Gchil3445.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil3445.t1
Unique NameGchil3445.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length463
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004378_piloncontigtig00004378_pilon:177638..179026 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog45157.CMR015CT
Preferred nameSQD2
PFAMsGlyco_trans_1_4,Glyco_transf_4,Glycos_transf_1
Max annot lvl2759|Eukaryota
KEGG rclassRC00005,RC00059
KEGG koko:K06119
KEGG ReactionR06867
KEGG Pathwayko00561,ko01100,map00561,map01100
GOsGO:0000030,GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006082,GO:0006629,GO:0006643,GO:0006664,GO:0006790,GO:0006950,GO:0007154,GO:0008150,GO:0008152,GO:0008194,GO:0008610,GO:0009058,GO:0009247,GO:0009267,GO:0009507,GO:0009526,GO:0009536,GO:0009605,GO:0009941,GO:0009987,GO:0009991,GO:0016036,GO:0016740,GO:0016757,GO:0016758,GO:0031667,GO:0031668,GO:0031669,GO:0031967,GO:0031975,GO:0033554,GO:0042594,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0044272,GO:0044281,GO:0044422,GO:0044424,GO:0044434,GO:0044435,GO:0044444,GO:0044446,GO:0044464,GO:0046467,GO:0046505,GO:0046506,GO:0050896,GO:0051716,GO:0070085,GO:0071496,GO:0071704,GO:0097502,GO:1901135,GO:1901137,GO:1901576,GO:1903509
Evalue3.9e-159
EggNOG OGsCOG0438@1|root,KOG1111@2759|Eukaryota
Descriptionphosphatidylinositol N-acetylglucosaminyltransferase activity
COG categoryM
CAZyGT4
BiGG ReactioniRC1080.CRv4_Au5_s1_g1736_t1
BRITEko00000,ko00001,ko01000,ko01003
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil3445Gchil3445Gracilaria chilensis NLEC103_M9 malegenetig00004378_pilon 177638..179026 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3445.t1.start1Gchil3445.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004378_pilon 177638..177640 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3445.t1.CDS1Gchil3445.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004378_pilon 177638..179026 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3445.t1.exon1Gchil3445.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004378_pilon 177638..179026 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3445.t1.stop1Gchil3445.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004378_pilon 179024..179026 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3445.t1Gchil3445.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004378_pilon 177638..179026 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil3445.t1 ID=Gchil3445.t1|Name=Gchil3445.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=463bp
MRARVYARADTGTTREEAVAAATARHSYAVASGENLQLAATPPRRVALLV
EPSPFTHTSGYSNRFKNLIVQLRAAGDDVLVIVPDNDPLAPTEFEGATIV
NVPGFRFPLYRRITLTLGLRGVYRALKRFDPDVIHLTTPGFLIFATLLYA
RLLRKALLLSYHTHLPIYAKDYGLGSLQRAVWTMLRLQHNRADFTLTTSP
QLCEELVRNGFQRVGLWRKGIDTVIFNPRFSSPAMRYRLTAGNPHQPLLI
YVGRIGAEKNLIFFKQLMRRFSHCRLALVGDGPHKRTLQRELADTNTLFT
GILHGDELSSAFASADVFVMPSESETLGFVVLESMASGVPVVGADAGGIP
DIITHGVNGFLFAPGSQEQCGERVQQLLSDSALRKRMGRQAREEALKWSW
EASAAATRNVGYGRAISNFKYRAMGGLGLPRSLTWLRWVRVKLAIIKRRL
FGRLMVAFNATQ*
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spliced messenger RNA

>Gchil3445.t1 ID=Gchil3445.t1|Name=Gchil3445.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1389bp|location=Sequence derived from alignment at tig00004378_pilon:177638..179026+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGcgcgcccgcgtctacgcccgcgccgacaccggcaccacgcgTGAGGA
GGCCGTTGCCGCCGCCACCGCCCGTCACTCCTACGCCGTTGCCTCCGGCG
AAAACCTCCAGTTGGCTGCCACCCCGCCGCGTCGCGTCGCCCTGCTCGTC
GAGCCCTCGCCCTTCACCCACACCTCGGGCTACTCCAACCGTTTCAAAAA
CCTCATCGTGCAGCTGCGCGCCGCCGGCGACGACGTGCTCGTCATTGTGC
CGGACAACGACCCGCTCGCCCCCACTGAGTTTGAGGGCGCCACCATTGTG
AACGTTCCTGGCTTCCGATTCCCGCTCTATCGCCGCATCACCCTCACCCT
TGGCCTGCGCGGCGTGTATCGCGCCCTCAAGCGCTTTGACCCGGATGTCA
TCCATCTCACCACCCCGGGCTTTCTCATCTTTGCAACCCTGCTGTACGCC
CGTTTGCTGCGCAAGGCGCTGTTGCTCAGCTATCACACTCATCTCCCCAT
CTATGCCAAGGACTACGGCCTGGGCTCGTTGCAGCGCGCCGTGTGGACCA
TGCTGCGTCTACAGCACAACCGCGCCGATTTCACCCTCACCACCTCCCCG
CAGCTGTGTGAGGAGCTTGTGCGCAACGGCTTTCAACGCGTCGGCCTGTG
GCGCAAGGGCATTGACACCGTAATCTTCAACCCGCGTTTCAGCTCCCCCG
CCATGCGCTACCGCCTCACCGCAGGCAACCCGCACCAGCCGTTGCTCATC
TACGTTGGCCGCATTGGTGCCGAGAAGAACCTCATCTTCTTCAAACAACT
CATGCGTCGCTTCTCTCACTGCCGCCTCGCCCTCGTAGGAGACGGCCCGC
ACAAGCGCACGCTGCAGCGCGAGCTGGCCGATACCAACACTTTATTCACC
GGCATTCTGCACGGCGACGAACTTAGCAGCGCCTTTGCGTCGGCCGATGT
GTTCGTCATGCCCTCCGAGTCCGAGACGCTCGGCTTTGTCGTGTTGGAAA
GCATGGCCTCCGGCGTACCCGTCGTCGGCGCCGACGCCGGCGGCATTCCG
GATATTATCACCCACGGCGTCAATGGCTTTCTGTTTGCGCCCGGCAGCCA
GGAGCAGTGTGGCGAGCGCGTGCAGCAGCTGTTGAGCGACAGCGCGCTGC
GGAAGCGCATGGGCCGTCAGGCTAGGGAGGAGGCTCTCAAGTGGTCGTGG
GAGGCGTCCGCCGCCGCTACGAGGAACGTTGGCTATGGCCGAGCCATCTC
CAACTTCAAGTACCGAGCTATGGGCGGCCTGGGGCTGCCGCGCTCGCTCA
CCTGGCTCAGGTGGGTGCGCGTCAAGCTGGCCATCATTAAGCGCCGCCTG
TTTGGCCGTCTCATGGTGGCCTTCAATGCCACTCAATAG
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protein sequence of Gchil3445.t1

>Gchil3445.t1 ID=Gchil3445.t1|Name=Gchil3445.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=463bp
MRARVYARADTGTTREEAVAAATARHSYAVASGENLQLAATPPRRVALLV
EPSPFTHTSGYSNRFKNLIVQLRAAGDDVLVIVPDNDPLAPTEFEGATIV
NVPGFRFPLYRRITLTLGLRGVYRALKRFDPDVIHLTTPGFLIFATLLYA
RLLRKALLLSYHTHLPIYAKDYGLGSLQRAVWTMLRLQHNRADFTLTTSP
QLCEELVRNGFQRVGLWRKGIDTVIFNPRFSSPAMRYRLTAGNPHQPLLI
YVGRIGAEKNLIFFKQLMRRFSHCRLALVGDGPHKRTLQRELADTNTLFT
GILHGDELSSAFASADVFVMPSESETLGFVVLESMASGVPVVGADAGGIP
DIITHGVNGFLFAPGSQEQCGERVQQLLSDSALRKRMGRQAREEALKWSW
EASAAATRNVGYGRAISNFKYRAMGGLGLPRSLTWLRWVRVKLAIIKRRL
FGRLMVAFNATQ*
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mRNA from alignment at tig00004378_pilon:177638..179026+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil3445.t1 ID=Gchil3445.t1|Name=Gchil3445.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1389bp|location=Sequence derived from alignment at tig00004378_pilon:177638..179026+ (Gracilaria chilensis NLEC103_M9 male)
ATGcgcgcccgcgtctacgcccgcgccgacaccggcaccacgcgTGAGGA
GGCCGTTGCCGCCGCCACCGCCCGTCACTCCTACGCCGTTGCCTCCGGCG
AAAACCTCCAGTTGGCTGCCACCCCGCCGCGTCGCGTCGCCCTGCTCGTC
GAGCCCTCGCCCTTCACCCACACCTCGGGCTACTCCAACCGTTTCAAAAA
CCTCATCGTGCAGCTGCGCGCCGCCGGCGACGACGTGCTCGTCATTGTGC
CGGACAACGACCCGCTCGCCCCCACTGAGTTTGAGGGCGCCACCATTGTG
AACGTTCCTGGCTTCCGATTCCCGCTCTATCGCCGCATCACCCTCACCCT
TGGCCTGCGCGGCGTGTATCGCGCCCTCAAGCGCTTTGACCCGGATGTCA
TCCATCTCACCACCCCGGGCTTTCTCATCTTTGCAACCCTGCTGTACGCC
CGTTTGCTGCGCAAGGCGCTGTTGCTCAGCTATCACACTCATCTCCCCAT
CTATGCCAAGGACTACGGCCTGGGCTCGTTGCAGCGCGCCGTGTGGACCA
TGCTGCGTCTACAGCACAACCGCGCCGATTTCACCCTCACCACCTCCCCG
CAGCTGTGTGAGGAGCTTGTGCGCAACGGCTTTCAACGCGTCGGCCTGTG
GCGCAAGGGCATTGACACCGTAATCTTCAACCCGCGTTTCAGCTCCCCCG
CCATGCGCTACCGCCTCACCGCAGGCAACCCGCACCAGCCGTTGCTCATC
TACGTTGGCCGCATTGGTGCCGAGAAGAACCTCATCTTCTTCAAACAACT
CATGCGTCGCTTCTCTCACTGCCGCCTCGCCCTCGTAGGAGACGGCCCGC
ACAAGCGCACGCTGCAGCGCGAGCTGGCCGATACCAACACTTTATTCACC
GGCATTCTGCACGGCGACGAACTTAGCAGCGCCTTTGCGTCGGCCGATGT
GTTCGTCATGCCCTCCGAGTCCGAGACGCTCGGCTTTGTCGTGTTGGAAA
GCATGGCCTCCGGCGTACCCGTCGTCGGCGCCGACGCCGGCGGCATTCCG
GATATTATCACCCACGGCGTCAATGGCTTTCTGTTTGCGCCCGGCAGCCA
GGAGCAGTGTGGCGAGCGCGTGCAGCAGCTGTTGAGCGACAGCGCGCTGC
GGAAGCGCATGGGCCGTCAGGCTAGGGAGGAGGCTCTCAAGTGGTCGTGG
GAGGCGTCCGCCGCCGCTACGAGGAACGTTGGCTATGGCCGAGCCATCTC
CAACTTCAAGTACCGAGCTATGGGCGGCCTGGGGCTGCCGCGCTCGCTCA
CCTGGCTCAGGTGGGTGCGCGTCAAGCTGGCCATCATTAAGCGCCGCCTG
TTTGGCCGTCTCATGGTGGCCTTCAATGCCACTCAATAG
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Coding sequence (CDS) from alignment at tig00004378_pilon:177638..179026+

>Gchil3445.t1 ID=Gchil3445.t1|Name=Gchil3445.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1389bp|location=Sequence derived from alignment at tig00004378_pilon:177638..179026+ (Gracilaria chilensis NLEC103_M9 male)
ATGcgcgcccgcgtctacgcccgcgccgacaccggcaccacgcgTGAGGA
GGCCGTTGCCGCCGCCACCGCCCGTCACTCCTACGCCGTTGCCTCCGGCG
AAAACCTCCAGTTGGCTGCCACCCCGCCGCGTCGCGTCGCCCTGCTCGTC
GAGCCCTCGCCCTTCACCCACACCTCGGGCTACTCCAACCGTTTCAAAAA
CCTCATCGTGCAGCTGCGCGCCGCCGGCGACGACGTGCTCGTCATTGTGC
CGGACAACGACCCGCTCGCCCCCACTGAGTTTGAGGGCGCCACCATTGTG
AACGTTCCTGGCTTCCGATTCCCGCTCTATCGCCGCATCACCCTCACCCT
TGGCCTGCGCGGCGTGTATCGCGCCCTCAAGCGCTTTGACCCGGATGTCA
TCCATCTCACCACCCCGGGCTTTCTCATCTTTGCAACCCTGCTGTACGCC
CGTTTGCTGCGCAAGGCGCTGTTGCTCAGCTATCACACTCATCTCCCCAT
CTATGCCAAGGACTACGGCCTGGGCTCGTTGCAGCGCGCCGTGTGGACCA
TGCTGCGTCTACAGCACAACCGCGCCGATTTCACCCTCACCACCTCCCCG
CAGCTGTGTGAGGAGCTTGTGCGCAACGGCTTTCAACGCGTCGGCCTGTG
GCGCAAGGGCATTGACACCGTAATCTTCAACCCGCGTTTCAGCTCCCCCG
CCATGCGCTACCGCCTCACCGCAGGCAACCCGCACCAGCCGTTGCTCATC
TACGTTGGCCGCATTGGTGCCGAGAAGAACCTCATCTTCTTCAAACAACT
CATGCGTCGCTTCTCTCACTGCCGCCTCGCCCTCGTAGGAGACGGCCCGC
ACAAGCGCACGCTGCAGCGCGAGCTGGCCGATACCAACACTTTATTCACC
GGCATTCTGCACGGCGACGAACTTAGCAGCGCCTTTGCGTCGGCCGATGT
GTTCGTCATGCCCTCCGAGTCCGAGACGCTCGGCTTTGTCGTGTTGGAAA
GCATGGCCTCCGGCGTACCCGTCGTCGGCGCCGACGCCGGCGGCATTCCG
GATATTATCACCCACGGCGTCAATGGCTTTCTGTTTGCGCCCGGCAGCCA
GGAGCAGTGTGGCGAGCGCGTGCAGCAGCTGTTGAGCGACAGCGCGCTGC
GGAAGCGCATGGGCCGTCAGGCTAGGGAGGAGGCTCTCAAGTGGTCGTGG
GAGGCGTCCGCCGCCGCTACGAGGAACGTTGGCTATGGCCGAGCCATCTC
CAACTTCAAGTACCGAGCTATGGGCGGCCTGGGGCTGCCGCGCTCGCTCA
CCTGGCTCAGGTGGGTGCGCGTCAAGCTGGCCATCATTAAGCGCCGCCTG
TTTGGCCGTCTCATGGTGGCCTTCAATGCCACTCAATAG
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