCGTCAAAAGCATGTCGATGATTG
CATGCCATACCTAGTGCTTGGAACACATTTCATTTACGCCAAGGCTCTGC
GTCGCATTGCAAAACATCCGGAGATGGATGCTATAGCAGCCGTGAACTCG
GCAAGCCTGTTTTCGAAAGCCGTTCAATGGGGTTCCGAAAATGAAAAATC
TGAAGGCGGCGAGCAAGATGATGGTAATtgtgggttccaaaatgagtag

Coding sequence (CDS) from alignment at tig00004378_pilon:220391..222289+

>Gchil3452.t1 ID=Gchil3452.t1|Name=Gchil3452.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1899bp|location=Sequence derived from alignment at tig00004378_pilon:220391..222289+ (Gracilaria chilensis NLEC103_M9 male)
ATGAAGATTGCGGTGATAGGGGGCAACTTGCTTGGATGTGCCACAGCGCT
AGATCTTGCACTCGTCGAAGAGCATGATAAGAGCAGTTTCGCATCGGATG
ACCATTTTTCTGTCACCATTCTAGAACGTCAAGCAGCATTAGGTGGAAAC
TCTCTGCGTTCAGTTCAGATTGATGATTATTTCAACGTAGAAGTTGGGTC
TTACGCTACACTTCCAATTCTTCAAGGTACCTTTCTTTACGATCTGATTG
ACACTGCTAACGATGGACGTGGAACTATTCCCGTCTTCAATAGACGAGTA
CCGATGCCCGGTTCTACTGTTTCGCGACGCGGTCATGTGCAAGCAGCGGT
AGTTAAGAAACCATGGGCTTCTGGATCTTATCGAGCACTTATTCGAAGCT
ACGCCTTATGGAATTGGGGCGATGATACATATTCACTTGTACATACGGGA
TGGTCACTTTTTGACGTGCTCTATCGTGTTTTGAATAACAACATCTGGCG
TACTGTTTTGTTTTCCTTCTTTCTATATTCAGCCGAACACTTGAAAACGA
AGGTGGCGGGAAAGATAAACCGCGCCATTTTGATGGCTCAGTGCCTGGTT
CTACTGGTGCTTGCTGTACTTTCTCCGAAACAGGTGGTTAAAATGTGGCA
AGAGAACTATTCTTTCTGGGGAACCACTTTGACGCTTTTACTCAAGTATG
GTATCACACCAGCTATTGCCCGTGGGAGCGTTGTTGGCTTTACCAAAATG
ATTTCCAGGATGAACACGAGGAACGTTGCTACTTGTTCTATATCTGTTGG
TTCTCTCGTAAGGCGTGCTGAACTTGACTCGTATTTGCGTAGTACTGCCA
TGGATTACACCACTCAATTTCAGTACAAGCGTGAATACGTCGACCGTCAC
ATTGCCCCTACCGTGATTCAGGAGTATACTGGTTCTGAAATGAAGCGGGT
TAATGCGCTAGCCTTGCAGTTTTCTATGCTGGACTCTGATCCGATGAACA
GTGATGCCAAGAATCGCTTTTGTACAATTGCTCCGAACAATGCCGCCCTC
TGTACATCGTTGATAAACGCCGCAAAGGCCACTATGCCAGTAGATATCAA
GCTGGATACCACGGTCACAGATATTGTTTTCGACGAAGAATCTAAAAAAT
ACAACATAACGTATTCCGAAGGAAATAGGGAGTCTTTTGATGGTGTAGTT
CTGTGTGCATCGACGAAGGAGGGAGAAATGACGATTGATACACCAGTTGG
AAATTCTTTATCAAACATGCTTGGATACGTTCGCGATGCCGAAACAGCAC
ATGAAGCAGCGAATGAACAATCCAGAGTTGAAGCTCCTGAGTGTAGCACC
ACAGCTGAACAAGACCCAGAAGAGGAGATTGTTCCATCTAGTTCGTGTTC
AAATGTAGCTGTTGTTGTAGGCAAAGCACAATCTTCCTTCTTCCGCTTTG
CTGACGAAAAGAAGATTCCAGACTGCATTGATGTGGTGAACGCGCCTGGG
TTCTCTCGTTTTGAACGTGTGCGAGAGATGTCGAGCGAAAAACCAGGGGT
TTACAAAATCATATGTGGGGAAAATTTTGTATCGTCGGGCTTGATTCATG
AAATGTTTGAAGAGGGTGCCCAGCTTAAGTACTTCGAGCCGATTGCGCGC
AATGCGTATTCAGTGTCTGTCCTTCCCCGTCAAAAGCATGTCGATGATTG
CATGCCATACCTAGTGCTTGGAACACATTTCATTTACGCCAAGGCTCTGC
GTCGCATTGCAAAACATCCGGAGATGGATGCTATAGCAGCCGTGAACTCG
GCAAGCCTGTTTTCGAAAGCCGTTCAATGGGGTTCCGAAAATGAAAAATC
TGAAGGCGGCGAGCAAGATGATGGTAATtgtgggttccaaaatgagtag