Gchil3430.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil3430.t1
Unique NameGchil3430.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length396
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004378_piloncontigtig00004378_pilon:123005..124192 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog44056.XP_009033031.1
PFAMsGlycos_transf_2
Max annot lvl2759|Eukaryota
Evalue3.14e-39
EggNOG OGs2EQX0@1|root,2STUC@2759|Eukaryota
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil3430Gchil3430Gracilaria chilensis NLEC103_M9 malegenetig00004378_pilon 123005..124192 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3430.t1.stop1Gchil3430.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004378_pilon 123005..123007 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3430.t1.CDS1Gchil3430.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004378_pilon 123005..124192 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3430.t1.exon1Gchil3430.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004378_pilon 123005..124192 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3430.t1.start1Gchil3430.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004378_pilon 124190..124192 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3430.t1Gchil3430.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004378_pilon 123005..124192 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil3430.t1 ID=Gchil3430.t1|Name=Gchil3430.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=396bp
MVSHASRLSEPARNPRAPLVIFALLLAFRAQLYISSTFAGTRPSRTFTSA
SQIEENSWQICADILRNGLRDVGDASSVWLSHAYVGSNQYPVKDISQPSR
RYQCRCLFPQLHVNKQPLLAAIVQSFNHHGNIANISTSLKSSSLVQEIVI
SEDGSTDGSLHDWHAALPEPHHFIIRSNNLHELRSYNRAMRMSSADIVVL
LQDDDLLPPSDEWLKNAIRLFEALPDLGVLGGYIGQLWDHNTGQGYEYGE
QISTHGGLRQGNTKPLPFIEPTTKLPFTYAECVWVAPVFIRRELLRKAGG
LELTIAKRGEPGVWQDCVFSYEAWINGYTVGAYSAPFERGVGGHGSATST
IKVKQRERVYERAVAYTNRKYPRRRIHDSIIARNNQTLLPRAFAK*
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spliced messenger RNA

>Gchil3430.t1 ID=Gchil3430.t1|Name=Gchil3430.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1188bp|location=Sequence derived from alignment at tig00004378_pilon:123005..124192- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGTTTCGCACGCCTCTCGACTCTCAGAACCGGCTCGAAATCCGCGTGC
ACCTCTGGTCATCTTCGCCCTTCTTCTCGCTTTTCGAGCGCAGCTATACA
TCTCTTCCACCTTTGCTGGCACTAGACCCAGCCGCACTTTCACTTCTGCT
TCTCAGATTGAAGAGAACTCATGGCAGATCTGCGCCGACATATTACGAAA
TGGTCTGAGAGACGTGGGTGACGCCTCTTCTGTTTGGCTTAGTCATGCAT
ACGTCGGATCTAATCAATATCCTGTTAAGGACATTTCCCAGCCGTCAAGA
AGATATCAGTGTCGATGCCTGTTTCCTCAACTTCACGTCAACAAGCAACC
TTTGCTTGCTGCAATTGTTCAGAGTTTTAATCATCATGGTAATATTGCTA
ACATATCAACCAGTCTCAAGTCTTCTTCATTGGTTCAGGAGATTGTTATC
AGCGAAGATGGTTCCACGGATGGCTCTTTGCATGATTGGCATGCTGCCCT
TCCTGAGCCGCACCATTTTATTATTCGTTCAAACAATCTTCACGAATTGC
GCAGTTACAATCGTGCCATGCGAATGTCCTCTGCTGATATTGTTGTGCTG
CTACAAGATGATGATTTGCTACCACCCTCTGATGAATGGTTGAAAAACGC
AATCCGATTGTTCGAAGCATTACCCGATCTAGGCGTGTTGGGCGGTTACA
TTGGACAACTTTGGGATCATAACACTGGGCAAGGATATGAGTACGGAGAA
CAAATAAGCACACATGGTGGCTTGCGTCAAGGAAATACAAAGCCATTGCC
CTTCATAGAACCGACCACCAAACTACCTTTTACGTATGCTGAATGTGTGT
GGGTCGCACCAGTATTTATCAGAAGAGAATTACTTCGAAAGGCTGGTGGA
TTGGAGCTTACCATTGCCAAACGAGGAGAACCAGGTGTTTGGCAAGATTG
TGTTTTCAGTTACGAGGCATGGATAAATGGATACACCGTGGGCGCTTATT
CAGCTCCGTTTGAACGAGGAGTGGGAGGTCATGGTTCTGCAACGTCAACA
ATCAAAGTCAAACAAAGAGAACGGGTTTATGAAAGAGCAGTGGCATATAC
TAATCGCAAGTATCCCAGAAGAAGGATACACGATTCTATAATCGCGCGAA
ACAATCAGACATTGCTGCCTCGAGCGTTTGCCAAGTAA
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protein sequence of Gchil3430.t1

>Gchil3430.t1 ID=Gchil3430.t1|Name=Gchil3430.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=396bp
MVSHASRLSEPARNPRAPLVIFALLLAFRAQLYISSTFAGTRPSRTFTSA
SQIEENSWQICADILRNGLRDVGDASSVWLSHAYVGSNQYPVKDISQPSR
RYQCRCLFPQLHVNKQPLLAAIVQSFNHHGNIANISTSLKSSSLVQEIVI
SEDGSTDGSLHDWHAALPEPHHFIIRSNNLHELRSYNRAMRMSSADIVVL
LQDDDLLPPSDEWLKNAIRLFEALPDLGVLGGYIGQLWDHNTGQGYEYGE
QISTHGGLRQGNTKPLPFIEPTTKLPFTYAECVWVAPVFIRRELLRKAGG
LELTIAKRGEPGVWQDCVFSYEAWINGYTVGAYSAPFERGVGGHGSATST
IKVKQRERVYERAVAYTNRKYPRRRIHDSIIARNNQTLLPRAFAK*
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mRNA from alignment at tig00004378_pilon:123005..124192-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil3430.t1 ID=Gchil3430.t1|Name=Gchil3430.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1188bp|location=Sequence derived from alignment at tig00004378_pilon:123005..124192- (Gracilaria chilensis NLEC103_M9 male)
ATGGTTTCGCACGCCTCTCGACTCTCAGAACCGGCTCGAAATCCGCGTGC
ACCTCTGGTCATCTTCGCCCTTCTTCTCGCTTTTCGAGCGCAGCTATACA
TCTCTTCCACCTTTGCTGGCACTAGACCCAGCCGCACTTTCACTTCTGCT
TCTCAGATTGAAGAGAACTCATGGCAGATCTGCGCCGACATATTACGAAA
TGGTCTGAGAGACGTGGGTGACGCCTCTTCTGTTTGGCTTAGTCATGCAT
ACGTCGGATCTAATCAATATCCTGTTAAGGACATTTCCCAGCCGTCAAGA
AGATATCAGTGTCGATGCCTGTTTCCTCAACTTCACGTCAACAAGCAACC
TTTGCTTGCTGCAATTGTTCAGAGTTTTAATCATCATGGTAATATTGCTA
ACATATCAACCAGTCTCAAGTCTTCTTCATTGGTTCAGGAGATTGTTATC
AGCGAAGATGGTTCCACGGATGGCTCTTTGCATGATTGGCATGCTGCCCT
TCCTGAGCCGCACCATTTTATTATTCGTTCAAACAATCTTCACGAATTGC
GCAGTTACAATCGTGCCATGCGAATGTCCTCTGCTGATATTGTTGTGCTG
CTACAAGATGATGATTTGCTACCACCCTCTGATGAATGGTTGAAAAACGC
AATCCGATTGTTCGAAGCATTACCCGATCTAGGCGTGTTGGGCGGTTACA
TTGGACAACTTTGGGATCATAACACTGGGCAAGGATATGAGTACGGAGAA
CAAATAAGCACACATGGTGGCTTGCGTCAAGGAAATACAAAGCCATTGCC
CTTCATAGAACCGACCACCAAACTACCTTTTACGTATGCTGAATGTGTGT
GGGTCGCACCAGTATTTATCAGAAGAGAATTACTTCGAAAGGCTGGTGGA
TTGGAGCTTACCATTGCCAAACGAGGAGAACCAGGTGTTTGGCAAGATTG
TGTTTTCAGTTACGAGGCATGGATAAATGGATACACCGTGGGCGCTTATT
CAGCTCCGTTTGAACGAGGAGTGGGAGGTCATGGTTCTGCAACGTCAACA
ATCAAAGTCAAACAAAGAGAACGGGTTTATGAAAGAGCAGTGGCATATAC
TAATCGCAAGTATCCCAGAAGAAGGATACACGATTCTATAATCGCGCGAA
ACAATCAGACATTGCTGCCTCGAGCGTTTGCCAAGTAA
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Coding sequence (CDS) from alignment at tig00004378_pilon:123005..124192-

>Gchil3430.t1 ID=Gchil3430.t1|Name=Gchil3430.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1188bp|location=Sequence derived from alignment at tig00004378_pilon:123005..124192- (Gracilaria chilensis NLEC103_M9 male)
ATGGTTTCGCACGCCTCTCGACTCTCAGAACCGGCTCGAAATCCGCGTGC
ACCTCTGGTCATCTTCGCCCTTCTTCTCGCTTTTCGAGCGCAGCTATACA
TCTCTTCCACCTTTGCTGGCACTAGACCCAGCCGCACTTTCACTTCTGCT
TCTCAGATTGAAGAGAACTCATGGCAGATCTGCGCCGACATATTACGAAA
TGGTCTGAGAGACGTGGGTGACGCCTCTTCTGTTTGGCTTAGTCATGCAT
ACGTCGGATCTAATCAATATCCTGTTAAGGACATTTCCCAGCCGTCAAGA
AGATATCAGTGTCGATGCCTGTTTCCTCAACTTCACGTCAACAAGCAACC
TTTGCTTGCTGCAATTGTTCAGAGTTTTAATCATCATGGTAATATTGCTA
ACATATCAACCAGTCTCAAGTCTTCTTCATTGGTTCAGGAGATTGTTATC
AGCGAAGATGGTTCCACGGATGGCTCTTTGCATGATTGGCATGCTGCCCT
TCCTGAGCCGCACCATTTTATTATTCGTTCAAACAATCTTCACGAATTGC
GCAGTTACAATCGTGCCATGCGAATGTCCTCTGCTGATATTGTTGTGCTG
CTACAAGATGATGATTTGCTACCACCCTCTGATGAATGGTTGAAAAACGC
AATCCGATTGTTCGAAGCATTACCCGATCTAGGCGTGTTGGGCGGTTACA
TTGGACAACTTTGGGATCATAACACTGGGCAAGGATATGAGTACGGAGAA
CAAATAAGCACACATGGTGGCTTGCGTCAAGGAAATACAAAGCCATTGCC
CTTCATAGAACCGACCACCAAACTACCTTTTACGTATGCTGAATGTGTGT
GGGTCGCACCAGTATTTATCAGAAGAGAATTACTTCGAAAGGCTGGTGGA
TTGGAGCTTACCATTGCCAAACGAGGAGAACCAGGTGTTTGGCAAGATTG
TGTTTTCAGTTACGAGGCATGGATAAATGGATACACCGTGGGCGCTTATT
CAGCTCCGTTTGAACGAGGAGTGGGAGGTCATGGTTCTGCAACGTCAACA
ATCAAAGTCAAACAAAGAGAACGGGTTTATGAAAGAGCAGTGGCATATAC
TAATCGCAAGTATCCCAGAAGAAGGATACACGATTCTATAATCGCGCGAA
ACAATCAGACATTGCTGCCTCGAGCGTTTGCCAAGTAA
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