Gchil3444.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil3444.t1
Unique NameGchil3444.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length476
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004378_piloncontigtig00004378_pilon:175651..177078 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog4096.XP_009788825.1
PFAMsUCH
Max annot lvl35493|Streptophyta
KEGG koko:K11841
KEGG Pathwayko04139,map04139
Evalue2.9e-34
EggNOG OGsCOG5560@1|root,KOG1871@1|root,KOG1870@2759|Eukaryota,KOG1871@2759|Eukaryota,37KPQ@33090|Viridiplantae,3GERH@35493|Streptophyta,44H6H@71274|asterids
EC3.4.19.12
DescriptionUbiquitin carboxyl-terminal hydrolase
COG categoryO
BRITEko00000,ko00001,ko01000,ko01002,ko04121
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil3444Gchil3444Gracilaria chilensis NLEC103_M9 malegenetig00004378_pilon 175651..177078 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3444.t1.start1Gchil3444.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004378_pilon 175651..175653 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3444.t1.CDS1Gchil3444.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004378_pilon 175651..177078 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3444.t1.exon1Gchil3444.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004378_pilon 175651..177078 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3444.t1.stop1Gchil3444.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004378_pilon 177076..177078 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3444.t1Gchil3444.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004378_pilon 175651..177078 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil3444.t1 ID=Gchil3444.t1|Name=Gchil3444.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=476bp
MATVARVAPHMQFGTLTLEQWDATLSRRRPAATAACSSSSSSSSSSPRKE
QCDEQASPAMTNAGAAGADAGAAVATVSIATPTSLRPPRAPTWADRVASG
RAGVERPHQLPVRWEQMHEAKSTATADATTCTTATDDEKGRVEEVPRRRV
RGLVNCGNSCFINAVLQALMACEPFRRWLLTQRRDDAAAPLTAKFVRLAE
EMSEDDAGVAVEEEDAEEEDAEGVDAVVPDWMLDIFQPGTAHAGSQQDAE
EFLTYVLNALHEEQVGLRGGKAAHGRETDEEGWEEMTRGGRSVHIRGGGW
AASAVTEVFGGTLRGEVRRAGEKASVTREPFWTLSVDVEGGDGGVQHALQ
RYLAATEVQRGVQRVVSVCETPRVLVLQLKRFRHNGATGALEKTRRVLAL
AESLSLGAARYALRAVVTHQGRSLATGHYTCDVRAPPPSTSSCWLACDDA
RVLRVPLRAVLRRPAYLLFYCRAPN*
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spliced messenger RNA

>Gchil3444.t1 ID=Gchil3444.t1|Name=Gchil3444.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1428bp|location=Sequence derived from alignment at tig00004378_pilon:175651..177078+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCCACCGTCGCGCGCGTCGCGCCCCACATGCAATTCGGCACGCTCAC
GCTCGAGCAGTGGGACGCCACGCTATCGCGCCGTCGTCCCGCGGCGACGG
CGGCGTGTtcatcatcatcatcatcatcatcatcatcTCCGCGCAAGGAG
CAATGCGACGAACAAGCTTCGCCGGCTATGACGAAtgcaggtgctgcagg
tgcagacgcaggtgcggctgtagCCACTGTGAGTATAGCGACGCCCACGT
CGCTACGGCCACCGCGCGCGCCCACGTGGGCCGACCGCGTGGCGTCCGGG
CGCGCCGGCGTGGAGCGGCCGCACCAGCTGCCAGTGCGCTGGGAGCAGAT
GCACGAGGCGAAAAGCACGGCCACGGCGGACGCCACGACGTGCACCACCG
CGACAGACGATGAAAAGGGGCGGGTGGAGGAGGTGCCGCGACGGCGCGTG
CGCGGGCTGGTGAATTGTGGCAACTCATGTTTCATCAACGCGGTGCTTCA
GGCGTTGATGGCGTGTGAGCCGTTTCGACGATGGCTGCTGACGCAGCGGC
GGGATGACGCGGCGGCGCCGCTGACGGCAAAGTTCGTGCGTCTGGCAgag
gagatgagcgaagacgatgcgggggtggcggtggaggaggaagatgcgga
ggaggaagatgcagaggGCGTGGACGCAGTGGTGCCCGATTGGATGTTGG
ACATCTTTCAACCGGGAACGGCACATGCAGGGTCGCAGCAGGACGCGGAG
GAGTTTCTGACATACGTGCTGAACGCGCTGCACGAGGAGCAGGTGGGACT
GAGGGGGGGGAAGGCGGCACACGGACGCGAAACAGACGAAGAAGGATGGG
AGGAAATGACGCGCGGCGGGCGCAGCGTGCACATTCGCGGGGGAGGATGG
GCGGCCAGCGCAGTGACGGAGGTATTCGGAGGAACGCTACGAGGCGAGGT
GCGACGGGCGGGCGAGAAGGCGTCAGTAACGCGAGAGCCGTTCTGGACAC
TAAGCGTGGACGTGGAGGGGGGGGACGGCGGTGTGCAACACGCGCTACAA
CGGTATCTAGCGGCGACGGAGGTGCAGCGCGGAGTGCAACGCGTGGTGAG
CGTGTGCGAAACGCCGCGCGTGCTGGTGCTTCAGCTGAAACGCTTCCGGC
ACAACGGCGCCACGGGCGCGCTGGAGAAGACgcgccgcgtgctggcgctg
gcggagagcttgtcgctgggcgctgcgcgctatgcgctgCGTGCCGTCGT
CACTCATCAGGGCCGATCGCTGGCAACCGGCCACTACACGTGTGACGTGC
GCGCGCCGCCGCCGTCCACGTCGTCGTGCTGGCTGGCCTGCGATGACGCG
CGCGTGCTGCGCGTGCCGCTGCGCGCCGTGCTGCGCCGCCCGGCCTACTT
GCTCTTCTACTGCCGCGCCCCCAATTGA
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protein sequence of Gchil3444.t1

>Gchil3444.t1 ID=Gchil3444.t1|Name=Gchil3444.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=476bp
MATVARVAPHMQFGTLTLEQWDATLSRRRPAATAACSSSSSSSSSSPRKE
QCDEQASPAMTNAGAAGADAGAAVATVSIATPTSLRPPRAPTWADRVASG
RAGVERPHQLPVRWEQMHEAKSTATADATTCTTATDDEKGRVEEVPRRRV
RGLVNCGNSCFINAVLQALMACEPFRRWLLTQRRDDAAAPLTAKFVRLAE
EMSEDDAGVAVEEEDAEEEDAEGVDAVVPDWMLDIFQPGTAHAGSQQDAE
EFLTYVLNALHEEQVGLRGGKAAHGRETDEEGWEEMTRGGRSVHIRGGGW
AASAVTEVFGGTLRGEVRRAGEKASVTREPFWTLSVDVEGGDGGVQHALQ
RYLAATEVQRGVQRVVSVCETPRVLVLQLKRFRHNGATGALEKTRRVLAL
AESLSLGAARYALRAVVTHQGRSLATGHYTCDVRAPPPSTSSCWLACDDA
RVLRVPLRAVLRRPAYLLFYCRAPN*
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mRNA from alignment at tig00004378_pilon:175651..177078+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil3444.t1 ID=Gchil3444.t1|Name=Gchil3444.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1428bp|location=Sequence derived from alignment at tig00004378_pilon:175651..177078+ (Gracilaria chilensis NLEC103_M9 male)
ATGGCCACCGTCGCGCGCGTCGCGCCCCACATGCAATTCGGCACGCTCAC
GCTCGAGCAGTGGGACGCCACGCTATCGCGCCGTCGTCCCGCGGCGACGG
CGGCGTGTtcatcatcatcatcatcatcatcatcatcTCCGCGCAAGGAG
CAATGCGACGAACAAGCTTCGCCGGCTATGACGAAtgcaggtgctgcagg
tgcagacgcaggtgcggctgtagCCACTGTGAGTATAGCGACGCCCACGT
CGCTACGGCCACCGCGCGCGCCCACGTGGGCCGACCGCGTGGCGTCCGGG
CGCGCCGGCGTGGAGCGGCCGCACCAGCTGCCAGTGCGCTGGGAGCAGAT
GCACGAGGCGAAAAGCACGGCCACGGCGGACGCCACGACGTGCACCACCG
CGACAGACGATGAAAAGGGGCGGGTGGAGGAGGTGCCGCGACGGCGCGTG
CGCGGGCTGGTGAATTGTGGCAACTCATGTTTCATCAACGCGGTGCTTCA
GGCGTTGATGGCGTGTGAGCCGTTTCGACGATGGCTGCTGACGCAGCGGC
GGGATGACGCGGCGGCGCCGCTGACGGCAAAGTTCGTGCGTCTGGCAgag
gagatgagcgaagacgatgcgggggtggcggtggaggaggaagatgcgga
ggaggaagatgcagaggGCGTGGACGCAGTGGTGCCCGATTGGATGTTGG
ACATCTTTCAACCGGGAACGGCACATGCAGGGTCGCAGCAGGACGCGGAG
GAGTTTCTGACATACGTGCTGAACGCGCTGCACGAGGAGCAGGTGGGACT
GAGGGGGGGGAAGGCGGCACACGGACGCGAAACAGACGAAGAAGGATGGG
AGGAAATGACGCGCGGCGGGCGCAGCGTGCACATTCGCGGGGGAGGATGG
GCGGCCAGCGCAGTGACGGAGGTATTCGGAGGAACGCTACGAGGCGAGGT
GCGACGGGCGGGCGAGAAGGCGTCAGTAACGCGAGAGCCGTTCTGGACAC
TAAGCGTGGACGTGGAGGGGGGGGACGGCGGTGTGCAACACGCGCTACAA
CGGTATCTAGCGGCGACGGAGGTGCAGCGCGGAGTGCAACGCGTGGTGAG
CGTGTGCGAAACGCCGCGCGTGCTGGTGCTTCAGCTGAAACGCTTCCGGC
ACAACGGCGCCACGGGCGCGCTGGAGAAGACgcgccgcgtgctggcgctg
gcggagagcttgtcgctgggcgctgcgcgctatgcgctgCGTGCCGTCGT
CACTCATCAGGGCCGATCGCTGGCAACCGGCCACTACACGTGTGACGTGC
GCGCGCCGCCGCCGTCCACGTCGTCGTGCTGGCTGGCCTGCGATGACGCG
CGCGTGCTGCGCGTGCCGCTGCGCGCCGTGCTGCGCCGCCCGGCCTACTT
GCTCTTCTACTGCCGCGCCCCCAATTGA
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Coding sequence (CDS) from alignment at tig00004378_pilon:175651..177078+

>Gchil3444.t1 ID=Gchil3444.t1|Name=Gchil3444.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1428bp|location=Sequence derived from alignment at tig00004378_pilon:175651..177078+ (Gracilaria chilensis NLEC103_M9 male)
ATGGCCACCGTCGCGCGCGTCGCGCCCCACATGCAATTCGGCACGCTCAC
GCTCGAGCAGTGGGACGCCACGCTATCGCGCCGTCGTCCCGCGGCGACGG
CGGCGTGTtcatcatcatcatcatcatcatcatcatcTCCGCGCAAGGAG
CAATGCGACGAACAAGCTTCGCCGGCTATGACGAAtgcaggtgctgcagg
tgcagacgcaggtgcggctgtagCCACTGTGAGTATAGCGACGCCCACGT
CGCTACGGCCACCGCGCGCGCCCACGTGGGCCGACCGCGTGGCGTCCGGG
CGCGCCGGCGTGGAGCGGCCGCACCAGCTGCCAGTGCGCTGGGAGCAGAT
GCACGAGGCGAAAAGCACGGCCACGGCGGACGCCACGACGTGCACCACCG
CGACAGACGATGAAAAGGGGCGGGTGGAGGAGGTGCCGCGACGGCGCGTG
CGCGGGCTGGTGAATTGTGGCAACTCATGTTTCATCAACGCGGTGCTTCA
GGCGTTGATGGCGTGTGAGCCGTTTCGACGATGGCTGCTGACGCAGCGGC
GGGATGACGCGGCGGCGCCGCTGACGGCAAAGTTCGTGCGTCTGGCAgag
gagatgagcgaagacgatgcgggggtggcggtggaggaggaagatgcgga
ggaggaagatgcagaggGCGTGGACGCAGTGGTGCCCGATTGGATGTTGG
ACATCTTTCAACCGGGAACGGCACATGCAGGGTCGCAGCAGGACGCGGAG
GAGTTTCTGACATACGTGCTGAACGCGCTGCACGAGGAGCAGGTGGGACT
GAGGGGGGGGAAGGCGGCACACGGACGCGAAACAGACGAAGAAGGATGGG
AGGAAATGACGCGCGGCGGGCGCAGCGTGCACATTCGCGGGGGAGGATGG
GCGGCCAGCGCAGTGACGGAGGTATTCGGAGGAACGCTACGAGGCGAGGT
GCGACGGGCGGGCGAGAAGGCGTCAGTAACGCGAGAGCCGTTCTGGACAC
TAAGCGTGGACGTGGAGGGGGGGGACGGCGGTGTGCAACACGCGCTACAA
CGGTATCTAGCGGCGACGGAGGTGCAGCGCGGAGTGCAACGCGTGGTGAG
CGTGTGCGAAACGCCGCGCGTGCTGGTGCTTCAGCTGAAACGCTTCCGGC
ACAACGGCGCCACGGGCGCGCTGGAGAAGACgcgccgcgtgctggcgctg
gcggagagcttgtcgctgggcgctgcgcgctatgcgctgCGTGCCGTCGT
CACTCATCAGGGCCGATCGCTGGCAACCGGCCACTACACGTGTGACGTGC
GCGCGCCGCCGCCGTCCACGTCGTCGTGCTGGCTGGCCTGCGATGACGCG
CGCGTGCTGCGCGTGCCGCTGCGCGCCGTGCTGCGCCGCCCGGCCTACTT
GCTCTTCTACTGCCGCGCCCCCAATTGA
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