Gchil3427.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gchil3427.t1
Unique Name	Gchil3427.t1
Type	mRNA
Organism	Gracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length	547

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00004378_pilon	contig	tig00004378_pilon:52190..53830 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria chilensis NLEC103_M9 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	9823.ENSSSCP00000004806
Preferred name	PGM3
PFAMs	PGM_PMM_I,PGM_PMM_III,PGM_PMM_IV
Max annot lvl	33208\|Metazoa
KEGG rclass	RC00408
KEGG ko	ko:K01836
KEGG Reaction	R08193
KEGG Pathway	ko00520,ko01100,ko01130,map00520,map01100,map01130
GOs	GO:0000003,GO:0001704,GO:0001707,GO:0002376,GO:0002520,GO:0003674,GO:0003824,GO:0004610,GO:0004614,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006040,GO:0006041,GO:0006047,GO:0006048,GO:0006139,GO:0006464,GO:0006486,GO:0006487,GO:0006493,GO:0006725,GO:0006793,GO:0006796,GO:0006807,GO:0007275,GO:0007276,GO:0007283,GO:0007369,GO:0007498,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009100,GO:0009101,GO:0009225,GO:0009226,GO:0009653,GO:0009790,GO:0009888,GO:0009966,GO:0009967,GO:0009987,GO:0010646,GO:0010647,GO:0016853,GO:0016866,GO:0016868,GO:0018130,GO:0019255,GO:0019438,GO:0019538,GO:0019637,GO:0019953,GO:0022414,GO:0023051,GO:0023056,GO:0030097,GO:0032501,GO:0032502,GO:0032504,GO:0034641,GO:0034645,GO:0034654,GO:0036211,GO:0040036,GO:0043170,GO:0043412,GO:0043413,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044281,GO:0044424,GO:0044444,GO:0044464,GO:0044703,GO:0045743,GO:0046349,GO:0046483,GO:0048232,GO:0048332,GO:0048513,GO:0048518,GO:0048522,GO:0048534,GO:0048583,GO:0048584,GO:0048598,GO:0048609,GO:0048646,GO:0048729,GO:0048731,GO:0048856,GO:0050789,GO:0050794,GO:0051704,GO:0055086,GO:0060438,GO:0060541,GO:0065007,GO:0070085,GO:0071704,GO:0090287,GO:1901071,GO:1901135,GO:1901137,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576
Evalue	7.63e-113
EggNOG OGs	COG1109@1\|root,KOG2537@2759\|Eukaryota,38CHB@33154\|Opisthokonta,3BFTW@33208\|Metazoa,3CRUW@33213\|Bilateria,488ZQ@7711\|Chordata,48W1U@7742\|Vertebrata,3J78P@40674\|Mammalia,4J43J@91561\|Cetartiodactyla
EC	5.4.2.3
Description	Catalyzes the conversion of GlcNAc-6-P into GlcNAc-1-P during the synthesis of uridine diphosphate UDP-GlcNAc, a sugar nucleotide critical to multiple glycosylation pathways including protein N- and O-glycosylation
COG category	G
BRITE	ko00000,ko00001,ko01000

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gchil3427	Gchil3427	Gracilaria chilensis NLEC103_M9 male	gene	tig00004378_pilon 52190..53830 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil3427.t1.start1	Gchil3427.t1.start1	Gracilaria chilensis NLEC103_M9 male	start_codon	tig00004378_pilon 52190..52192 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil3427.t1.CDS1	Gchil3427.t1.CDS1	Gracilaria chilensis NLEC103_M9 male	CDS	tig00004378_pilon 52190..53830 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil3427.t1.exon1	Gchil3427.t1.exon1	Gracilaria chilensis NLEC103_M9 male	exon	tig00004378_pilon 52190..53830 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil3427.t1.stop1	Gchil3427.t1.stop1	Gracilaria chilensis NLEC103_M9 male	stop_codon	tig00004378_pilon 53828..53830 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil3427.t1	Gchil3427.t1	Gracilaria chilensis NLEC103_M9 male	polypeptide	tig00004378_pilon 52190..53830 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00004378_pilon:52190..53830+
coding sequence from alignment at tig00004378_pilon:52190..53830+

mRNA sequence

>Gchil3427.t1 ID=Gchil3427.t1|Name=Gchil3427.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=547bp
MQFSKPNLELTASSDLDSLLGHRHHPAYLSYGTAGFRGLATNLYEAVLRC
GVLAACRSHVVGGEAVGVMVTASHNPPDDNGLKLVEPDGSMLNPDWEQLA
TEFVNASHHPTRTLQNFVSVDDVAITRRAIVVVGRDSRDSSTTLVDLVVQ
GVEAVGGRVIRIGLVTTPQLHFSVRARHRGDPCNIIHYNDKLQKSYVDLT
RNKRFSAPIGVDCANGVGAIAVKGLKGLSLNLFAVNKPGDGPLNHECGAD
FVQKKRRPPVIYSGGDKVADIWASLDGDADRLVMYQNSERGFVLADGDRF
AALLAMFVSKHLAASGMSTLTVAVAQTAYSNGAATQYLETLSGVEIVIAK
TGVKHLEKAVRLYDIGIYWEPNGHGTVLFSENAITELKKVASDSAGYVRN
AHQLDSISTLLAVSRLANQAVGDGMADLLLVCGILCKEDMTFDTWLQLYD
ERCSSNMIVHVKDKSIIVTEDCDRTVKKPNALRTSITEITSRKGCRGFVR
PSGTEDVVRVYTEAPVGGEQLAKEMALRISQSVYDNCGGVGTRPLL*

spliced messenger RNA

>Gchil3427.t1 ID=Gchil3427.t1|Name=Gchil3427.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1641bp|location=Sequence derived from alignment at tig00004378_pilon:52190..53830+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCAGTTCTCTAAACCGAACCTGGAGCTCACAGCTTCGTCGGACCTTGA
TAGTCTTCTTGGTCACCGCCACCACCCAGCCTATCTCAGCTATGGCACTG
CTGGGTTCCGTGGTCTAGCGACTAATCTCTATGAAGCCGTGCTCCGATGC
GGAGTTTTGGCAGCATGCAGATCGCATGTAGTTGGAGGAGAGGCCGTCGG
TGTGATGGTTACAGCTTCTCACAATCCGCCTGATGATAATGGTTTGAAGC
TCGTTGAACCAGACGGCTCTATGCTAAATCCTGATTGGGAACAACTGGCG
ACTGAATTCGTCAATGCTTCGCATCACCCTACGCGCACGTTGCAGAATTT
TGTTTCAGTTGATGATGTTGCAATCACACGAAGGGCTATTGTGGTAGTGG
GTCGCGATTCTCGTGATAGTTCCACCACTCTTGTCGACCTGGTCGTGCAA
GGAGTTGAGGCCGTGGGTGGTCGAGTAATCCGCATAGGTCTTGTTACAAC
TCCTCAGTTACACTTTTCAGTGCGCGCTCGTCATCGCGGCGATCCATGCA
ATATAATTCATTACAACGACAAGCTGCAGAAATCGTACGTTGATCTGACG
CGAAACAAGCGTTTCTCAGCTCCAATTGGCGTGGACTGTGCGAATGGTGT
TGGTGCAATCGCTGTTAAAGGTCTCAAGGGTCTTTCACTAAACCTCTTCG
CGGTAAACAAACCAGGAGACGGGCCTCTCAATCACGAATGTGGGGCCGAC
TTCGTACAAAAGAAGCGCCGCCCCCCGGTTATCTATTCTGGCGGTGATAA
AGTTGCCGACATCTGGGCATCACTTGACGGAGATGCGGATCGTCTCGTCA
TGTATCAGAATAGCGAGCGGGGCTTTGTTCTCGCGGACGGTGATCGCTTC
GCGGCGCTCCTCGCAATGTTTGTTTCGAAACATCTAGCTGCATCTGGCAT
GTCGACACTGACAGTCGCTGTCGCACAAACGGCTTACTCAAACGGGGCTG
CTACGCAGTATCTCGAAACTCTTTCTGGGGTGGAGATAGTAATAGCGAAG
ACAGGAGTCAAACACTTGGAGAAAGCGGTGAGATTGTATGACATTGGAAT
ATATTGGGAGCCAAATGGTCACGGAACGGTTCTCTTCAGCGAAAACGCGA
TTACAGAACTTAAAAAAGTGGCAAGCGATTCGGCCGGCTATGTTCGAAAT
GCCCACCAGTTGGATAGCATATCCACTCTTCTTGCCGTAAGCAGACTGGC
TAACCAAGCGGTAGGTGACGGTATGGCTGATTTGTTGCTAGTTTGCGGTA
TTCTATGTAAGGAGGACATGACTTTTGATACTTGGTTACAACTATATGAC
GAGCGATGTAGTAGCAACATGATTGTTCATGTCAAGGACAAAAGCATAAT
CGTGACAGAGGATTGCGATCGAACTGTGAAGAAACCAAATGCATTGCGAA
CATCAATTACAGAAATCACCTCCAGAAAAGGGTGTAGGGGCTTTGTTCGA
CCAAGTGGTACGGAAGACGTGGTTCGAGTTTACACTGAGGCGCCAGTTGG
AGGAGAGCAACTGGCGAAAGAAATGGCATTAAGAATCAGTCAATCAGTTT
ATGACAACTGTGGGGGGGTTGGGACAAGACCGCTGTTGTGA

protein sequence of Gchil3427.t1

>Gchil3427.t1 ID=Gchil3427.t1|Name=Gchil3427.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=547bp
MQFSKPNLELTASSDLDSLLGHRHHPAYLSYGTAGFRGLATNLYEAVLRC
GVLAACRSHVVGGEAVGVMVTASHNPPDDNGLKLVEPDGSMLNPDWEQLA
TEFVNASHHPTRTLQNFVSVDDVAITRRAIVVVGRDSRDSSTTLVDLVVQ
GVEAVGGRVIRIGLVTTPQLHFSVRARHRGDPCNIIHYNDKLQKSYVDLT
RNKRFSAPIGVDCANGVGAIAVKGLKGLSLNLFAVNKPGDGPLNHECGAD
FVQKKRRPPVIYSGGDKVADIWASLDGDADRLVMYQNSERGFVLADGDRF
AALLAMFVSKHLAASGMSTLTVAVAQTAYSNGAATQYLETLSGVEIVIAK
TGVKHLEKAVRLYDIGIYWEPNGHGTVLFSENAITELKKVASDSAGYVRN
AHQLDSISTLLAVSRLANQAVGDGMADLLLVCGILCKEDMTFDTWLQLYD
ERCSSNMIVHVKDKSIIVTEDCDRTVKKPNALRTSITEITSRKGCRGFVR
PSGTEDVVRVYTEAPVGGEQLAKEMALRISQSVYDNCGGVGTRPLL*

mRNA from alignment at tig00004378_pilon:52190..53830+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gchil3427.t1 ID=Gchil3427.t1|Name=Gchil3427.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1641bp|location=Sequence derived from alignment at tig00004378_pilon:52190..53830+ (Gracilaria chilensis NLEC103_M9 male)
ATGCAGTTCTCTAAACCGAACCTGGAGCTCACAGCTTCGTCGGACCTTGA
TAGTCTTCTTGGTCACCGCCACCACCCAGCCTATCTCAGCTATGGCACTG
CTGGGTTCCGTGGTCTAGCGACTAATCTCTATGAAGCCGTGCTCCGATGC
GGAGTTTTGGCAGCATGCAGATCGCATGTAGTTGGAGGAGAGGCCGTCGG
TGTGATGGTTACAGCTTCTCACAATCCGCCTGATGATAATGGTTTGAAGC
TCGTTGAACCAGACGGCTCTATGCTAAATCCTGATTGGGAACAACTGGCG
ACTGAATTCGTCAATGCTTCGCATCACCCTACGCGCACGTTGCAGAATTT
TGTTTCAGTTGATGATGTTGCAATCACACGAAGGGCTATTGTGGTAGTGG
GTCGCGATTCTCGTGATAGTTCCACCACTCTTGTCGACCTGGTCGTGCAA
GGAGTTGAGGCCGTGGGTGGTCGAGTAATCCGCATAGGTCTTGTTACAAC
TCCTCAGTTACACTTTTCAGTGCGCGCTCGTCATCGCGGCGATCCATGCA
ATATAATTCATTACAACGACAAGCTGCAGAAATCGTACGTTGATCTGACG
CGAAACAAGCGTTTCTCAGCTCCAATTGGCGTGGACTGTGCGAATGGTGT
TGGTGCAATCGCTGTTAAAGGTCTCAAGGGTCTTTCACTAAACCTCTTCG
CGGTAAACAAACCAGGAGACGGGCCTCTCAATCACGAATGTGGGGCCGAC
TTCGTACAAAAGAAGCGCCGCCCCCCGGTTATCTATTCTGGCGGTGATAA
AGTTGCCGACATCTGGGCATCACTTGACGGAGATGCGGATCGTCTCGTCA
TGTATCAGAATAGCGAGCGGGGCTTTGTTCTCGCGGACGGTGATCGCTTC
GCGGCGCTCCTCGCAATGTTTGTTTCGAAACATCTAGCTGCATCTGGCAT
GTCGACACTGACAGTCGCTGTCGCACAAACGGCTTACTCAAACGGGGCTG
CTACGCAGTATCTCGAAACTCTTTCTGGGGTGGAGATAGTAATAGCGAAG
ACAGGAGTCAAACACTTGGAGAAAGCGGTGAGATTGTATGACATTGGAAT
ATATTGGGAGCCAAATGGTCACGGAACGGTTCTCTTCAGCGAAAACGCGA
TTACAGAACTTAAAAAAGTGGCAAGCGATTCGGCCGGCTATGTTCGAAAT
GCCCACCAGTTGGATAGCATATCCACTCTTCTTGCCGTAAGCAGACTGGC
TAACCAAGCGGTAGGTGACGGTATGGCTGATTTGTTGCTAGTTTGCGGTA
TTCTATGTAAGGAGGACATGACTTTTGATACTTGGTTACAACTATATGAC
GAGCGATGTAGTAGCAACATGATTGTTCATGTCAAGGACAAAAGCATAAT
CGTGACAGAGGATTGCGATCGAACTGTGAAGAAACCAAATGCATTGCGAA
CATCAATTACAGAAATCACCTCCAGAAAAGGGTGTAGGGGCTTTGTTCGA
CCAAGTGGTACGGAAGACGTGGTTCGAGTTTACACTGAGGCGCCAGTTGG
AGGAGAGCAACTGGCGAAAGAAATGGCATTAAGAATCAGTCAATCAGTTT
ATGACAACTGTGGGGGGGTTGGGACAAGACCGCTGTTGTGA

Coding sequence (CDS) from alignment at tig00004378_pilon:52190..53830+

>Gchil3427.t1 ID=Gchil3427.t1|Name=Gchil3427.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1641bp|location=Sequence derived from alignment at tig00004378_pilon:52190..53830+ (Gracilaria chilensis NLEC103_M9 male)
ATGCAGTTCTCTAAACCGAACCTGGAGCTCACAGCTTCGTCGGACCTTGA
TAGTCTTCTTGGTCACCGCCACCACCCAGCCTATCTCAGCTATGGCACTG
CTGGGTTCCGTGGTCTAGCGACTAATCTCTATGAAGCCGTGCTCCGATGC
GGAGTTTTGGCAGCATGCAGATCGCATGTAGTTGGAGGAGAGGCCGTCGG
TGTGATGGTTACAGCTTCTCACAATCCGCCTGATGATAATGGTTTGAAGC
TCGTTGAACCAGACGGCTCTATGCTAAATCCTGATTGGGAACAACTGGCG
ACTGAATTCGTCAATGCTTCGCATCACCCTACGCGCACGTTGCAGAATTT
TGTTTCAGTTGATGATGTTGCAATCACACGAAGGGCTATTGTGGTAGTGG
GTCGCGATTCTCGTGATAGTTCCACCACTCTTGTCGACCTGGTCGTGCAA
GGAGTTGAGGCCGTGGGTGGTCGAGTAATCCGCATAGGTCTTGTTACAAC
TCCTCAGTTACACTTTTCAGTGCGCGCTCGTCATCGCGGCGATCCATGCA
ATATAATTCATTACAACGACAAGCTGCAGAAATCGTACGTTGATCTGACG
CGAAACAAGCGTTTCTCAGCTCCAATTGGCGTGGACTGTGCGAATGGTGT
TGGTGCAATCGCTGTTAAAGGTCTCAAGGGTCTTTCACTAAACCTCTTCG
CGGTAAACAAACCAGGAGACGGGCCTCTCAATCACGAATGTGGGGCCGAC
TTCGTACAAAAGAAGCGCCGCCCCCCGGTTATCTATTCTGGCGGTGATAA
AGTTGCCGACATCTGGGCATCACTTGACGGAGATGCGGATCGTCTCGTCA
TGTATCAGAATAGCGAGCGGGGCTTTGTTCTCGCGGACGGTGATCGCTTC
GCGGCGCTCCTCGCAATGTTTGTTTCGAAACATCTAGCTGCATCTGGCAT
GTCGACACTGACAGTCGCTGTCGCACAAACGGCTTACTCAAACGGGGCTG
CTACGCAGTATCTCGAAACTCTTTCTGGGGTGGAGATAGTAATAGCGAAG
ACAGGAGTCAAACACTTGGAGAAAGCGGTGAGATTGTATGACATTGGAAT
ATATTGGGAGCCAAATGGTCACGGAACGGTTCTCTTCAGCGAAAACGCGA
TTACAGAACTTAAAAAAGTGGCAAGCGATTCGGCCGGCTATGTTCGAAAT
GCCCACCAGTTGGATAGCATATCCACTCTTCTTGCCGTAAGCAGACTGGC
TAACCAAGCGGTAGGTGACGGTATGGCTGATTTGTTGCTAGTTTGCGGTA
TTCTATGTAAGGAGGACATGACTTTTGATACTTGGTTACAACTATATGAC
GAGCGATGTAGTAGCAACATGATTGTTCATGTCAAGGACAAAAGCATAAT
CGTGACAGAGGATTGCGATCGAACTGTGAAGAAACCAAATGCATTGCGAA
CATCAATTACAGAAATCACCTCCAGAAAAGGGTGTAGGGGCTTTGTTCGA
CCAAGTGGTACGGAAGACGTGGTTCGAGTTTACACTGAGGCGCCAGTTGG
AGGAGAGCAACTGGCGAAAGAAATGGCATTAAGAATCAGTCAATCAGTTT
ATGACAACTGTGGGGGGGTTGGGACAAGACCGCTGTTGTGA