Gchil3450.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gchil3450.t1
Unique Name	Gchil3450.t1
Type	mRNA
Organism	Gracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length	367

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00004378_pilon	contig	tig00004378_pilon:184045..185145 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria chilensis NLEC103_M9 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	55529.EKX49692
Preferred name	KAE1
PFAMs	Peptidase_M22
Max annot lvl	2759\|Eukaryota
KEGG rclass	RC00070,RC00416
KEGG ko	ko:K01409,ko:K09487
KEGG Reaction	R10648
KEGG Pathway	ko04141,ko04151,ko04626,ko04657,ko04915,ko04918,ko05200,ko05215,ko05418,map04141,map04151,map04626,map04657,map04915,map04918,map05200,map05215,map05418
GOs	GO:0000408,GO:0000722,GO:0000723,GO:0002949,GO:0003674,GO:0003676,GO:0003677,GO:0003682,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005886,GO:0006139,GO:0006259,GO:0006310,GO:0006312,GO:0006355,GO:0006357,GO:0006396,GO:0006399,GO:0006400,GO:0006725,GO:0006807,GO:0006996,GO:0008033,GO:0008150,GO:0008152,GO:0009451,GO:0009889,GO:0009891,GO:0009893,GO:0009987,GO:0010467,GO:0010468,GO:0010556,GO:0010557,GO:0010604,GO:0010628,GO:0016020,GO:0016043,GO:0016070,GO:0016604,GO:0016607,GO:0019219,GO:0019222,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0031490,GO:0031974,GO:0031981,GO:0032200,GO:0032991,GO:0034470,GO:0034641,GO:0034660,GO:0042592,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043412,GO:0044237,GO:0044238,GO:0044260,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044451,GO:0044464,GO:0045893,GO:0045935,GO:0045944,GO:0046483,GO:0048518,GO:0048522,GO:0050789,GO:0050794,GO:0051171,GO:0051173,GO:0051252,GO:0051254,GO:0051276,GO:0060249,GO:0060255,GO:0065007,GO:0065008,GO:0070013,GO:0070525,GO:0071704,GO:0071840,GO:0071944,GO:0080090,GO:0090304,GO:0097159,GO:1901360,GO:1901363,GO:1902680,GO:1903506,GO:1903508,GO:2000112,GO:2001141
Evalue	6.59e-167
EggNOG OGs	COG0533@1\|root,KOG2708@2759\|Eukaryota
EC	2.3.1.234
Description	N(6)-L-threonylcarbamoyladenine synthase activity
COG category	O
BRITE	ko00000,ko00001,ko01000,ko03016,ko03110

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gchil3450	Gchil3450	Gracilaria chilensis NLEC103_M9 male	gene	tig00004378_pilon 184045..185145 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil3450.t1.start1	Gchil3450.t1.start1	Gracilaria chilensis NLEC103_M9 male	start_codon	tig00004378_pilon 184045..184047 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil3450.t1.CDS1	Gchil3450.t1.CDS1	Gracilaria chilensis NLEC103_M9 male	CDS	tig00004378_pilon 184045..185145 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil3450.t1.exon1	Gchil3450.t1.exon1	Gracilaria chilensis NLEC103_M9 male	exon	tig00004378_pilon 184045..185145 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil3450.t1.stop1	Gchil3450.t1.stop1	Gracilaria chilensis NLEC103_M9 male	stop_codon	tig00004378_pilon 185143..185145 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil3450.t1	Gchil3450.t1	Gracilaria chilensis NLEC103_M9 male	polypeptide	tig00004378_pilon 184045..185145 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00004378_pilon:184045..185145+
coding sequence from alignment at tig00004378_pilon:184045..185145+

mRNA sequence

>Gchil3450.t1 ID=Gchil3450.t1|Name=Gchil3450.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=367bp
MVAPSADDAKLDAKRDAKLESTPSKQYILGMEGSANKIGIAVVTTDGCIL
SNVRQTFVPPTGHGFLPRETAAHHQKHVVPLISRALSQARVTPNQIMCIG
YTKGPGMGAPLRSVAVAARTVSLLWDCPLVPVNHCVAHIEMGRLVTGSTN
PVVLYVSGGNTQVIAYAHNRYRIFGETIDIAVGNCLDRFARVVGLPNDPS
PGYNIEQAAKRAHVKNPKFMQLPYVVKGMDVSFSGLLSFIECEAKKALSE
GTFTVEDLCFSLQETVFAMLVEVTERAMAHCGHSDVLCVGGVGCNVRLQQ
MLSDMASERGGRAFCTDERFCIDNGAMVAWTAALMFQAGGAVVPIADATC
TQRFRTDDVYVNWRDD*

spliced messenger RNA

>Gchil3450.t1 ID=Gchil3450.t1|Name=Gchil3450.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1101bp|location=Sequence derived from alignment at tig00004378_pilon:184045..185145+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGTCGCCCCCTCAGCTGACGATGCCAAACTCGATGCCAAACGCGATGC
CAAACTCGAGTCCACCCCGTCTAAGCAGTACATCCTCGGCATGGAGGGCA
GTGCCAACAAGATTGGCATCGCCGTCGTCACCACCGACGGATGCATCCTA
TCAAACGTGCGCCAAACATTTGTCCCTCCCACCGGCCACGGCTTCCTTCC
CCGCGAAACCGCAGCGCATCACCAAAAGCACGTAGTTCCTCTTATATCTC
GCGCGCTATCCCAAGCACGCGTCACACCCAACCAAATCATGTGCATAGGC
TACACAAAGGGGCCGGGCATGGGTGCCCCGTTGAGGTCTGTTGCCGTTGC
CGCCCGTACCGTCTCTTTGCTCTGGGACTGTCCCCTCGTGCCGGTCAATC
ATTGCGTTGCGCACATCGAAATGGGTAGGCTTGTTACTGGCTCGACAAAC
CCCGTCGTGCTGTATGTTTCGGGCGGCAACACGCAGGTCATCGCCTATGC
GCACAATCGTTACCGCATCTTTGGAGAAACCATCGACATTGCGGTGGGGA
ACTGTCTCGATCGCTTTGCTCGCGTCGTTGGCCTTCCAAACGATCCTTCG
CCAGGCTACAATATAGAGCAAGCCGCAAAAAGGGCTCACGTGAAAAATCC
AAAGTTTATGCAGCTTCCCTACGTTGTCAAGGGAATGGACGTCTCCTTTT
CTGGTTTACTATCCTTTATTGAATGCGAGGCGAAAAAAGCGCTGTCAGAG
GGAACATTTACTGTCGAAGACCTGTGCTTCAGTCTTCAAGAAACCGTTTT
TGCAATGTTAGTGGAGGTCACGGAACGCGCAATGGCCCATTGTGGTCACA
GCGACGTGCTTTGTGTTGGTGGAGTTGGTTGCAATGTCAGATTGCAACAA
ATGCTCAGCGATATGGCATCCGAGCGAGGTGGCCGCGCCTTCTGCACCGA
TGAGCGCTTTTGCATCGACAATGGCGCCATGGTTGCCTGGACTGCAGCGC
TCATGTTCCAAGCAGGCGGTGCTGTTGTCCCAATCGCTGACGCTACCTGC
ACCCAGCGTTTTCGCACTGATGACGTCTACGTCAATTGGAGAGATGACTA
G

protein sequence of Gchil3450.t1

>Gchil3450.t1 ID=Gchil3450.t1|Name=Gchil3450.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=367bp
MVAPSADDAKLDAKRDAKLESTPSKQYILGMEGSANKIGIAVVTTDGCIL
SNVRQTFVPPTGHGFLPRETAAHHQKHVVPLISRALSQARVTPNQIMCIG
YTKGPGMGAPLRSVAVAARTVSLLWDCPLVPVNHCVAHIEMGRLVTGSTN
PVVLYVSGGNTQVIAYAHNRYRIFGETIDIAVGNCLDRFARVVGLPNDPS
PGYNIEQAAKRAHVKNPKFMQLPYVVKGMDVSFSGLLSFIECEAKKALSE
GTFTVEDLCFSLQETVFAMLVEVTERAMAHCGHSDVLCVGGVGCNVRLQQ
MLSDMASERGGRAFCTDERFCIDNGAMVAWTAALMFQAGGAVVPIADATC
TQRFRTDDVYVNWRDD*

mRNA from alignment at tig00004378_pilon:184045..185145+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gchil3450.t1 ID=Gchil3450.t1|Name=Gchil3450.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1101bp|location=Sequence derived from alignment at tig00004378_pilon:184045..185145+ (Gracilaria chilensis NLEC103_M9 male)
ATGGTCGCCCCCTCAGCTGACGATGCCAAACTCGATGCCAAACGCGATGC
CAAACTCGAGTCCACCCCGTCTAAGCAGTACATCCTCGGCATGGAGGGCA
GTGCCAACAAGATTGGCATCGCCGTCGTCACCACCGACGGATGCATCCTA
TCAAACGTGCGCCAAACATTTGTCCCTCCCACCGGCCACGGCTTCCTTCC
CCGCGAAACCGCAGCGCATCACCAAAAGCACGTAGTTCCTCTTATATCTC
GCGCGCTATCCCAAGCACGCGTCACACCCAACCAAATCATGTGCATAGGC
TACACAAAGGGGCCGGGCATGGGTGCCCCGTTGAGGTCTGTTGCCGTTGC
CGCCCGTACCGTCTCTTTGCTCTGGGACTGTCCCCTCGTGCCGGTCAATC
ATTGCGTTGCGCACATCGAAATGGGTAGGCTTGTTACTGGCTCGACAAAC
CCCGTCGTGCTGTATGTTTCGGGCGGCAACACGCAGGTCATCGCCTATGC
GCACAATCGTTACCGCATCTTTGGAGAAACCATCGACATTGCGGTGGGGA
ACTGTCTCGATCGCTTTGCTCGCGTCGTTGGCCTTCCAAACGATCCTTCG
CCAGGCTACAATATAGAGCAAGCCGCAAAAAGGGCTCACGTGAAAAATCC
AAAGTTTATGCAGCTTCCCTACGTTGTCAAGGGAATGGACGTCTCCTTTT
CTGGTTTACTATCCTTTATTGAATGCGAGGCGAAAAAAGCGCTGTCAGAG
GGAACATTTACTGTCGAAGACCTGTGCTTCAGTCTTCAAGAAACCGTTTT
TGCAATGTTAGTGGAGGTCACGGAACGCGCAATGGCCCATTGTGGTCACA
GCGACGTGCTTTGTGTTGGTGGAGTTGGTTGCAATGTCAGATTGCAACAA
ATGCTCAGCGATATGGCATCCGAGCGAGGTGGCCGCGCCTTCTGCACCGA
TGAGCGCTTTTGCATCGACAATGGCGCCATGGTTGCCTGGACTGCAGCGC
TCATGTTCCAAGCAGGCGGTGCTGTTGTCCCAATCGCTGACGCTACCTGC
ACCCAGCGTTTTCGCACTGATGACGTCTACGTCAATTGGAGAGATGACTA
G

Coding sequence (CDS) from alignment at tig00004378_pilon:184045..185145+

>Gchil3450.t1 ID=Gchil3450.t1|Name=Gchil3450.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1101bp|location=Sequence derived from alignment at tig00004378_pilon:184045..185145+ (Gracilaria chilensis NLEC103_M9 male)
ATGGTCGCCCCCTCAGCTGACGATGCCAAACTCGATGCCAAACGCGATGC
CAAACTCGAGTCCACCCCGTCTAAGCAGTACATCCTCGGCATGGAGGGCA
GTGCCAACAAGATTGGCATCGCCGTCGTCACCACCGACGGATGCATCCTA
TCAAACGTGCGCCAAACATTTGTCCCTCCCACCGGCCACGGCTTCCTTCC
CCGCGAAACCGCAGCGCATCACCAAAAGCACGTAGTTCCTCTTATATCTC
GCGCGCTATCCCAAGCACGCGTCACACCCAACCAAATCATGTGCATAGGC
TACACAAAGGGGCCGGGCATGGGTGCCCCGTTGAGGTCTGTTGCCGTTGC
CGCCCGTACCGTCTCTTTGCTCTGGGACTGTCCCCTCGTGCCGGTCAATC
ATTGCGTTGCGCACATCGAAATGGGTAGGCTTGTTACTGGCTCGACAAAC
CCCGTCGTGCTGTATGTTTCGGGCGGCAACACGCAGGTCATCGCCTATGC
GCACAATCGTTACCGCATCTTTGGAGAAACCATCGACATTGCGGTGGGGA
ACTGTCTCGATCGCTTTGCTCGCGTCGTTGGCCTTCCAAACGATCCTTCG
CCAGGCTACAATATAGAGCAAGCCGCAAAAAGGGCTCACGTGAAAAATCC
AAAGTTTATGCAGCTTCCCTACGTTGTCAAGGGAATGGACGTCTCCTTTT
CTGGTTTACTATCCTTTATTGAATGCGAGGCGAAAAAAGCGCTGTCAGAG
GGAACATTTACTGTCGAAGACCTGTGCTTCAGTCTTCAAGAAACCGTTTT
TGCAATGTTAGTGGAGGTCACGGAACGCGCAATGGCCCATTGTGGTCACA
GCGACGTGCTTTGTGTTGGTGGAGTTGGTTGCAATGTCAGATTGCAACAA
ATGCTCAGCGATATGGCATCCGAGCGAGGTGGCCGCGCCTTCTGCACCGA
TGAGCGCTTTTGCATCGACAATGGCGCCATGGTTGCCTGGACTGCAGCGC
TCATGTTCCAAGCAGGCGGTGCTGTTGTCCCAATCGCTGACGCTACCTGC
ACCCAGCGTTTTCGCACTGATGACGTCTACGTCAATTGGAGAGATGACTA
G