Gchil3433.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil3433.t1
Unique NameGchil3433.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length324
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004378_piloncontigtig00004378_pilon:126489..127460 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog4792.ETI38048
PFAMsMmp37
Max annot lvl4776|Peronosporales
KEGG koko:K17807
Evalue3.27e-49
EggNOG OGsKOG2986@1|root,KOG2986@2759|Eukaryota,3Q86G@4776|Peronosporales
DescriptionMitochondrial matrix Mmp37
COG categoryS
BRITEko00000,ko03029
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil3433Gchil3433Gracilaria chilensis NLEC103_M9 malegenetig00004378_pilon 126489..127460 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3433.t1.stop1Gchil3433.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004378_pilon 126489..126491 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3433.t1.CDS1Gchil3433.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004378_pilon 126489..127460 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3433.t1.exon1Gchil3433.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004378_pilon 126489..127460 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3433.t1.start1Gchil3433.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004378_pilon 127458..127460 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3433.t1Gchil3433.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004378_pilon 126489..127460 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil3433.t1 ID=Gchil3433.t1|Name=Gchil3433.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=324bp
MVHLAQSCVYPIDQAQHILASLPPASFAFAYGSAIIPQCNADPRSRMIDL
MLAVDDPCQWHTDNLYRNLSHYSIPAQVAGASFITRLQHAGASVYFNTML
PSRKAGFKYGVVSTASLITDLTEWNSLYVSGRLQKPVRVLTAAGPLLTDA
MRHNTEAAAAAALLTLPDSFDEHRFYTAVASLSYTKDVRMSMAVEARTKV
RDIVHANLQAFRTMYASCDTVRDVATRGRVWRRDVRADAQQRLLQRLPSR
IRNAVANHVGLDREQLPYVHTSCVANALLASIGAVVARSSVSQAVKGVAS
AGLTTSVRYVAAKIGKSIRSAWR*
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spliced messenger RNA

>Gchil3433.t1 ID=Gchil3433.t1|Name=Gchil3433.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=972bp|location=Sequence derived from alignment at tig00004378_pilon:126489..127460- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGTGCATCTTGCACAGTCGTGCGTGTACCCAATCGATCAGGCACAGCA
CATCCTCGCCTCATTGCCTCCAGCCTCCTTCGCTTTTGCCTATGGCTCAG
CCATCATTCCGCAGTGCAACGCTGATCCGCGCTCCCGCATGATCGACTTG
ATGCTCGCTGTGGATGATCCCTGTCAATGGCACACCGACAACCTCTATCG
CAACCTTAGCCACTACTCCATCCCGGCCCAGGTCGCCGGCGCTTCTTTCA
TCACTAGGCTGCAGCACGCCGGCGCCTCCGTGTACTTCAACACAATGCTG
CCTTCTCGTAAGGCAGGCTTCAAGTACGGCGTCGTCTCCACCGCCAGTCT
CATCACCGACTTAACGGAGTGGAACTCCTTGTATGTTTCGGGCCGTCTGC
AAAAGCCGGTTCGAGTGCTCACCGCCGCCGGACCGCTTCTCACCGATGCC
ATGCGCCATAACACTGAGGCTGCTGCCGCTGCTGCTCTGCTCACCCTGCC
AGACAGCTTTGACGAACACCGATTTTACACCGCGGTGGCATCGCTGTCCT
ACACTAAAGACGTGCGAATGTCCATGGCCGTCGAGGCCCGCACCAAGGTT
CGAGACATTGTCCACGCCAATCTGCAAGCCTTTCGTACTATGTATGCGTC
GTGTGATACCGTCAGAGACGTCGCTACAAGAGGTCGTGTGTGGAGACGAG
ACGTTCGAGCCGACGCACAACAAAGGCTATTACAAAGATTGCCCTCGAGA
ATTCGAAATGCCGTCGCCAACCACGTCGGGCTTGATCGTGAGCAGCTTCC
CTACGTGCATACCAGCTGTGTCGCCAATGCGCTGCTAGCGTCTATCGGAG
CCGTGGTAGCCAGGAGTAGTGTTAGCCAGGCTGTAAAAGGTGTCGCGTCT
GCAGGGCTCACTACCAGTGTCAGATATGTGGCTGCGAAGATTGGTAAATC
AATACGCTCTGCGTGGCGGTAG
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protein sequence of Gchil3433.t1

>Gchil3433.t1 ID=Gchil3433.t1|Name=Gchil3433.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=324bp
MVHLAQSCVYPIDQAQHILASLPPASFAFAYGSAIIPQCNADPRSRMIDL
MLAVDDPCQWHTDNLYRNLSHYSIPAQVAGASFITRLQHAGASVYFNTML
PSRKAGFKYGVVSTASLITDLTEWNSLYVSGRLQKPVRVLTAAGPLLTDA
MRHNTEAAAAAALLTLPDSFDEHRFYTAVASLSYTKDVRMSMAVEARTKV
RDIVHANLQAFRTMYASCDTVRDVATRGRVWRRDVRADAQQRLLQRLPSR
IRNAVANHVGLDREQLPYVHTSCVANALLASIGAVVARSSVSQAVKGVAS
AGLTTSVRYVAAKIGKSIRSAWR*
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mRNA from alignment at tig00004378_pilon:126489..127460-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil3433.t1 ID=Gchil3433.t1|Name=Gchil3433.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=972bp|location=Sequence derived from alignment at tig00004378_pilon:126489..127460- (Gracilaria chilensis NLEC103_M9 male)
ATGGTGCATCTTGCACAGTCGTGCGTGTACCCAATCGATCAGGCACAGCA
CATCCTCGCCTCATTGCCTCCAGCCTCCTTCGCTTTTGCCTATGGCTCAG
CCATCATTCCGCAGTGCAACGCTGATCCGCGCTCCCGCATGATCGACTTG
ATGCTCGCTGTGGATGATCCCTGTCAATGGCACACCGACAACCTCTATCG
CAACCTTAGCCACTACTCCATCCCGGCCCAGGTCGCCGGCGCTTCTTTCA
TCACTAGGCTGCAGCACGCCGGCGCCTCCGTGTACTTCAACACAATGCTG
CCTTCTCGTAAGGCAGGCTTCAAGTACGGCGTCGTCTCCACCGCCAGTCT
CATCACCGACTTAACGGAGTGGAACTCCTTGTATGTTTCGGGCCGTCTGC
AAAAGCCGGTTCGAGTGCTCACCGCCGCCGGACCGCTTCTCACCGATGCC
ATGCGCCATAACACTGAGGCTGCTGCCGCTGCTGCTCTGCTCACCCTGCC
AGACAGCTTTGACGAACACCGATTTTACACCGCGGTGGCATCGCTGTCCT
ACACTAAAGACGTGCGAATGTCCATGGCCGTCGAGGCCCGCACCAAGGTT
CGAGACATTGTCCACGCCAATCTGCAAGCCTTTCGTACTATGTATGCGTC
GTGTGATACCGTCAGAGACGTCGCTACAAGAGGTCGTGTGTGGAGACGAG
ACGTTCGAGCCGACGCACAACAAAGGCTATTACAAAGATTGCCCTCGAGA
ATTCGAAATGCCGTCGCCAACCACGTCGGGCTTGATCGTGAGCAGCTTCC
CTACGTGCATACCAGCTGTGTCGCCAATGCGCTGCTAGCGTCTATCGGAG
CCGTGGTAGCCAGGAGTAGTGTTAGCCAGGCTGTAAAAGGTGTCGCGTCT
GCAGGGCTCACTACCAGTGTCAGATATGTGGCTGCGAAGATTGGTAAATC
AATACGCTCTGCGTGGCGGTAG
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Coding sequence (CDS) from alignment at tig00004378_pilon:126489..127460-

>Gchil3433.t1 ID=Gchil3433.t1|Name=Gchil3433.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=972bp|location=Sequence derived from alignment at tig00004378_pilon:126489..127460- (Gracilaria chilensis NLEC103_M9 male)
ATGGTGCATCTTGCACAGTCGTGCGTGTACCCAATCGATCAGGCACAGCA
CATCCTCGCCTCATTGCCTCCAGCCTCCTTCGCTTTTGCCTATGGCTCAG
CCATCATTCCGCAGTGCAACGCTGATCCGCGCTCCCGCATGATCGACTTG
ATGCTCGCTGTGGATGATCCCTGTCAATGGCACACCGACAACCTCTATCG
CAACCTTAGCCACTACTCCATCCCGGCCCAGGTCGCCGGCGCTTCTTTCA
TCACTAGGCTGCAGCACGCCGGCGCCTCCGTGTACTTCAACACAATGCTG
CCTTCTCGTAAGGCAGGCTTCAAGTACGGCGTCGTCTCCACCGCCAGTCT
CATCACCGACTTAACGGAGTGGAACTCCTTGTATGTTTCGGGCCGTCTGC
AAAAGCCGGTTCGAGTGCTCACCGCCGCCGGACCGCTTCTCACCGATGCC
ATGCGCCATAACACTGAGGCTGCTGCCGCTGCTGCTCTGCTCACCCTGCC
AGACAGCTTTGACGAACACCGATTTTACACCGCGGTGGCATCGCTGTCCT
ACACTAAAGACGTGCGAATGTCCATGGCCGTCGAGGCCCGCACCAAGGTT
CGAGACATTGTCCACGCCAATCTGCAAGCCTTTCGTACTATGTATGCGTC
GTGTGATACCGTCAGAGACGTCGCTACAAGAGGTCGTGTGTGGAGACGAG
ACGTTCGAGCCGACGCACAACAAAGGCTATTACAAAGATTGCCCTCGAGA
ATTCGAAATGCCGTCGCCAACCACGTCGGGCTTGATCGTGAGCAGCTTCC
CTACGTGCATACCAGCTGTGTCGCCAATGCGCTGCTAGCGTCTATCGGAG
CCGTGGTAGCCAGGAGTAGTGTTAGCCAGGCTGTAAAAGGTGTCGCGTCT
GCAGGGCTCACTACCAGTGTCAGATATGTGGCTGCGAAGATTGGTAAATC
AATACGCTCTGCGTGGCGGTAG
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