Gchil3440.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gchil3440.t1
Unique Name	Gchil3440.t1
Type	mRNA
Organism	Gracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length	706

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00004378_pilon	contig	tig00004378_pilon:144035..146152 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria chilensis NLEC103_M9 male OGS1.0	2022-05-09

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gchil3440	Gchil3440	Gracilaria chilensis NLEC103_M9 male	gene	tig00004378_pilon 144035..146152 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil3440.t1.start1	Gchil3440.t1.start1	Gracilaria chilensis NLEC103_M9 male	start_codon	tig00004378_pilon 144035..144037 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil3440.t1.CDS1	Gchil3440.t1.CDS1	Gracilaria chilensis NLEC103_M9 male	CDS	tig00004378_pilon 144035..146152 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil3440.t1.exon1	Gchil3440.t1.exon1	Gracilaria chilensis NLEC103_M9 male	exon	tig00004378_pilon 144035..146152 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil3440.t1.stop1	Gchil3440.t1.stop1	Gracilaria chilensis NLEC103_M9 male	stop_codon	tig00004378_pilon 146150..146152 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil3440.t1	Gchil3440.t1	Gracilaria chilensis NLEC103_M9 male	polypeptide	tig00004378_pilon 144035..146152 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00004378_pilon:144035..146152+
coding sequence from alignment at tig00004378_pilon:144035..146152+

mRNA sequence

>Gchil3440.t1 ID=Gchil3440.t1|Name=Gchil3440.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=706bp
MDDLLANLGATDGSVFDAQNVLGASFDLESGFMSSPQTTNLYPSDVPAHM
RPQNSEMDFLTEEEEKPVVNITPTATPPVAVKRENSQIQTAFAEPTGQQS
ESPESQNPIDVDRRRLRPIADNVVLESWRLVRSQRDFIAAVRRRLPRSTG
TTALEESSDQPGLPVLSSITKSEPMSLDKDGQEDLWGLPLASEGALLDAL
MIRLVNAEAPSMLLMKYLSYSLLSGLVSQNAVIATYLTWTTSTENVSVRV
MRRFAEFLVDIIPNYSFSNCGGDLFLEVKQLLNAFISVIRSTARSPEIAP
ALVQMLSHDRTIALVRSCLRRIPSMWDPLRAALAQLESAPPVEPGVPLNF
APQSAFAEASELRELVEKLQRGLCVGITSLEKILSSLSYLMLPKSDAPLP
AALNTPYAVTVQVFGNEVAGAIRELWSQKESQGGDVQHLYALVRATKPPT
PNHPQPDLPKYGLTRKVKACEAAVRFLSQKASSPGATDLWRGIWGGTQRL
QRIIRDGVPQVKNEITTETSALIVAMAVICVAALCLGPSLRVNDGNDGIE
TTDPEVVKREQEQNQHVEESIGELTAFAVNSLEAAATADETPVWRSFGVW
LLLLMSRCGTMLRASGCDHVRAVKVLRAWGGMPIGTQGPHVSHGTSAHKH
SQSGTGHQQSQSSSSLAQSEGLALFASSSALAIIDASDVSGSEETLRALC
DDVVQ*

spliced messenger RNA

>Gchil3440.t1 ID=Gchil3440.t1|Name=Gchil3440.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=2118bp|location=Sequence derived from alignment at tig00004378_pilon:144035..146152+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGACGATCTGCTCGCAAATTTGGGCGCCACTGATGGATCCGTGTTTGA
CGCTCAGAATGTCCTTGGAGCCTCGTTTGACTTGGAAAGCGGATTCATGT
CGTCTCCGCAGACCACTAATCTTTATCCTTCCGACGTTCCTGCTCACATG
CGTCCGCAGAACTCCGAAATGGACTTCCTAACTGAAGAAGAGGAGAAGCC
CGTTGTTAATATAACTCCTACAGCCACGCCGCCTGTCGCCGTCAAGCGTG
AAAACTCCCAGATTCAGACTGCATTCGCTGAGCCAACCGGTCAACAGTCT
GAGAGCCCCGAAAGCCAAAACCCAATTGACGTGGACCGCCGTCGATTGAG
ACCTATAGCAGATAATGTCGTATTAGAGAGCTGGAGATTAGTTCGCAGCC
AGCGAGATTTTATTGCAGCTGTGCGTAGAAGACTGCCGCGGAGCACCGGT
ACGACCGCTTTGGAGGAATCTTCTGATCAGCCTGGTCTTCCAGTATTGAG
CAGTATAACCAAGTCTGAGCCGATGAGTCTAGATAAAGACGGGCAGGAAG
ACTTGTGGGGGCTTCCCCTGGCCTCAGAGGGTGCGCTTTTAGATGCGCTT
ATGATCCGCCTTGTGAACGCCGAGGCACCTTCTATGCTCCTCATGAAGTA
CTTATCCTATTCGTTGCTTTCGGGTTTAGTGTCGCAGAACGCAGTTATTG
CAACCTACTTGACATGGACCACAAGCACAGAGAACGTTTCTGTTCGGGTC
ATGAGGAGGTTTGCCGAATTTCTGGTCGATATAATTCCCAACTACTCTTT
CTCTAACTGCGGTGGGGATCTTTTTTTGGAAGTGAAACAACTGCTCAACG
CCTTTATTTCGGTGATCAGATCTACAGCGAGGTCTCCAGAGATTGCACCC
GCCTTAGTACAGATGCTGAGCCATGACCGAACAATAGCTCTTGTGCGCTC
GTGTTTGCGAAGGATCCCTTCAATGTGGGATCCTCTGAGAGCAGCCCTTG
CTCAGCTTGAAAGCGCCCCTCCAGTGGAACCGGGAGTTCCACTCAATTTT
GCACCCCAGTCAGCGTTTGCGGAAGCAAGTGAACTGAGAGAGCTCGTCGA
AAAGCTGCAGCGTGGCCTTTGTGTCGGTATAACAAGTCTGGAAAAAATAT
TATCTTCTTTGAGCTACCTGATGCTTCCGAAATCAGATGCCCCACTACCA
GCCGCTCTGAATACCCCTTACGCTGTAACGGTTCAAGTGTTTGGGAATGA
AGTAGCGGGGGCAATAAGGGAACTATGGAGCCAAAAAGAAAGTCAAGGTG
GTGACGTTCAACACCTATATGCGCTTGTGCGTGCCACAAAACCGCCAACG
CCGAACCACCCACAGCCAGACCTGCCCAAGTATGGCTTAACACGAAAAGT
TAAAGCTTGCGAGGCCGCTGTTCGCTTTCTTTCTCAAAAAGCGTCTTCGC
CCGGTGCTACGGATTTGTGGCGAGGAATTTGGGGAGGCACGCAACGTCTG
CAGCGAATAATAAGGGATGGGGTTCCGCAAGTGAAGAATGAAATAACCAC
AGAAACGAGCGCATTGATTGTGGCCATGGCTGTGATTTGCGTTGCAGCAC
TATGCCTGGGTCCATCCTTAAGAGTGAACGATGGGAACGATGGGATCGAG
ACAACGGATCCTGAGGTGGTTAAACGAGAACAAGAGCAGAATCAACATGT
GGAAGAATCGATCGGTGAGCTAACGGCTTTTGCCGTAAACAGCCTTGAGG
CGGCTGCCACTGCCGATGAAACGCCCGTGTGGAGATCGTTTGGTGTCTGG
CTTTTACTGCTTATGTCCAGGTGCGGAACTATGTTAAGGGCTAGTGGCTG
TGACCATGTGAGAGCGGTTAAAGTGCTGCGAGCATGGGGTGGCATGCCAA
TCGGAACACAAGGACCTCATGTGTCACATGGAACAAGTGCACACAAGCAT
AGTCAAAGTGGCACCGGGCACCAACAATCGCAGAGCTCTTCATCTCTGGC
ACAATCGGAAGGACTTGCACTCTTTGCCTCGTCTTCTGCACTTGCTATCA
TTGATGCGTCAGATGTTTCAGGCTCTGAGGAAACGCTTCGCGCGCTTTGT
GACGACGTGGTGCAGTGA

protein sequence of Gchil3440.t1

>Gchil3440.t1 ID=Gchil3440.t1|Name=Gchil3440.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=706bp
MDDLLANLGATDGSVFDAQNVLGASFDLESGFMSSPQTTNLYPSDVPAHM
RPQNSEMDFLTEEEEKPVVNITPTATPPVAVKRENSQIQTAFAEPTGQQS
ESPESQNPIDVDRRRLRPIADNVVLESWRLVRSQRDFIAAVRRRLPRSTG
TTALEESSDQPGLPVLSSITKSEPMSLDKDGQEDLWGLPLASEGALLDAL
MIRLVNAEAPSMLLMKYLSYSLLSGLVSQNAVIATYLTWTTSTENVSVRV
MRRFAEFLVDIIPNYSFSNCGGDLFLEVKQLLNAFISVIRSTARSPEIAP
ALVQMLSHDRTIALVRSCLRRIPSMWDPLRAALAQLESAPPVEPGVPLNF
APQSAFAEASELRELVEKLQRGLCVGITSLEKILSSLSYLMLPKSDAPLP
AALNTPYAVTVQVFGNEVAGAIRELWSQKESQGGDVQHLYALVRATKPPT
PNHPQPDLPKYGLTRKVKACEAAVRFLSQKASSPGATDLWRGIWGGTQRL
QRIIRDGVPQVKNEITTETSALIVAMAVICVAALCLGPSLRVNDGNDGIE
TTDPEVVKREQEQNQHVEESIGELTAFAVNSLEAAATADETPVWRSFGVW
LLLLMSRCGTMLRASGCDHVRAVKVLRAWGGMPIGTQGPHVSHGTSAHKH
SQSGTGHQQSQSSSSLAQSEGLALFASSSALAIIDASDVSGSEETLRALC
DDVVQ*

mRNA from alignment at tig00004378_pilon:144035..146152+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gchil3440.t1 ID=Gchil3440.t1|Name=Gchil3440.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=2118bp|location=Sequence derived from alignment at tig00004378_pilon:144035..146152+ (Gracilaria chilensis NLEC103_M9 male)
ATGGACGATCTGCTCGCAAATTTGGGCGCCACTGATGGATCCGTGTTTGA
CGCTCAGAATGTCCTTGGAGCCTCGTTTGACTTGGAAAGCGGATTCATGT
CGTCTCCGCAGACCACTAATCTTTATCCTTCCGACGTTCCTGCTCACATG
CGTCCGCAGAACTCCGAAATGGACTTCCTAACTGAAGAAGAGGAGAAGCC
CGTTGTTAATATAACTCCTACAGCCACGCCGCCTGTCGCCGTCAAGCGTG
AAAACTCCCAGATTCAGACTGCATTCGCTGAGCCAACCGGTCAACAGTCT
GAGAGCCCCGAAAGCCAAAACCCAATTGACGTGGACCGCCGTCGATTGAG
ACCTATAGCAGATAATGTCGTATTAGAGAGCTGGAGATTAGTTCGCAGCC
AGCGAGATTTTATTGCAGCTGTGCGTAGAAGACTGCCGCGGAGCACCGGT
ACGACCGCTTTGGAGGAATCTTCTGATCAGCCTGGTCTTCCAGTATTGAG
CAGTATAACCAAGTCTGAGCCGATGAGTCTAGATAAAGACGGGCAGGAAG
ACTTGTGGGGGCTTCCCCTGGCCTCAGAGGGTGCGCTTTTAGATGCGCTT
ATGATCCGCCTTGTGAACGCCGAGGCACCTTCTATGCTCCTCATGAAGTA
CTTATCCTATTCGTTGCTTTCGGGTTTAGTGTCGCAGAACGCAGTTATTG
CAACCTACTTGACATGGACCACAAGCACAGAGAACGTTTCTGTTCGGGTC
ATGAGGAGGTTTGCCGAATTTCTGGTCGATATAATTCCCAACTACTCTTT
CTCTAACTGCGGTGGGGATCTTTTTTTGGAAGTGAAACAACTGCTCAACG
CCTTTATTTCGGTGATCAGATCTACAGCGAGGTCTCCAGAGATTGCACCC
GCCTTAGTACAGATGCTGAGCCATGACCGAACAATAGCTCTTGTGCGCTC
GTGTTTGCGAAGGATCCCTTCAATGTGGGATCCTCTGAGAGCAGCCCTTG
CTCAGCTTGAAAGCGCCCCTCCAGTGGAACCGGGAGTTCCACTCAATTTT
GCACCCCAGTCAGCGTTTGCGGAAGCAAGTGAACTGAGAGAGCTCGTCGA
AAAGCTGCAGCGTGGCCTTTGTGTCGGTATAACAAGTCTGGAAAAAATAT
TATCTTCTTTGAGCTACCTGATGCTTCCGAAATCAGATGCCCCACTACCA
GCCGCTCTGAATACCCCTTACGCTGTAACGGTTCAAGTGTTTGGGAATGA
AGTAGCGGGGGCAATAAGGGAACTATGGAGCCAAAAAGAAAGTCAAGGTG
GTGACGTTCAACACCTATATGCGCTTGTGCGTGCCACAAAACCGCCAACG
CCGAACCACCCACAGCCAGACCTGCCCAAGTATGGCTTAACACGAAAAGT
TAAAGCTTGCGAGGCCGCTGTTCGCTTTCTTTCTCAAAAAGCGTCTTCGC
CCGGTGCTACGGATTTGTGGCGAGGAATTTGGGGAGGCACGCAACGTCTG
CAGCGAATAATAAGGGATGGGGTTCCGCAAGTGAAGAATGAAATAACCAC
AGAAACGAGCGCATTGATTGTGGCCATGGCTGTGATTTGCGTTGCAGCAC
TATGCCTGGGTCCATCCTTAAGAGTGAACGATGGGAACGATGGGATCGAG
ACAACGGATCCTGAGGTGGTTAAACGAGAACAAGAGCAGAATCAACATGT
GGAAGAATCGATCGGTGAGCTAACGGCTTTTGCCGTAAACAGCCTTGAGG
CGGCTGCCACTGCCGATGAAACGCCCGTGTGGAGATCGTTTGGTGTCTGG
CTTTTACTGCTTATGTCCAGGTGCGGAACTATGTTAAGGGCTAGTGGCTG
TGACCATGTGAGAGCGGTTAAAGTGCTGCGAGCATGGGGTGGCATGCCAA
TCGGAACACAAGGACCTCATGTGTCACATGGAACAAGTGCACACAAGCAT
AGTCAAAGTGGCACCGGGCACCAACAATCGCAGAGCTCTTCATCTCTGGC
ACAATCGGAAGGACTTGCACTCTTTGCCTCGTCTTCTGCACTTGCTATCA
TTGATGCGTCAGATGTTTCAGGCTCTGAGGAAACGCTTCGCGCGCTTTGT
GACGACGTGGTGCAGTGA

Coding sequence (CDS) from alignment at tig00004378_pilon:144035..146152+

>Gchil3440.t1 ID=Gchil3440.t1|Name=Gchil3440.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=2118bp|location=Sequence derived from alignment at tig00004378_pilon:144035..146152+ (Gracilaria chilensis NLEC103_M9 male)
ATGGACGATCTGCTCGCAAATTTGGGCGCCACTGATGGATCCGTGTTTGA
CGCTCAGAATGTCCTTGGAGCCTCGTTTGACTTGGAAAGCGGATTCATGT
CGTCTCCGCAGACCACTAATCTTTATCCTTCCGACGTTCCTGCTCACATG
CGTCCGCAGAACTCCGAAATGGACTTCCTAACTGAAGAAGAGGAGAAGCC
CGTTGTTAATATAACTCCTACAGCCACGCCGCCTGTCGCCGTCAAGCGTG
AAAACTCCCAGATTCAGACTGCATTCGCTGAGCCAACCGGTCAACAGTCT
GAGAGCCCCGAAAGCCAAAACCCAATTGACGTGGACCGCCGTCGATTGAG
ACCTATAGCAGATAATGTCGTATTAGAGAGCTGGAGATTAGTTCGCAGCC
AGCGAGATTTTATTGCAGCTGTGCGTAGAAGACTGCCGCGGAGCACCGGT
ACGACCGCTTTGGAGGAATCTTCTGATCAGCCTGGTCTTCCAGTATTGAG
CAGTATAACCAAGTCTGAGCCGATGAGTCTAGATAAAGACGGGCAGGAAG
ACTTGTGGGGGCTTCCCCTGGCCTCAGAGGGTGCGCTTTTAGATGCGCTT
ATGATCCGCCTTGTGAACGCCGAGGCACCTTCTATGCTCCTCATGAAGTA
CTTATCCTATTCGTTGCTTTCGGGTTTAGTGTCGCAGAACGCAGTTATTG
CAACCTACTTGACATGGACCACAAGCACAGAGAACGTTTCTGTTCGGGTC
ATGAGGAGGTTTGCCGAATTTCTGGTCGATATAATTCCCAACTACTCTTT
CTCTAACTGCGGTGGGGATCTTTTTTTGGAAGTGAAACAACTGCTCAACG
CCTTTATTTCGGTGATCAGATCTACAGCGAGGTCTCCAGAGATTGCACCC
GCCTTAGTACAGATGCTGAGCCATGACCGAACAATAGCTCTTGTGCGCTC
GTGTTTGCGAAGGATCCCTTCAATGTGGGATCCTCTGAGAGCAGCCCTTG
CTCAGCTTGAAAGCGCCCCTCCAGTGGAACCGGGAGTTCCACTCAATTTT
GCACCCCAGTCAGCGTTTGCGGAAGCAAGTGAACTGAGAGAGCTCGTCGA
AAAGCTGCAGCGTGGCCTTTGTGTCGGTATAACAAGTCTGGAAAAAATAT
TATCTTCTTTGAGCTACCTGATGCTTCCGAAATCAGATGCCCCACTACCA
GCCGCTCTGAATACCCCTTACGCTGTAACGGTTCAAGTGTTTGGGAATGA
AGTAGCGGGGGCAATAAGGGAACTATGGAGCCAAAAAGAAAGTCAAGGTG
GTGACGTTCAACACCTATATGCGCTTGTGCGTGCCACAAAACCGCCAACG
CCGAACCACCCACAGCCAGACCTGCCCAAGTATGGCTTAACACGAAAAGT
TAAAGCTTGCGAGGCCGCTGTTCGCTTTCTTTCTCAAAAAGCGTCTTCGC
CCGGTGCTACGGATTTGTGGCGAGGAATTTGGGGAGGCACGCAACGTCTG
CAGCGAATAATAAGGGATGGGGTTCCGCAAGTGAAGAATGAAATAACCAC
AGAAACGAGCGCATTGATTGTGGCCATGGCTGTGATTTGCGTTGCAGCAC
TATGCCTGGGTCCATCCTTAAGAGTGAACGATGGGAACGATGGGATCGAG
ACAACGGATCCTGAGGTGGTTAAACGAGAACAAGAGCAGAATCAACATGT
GGAAGAATCGATCGGTGAGCTAACGGCTTTTGCCGTAAACAGCCTTGAGG
CGGCTGCCACTGCCGATGAAACGCCCGTGTGGAGATCGTTTGGTGTCTGG
CTTTTACTGCTTATGTCCAGGTGCGGAACTATGTTAAGGGCTAGTGGCTG
TGACCATGTGAGAGCGGTTAAAGTGCTGCGAGCATGGGGTGGCATGCCAA
TCGGAACACAAGGACCTCATGTGTCACATGGAACAAGTGCACACAAGCAT
AGTCAAAGTGGCACCGGGCACCAACAATCGCAGAGCTCTTCATCTCTGGC
ACAATCGGAAGGACTTGCACTCTTTGCCTCGTCTTCTGCACTTGCTATCA
TTGATGCGTCAGATGTTTCAGGCTCTGAGGAAACGCTTCGCGCGCTTTGT
GACGACGTGGTGCAGTGA