Gchil3426.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil3426.t1
Unique NameGchil3426.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length353
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004378_piloncontigtig00004378_pilon:49504..50562 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005702977.1
PFAMsAminotran_1_2
Max annot lvl2759|Eukaryota
Evalue1.82e-143
EggNOG OGsCOG0079@1|root,KOG0633@2759|Eukaryota
Descriptionhistidinol-phosphate transaminase activity
COG categoryE
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil3426Gchil3426Gracilaria chilensis NLEC103_M9 malegenetig00004378_pilon 49504..50562 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3426.t1.start1Gchil3426.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004378_pilon 49504..49506 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3426.t1.CDS1Gchil3426.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004378_pilon 49504..50562 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3426.t1.exon1Gchil3426.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004378_pilon 49504..50562 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3426.t1.stop1Gchil3426.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004378_pilon 50560..50562 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3426.t1Gchil3426.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004378_pilon 49504..50562 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil3426.t1 ID=Gchil3426.t1|Name=Gchil3426.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=353bp
MDKVWDTETQEVHGGQTWRQCPNYTADFSVTTNALGTPASATVAAVRSVV
EDIHHYPAADTREALEALSTFTHWPVDRLLIGNGASEFIDLVMKVLPFGP
FKPGPYKAAYMEYNRAAIAAGRTVLSAFSEDPAAVTVLIHPNSPTGDFMS
LDAIRSMMDTTTGSLVIDESFMPFLGPDWHKHSALSLIDEYPDRLFVLAS
WTKLWACPGIRLGSIAASRDWIKRIKKMQTPWSCNSPAQAFMTAACNDMN
YMKETWEILPEWRRLTEQRVRHLDWRVNEKSPIWVPWVFATLPDAKMAER
ASQSAQAAGCPVRLCTSFGVPECLRIGIRKPEHQKVLFKAWEIEFSIKSF
LK*
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spliced messenger RNA

>Gchil3426.t1 ID=Gchil3426.t1|Name=Gchil3426.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1059bp|location=Sequence derived from alignment at tig00004378_pilon:49504..50562+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGATAAAGTTTGGGATACTGAGACGCAGGAAGTCCATGGCGGTCAGAC
ATGGCGTCAGTGCCCAAACTACACGGCTGACTTCTCGGTGACGACTAACG
CTCTGGGAACCCCCGCTTCGGCAACAGTCGCGGCCGTACGCTCCGTCGTC
GAAGACATTCATCATTATCCTGCAGCCGACACTCGAGAAGCTCTAGAAGC
TCTTTCCACATTCACACACTGGCCTGTAGACCGTCTTCTCATAGGCAATG
GAGCCTCCGAATTTATTGACCTCGTCATGAAGGTCTTGCCGTTTGGTCCC
TTCAAACCGGGTCCCTACAAAGCAGCGTATATGGAGTACAACCGTGCTGC
GATAGCCGCCGGTCGCACCGTCTTGTCTGCCTTCTCAGAGGATCCGGCTG
CCGTCACCGTGCTCATTCATCCAAACTCTCCTACAGGTGACTTCATGTCC
TTAGACGCAATTCGCTCAATGATGGATACAACAACCGGTTCTCTTGTCAT
TGACGAGTCCTTTATGCCATTTTTAGGGCCTGATTGGCATAAACACTCAG
CATTATCTCTCATAGATGAATATCCGGACAGACTATTCGTGCTGGCGTCC
TGGACCAAGCTGTGGGCATGCCCTGGTATCCGACTGGGCTCTATTGCCGC
CTCTCGCGACTGGATCAAACGTATCAAGAAAATGCAAACACCATGGTCCT
GCAACTCACCGGCGCAAGCATTTATGACTGCAGCATGCAATGACATGAAT
TACATGAAGGAAACATGGGAAATATTGCCAGAATGGAGACGTTTGACGGA
GCAAAGAGTCAGACACTTGGATTGGAGAGTCAATGAAAAAAGTCCTATCT
GGGTACCATGGGTTTTCGCTACTTTGCCAGATGCAAAGATGGCGGAGAGA
GCCTCTCAATCTGCTCAGGCTGCAGGCTGTCCTGTTCGACTGTGTACCAG
CTTTGGAGTTCCTGAATGTCTTCGCATCGGTATCAGAAAACCTGAACACC
AGAAGGTGCTGTTTAAGGCCTGGGAGATCGAATTCAGTATCAAAAGCTTT
CTAAAATGA
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protein sequence of Gchil3426.t1

>Gchil3426.t1 ID=Gchil3426.t1|Name=Gchil3426.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=353bp
MDKVWDTETQEVHGGQTWRQCPNYTADFSVTTNALGTPASATVAAVRSVV
EDIHHYPAADTREALEALSTFTHWPVDRLLIGNGASEFIDLVMKVLPFGP
FKPGPYKAAYMEYNRAAIAAGRTVLSAFSEDPAAVTVLIHPNSPTGDFMS
LDAIRSMMDTTTGSLVIDESFMPFLGPDWHKHSALSLIDEYPDRLFVLAS
WTKLWACPGIRLGSIAASRDWIKRIKKMQTPWSCNSPAQAFMTAACNDMN
YMKETWEILPEWRRLTEQRVRHLDWRVNEKSPIWVPWVFATLPDAKMAER
ASQSAQAAGCPVRLCTSFGVPECLRIGIRKPEHQKVLFKAWEIEFSIKSF
LK*
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mRNA from alignment at tig00004378_pilon:49504..50562+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil3426.t1 ID=Gchil3426.t1|Name=Gchil3426.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1059bp|location=Sequence derived from alignment at tig00004378_pilon:49504..50562+ (Gracilaria chilensis NLEC103_M9 male)
ATGGATAAAGTTTGGGATACTGAGACGCAGGAAGTCCATGGCGGTCAGAC
ATGGCGTCAGTGCCCAAACTACACGGCTGACTTCTCGGTGACGACTAACG
CTCTGGGAACCCCCGCTTCGGCAACAGTCGCGGCCGTACGCTCCGTCGTC
GAAGACATTCATCATTATCCTGCAGCCGACACTCGAGAAGCTCTAGAAGC
TCTTTCCACATTCACACACTGGCCTGTAGACCGTCTTCTCATAGGCAATG
GAGCCTCCGAATTTATTGACCTCGTCATGAAGGTCTTGCCGTTTGGTCCC
TTCAAACCGGGTCCCTACAAAGCAGCGTATATGGAGTACAACCGTGCTGC
GATAGCCGCCGGTCGCACCGTCTTGTCTGCCTTCTCAGAGGATCCGGCTG
CCGTCACCGTGCTCATTCATCCAAACTCTCCTACAGGTGACTTCATGTCC
TTAGACGCAATTCGCTCAATGATGGATACAACAACCGGTTCTCTTGTCAT
TGACGAGTCCTTTATGCCATTTTTAGGGCCTGATTGGCATAAACACTCAG
CATTATCTCTCATAGATGAATATCCGGACAGACTATTCGTGCTGGCGTCC
TGGACCAAGCTGTGGGCATGCCCTGGTATCCGACTGGGCTCTATTGCCGC
CTCTCGCGACTGGATCAAACGTATCAAGAAAATGCAAACACCATGGTCCT
GCAACTCACCGGCGCAAGCATTTATGACTGCAGCATGCAATGACATGAAT
TACATGAAGGAAACATGGGAAATATTGCCAGAATGGAGACGTTTGACGGA
GCAAAGAGTCAGACACTTGGATTGGAGAGTCAATGAAAAAAGTCCTATCT
GGGTACCATGGGTTTTCGCTACTTTGCCAGATGCAAAGATGGCGGAGAGA
GCCTCTCAATCTGCTCAGGCTGCAGGCTGTCCTGTTCGACTGTGTACCAG
CTTTGGAGTTCCTGAATGTCTTCGCATCGGTATCAGAAAACCTGAACACC
AGAAGGTGCTGTTTAAGGCCTGGGAGATCGAATTCAGTATCAAAAGCTTT
CTAAAATGA
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Coding sequence (CDS) from alignment at tig00004378_pilon:49504..50562+

>Gchil3426.t1 ID=Gchil3426.t1|Name=Gchil3426.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1059bp|location=Sequence derived from alignment at tig00004378_pilon:49504..50562+ (Gracilaria chilensis NLEC103_M9 male)
ATGGATAAAGTTTGGGATACTGAGACGCAGGAAGTCCATGGCGGTCAGAC
ATGGCGTCAGTGCCCAAACTACACGGCTGACTTCTCGGTGACGACTAACG
CTCTGGGAACCCCCGCTTCGGCAACAGTCGCGGCCGTACGCTCCGTCGTC
GAAGACATTCATCATTATCCTGCAGCCGACACTCGAGAAGCTCTAGAAGC
TCTTTCCACATTCACACACTGGCCTGTAGACCGTCTTCTCATAGGCAATG
GAGCCTCCGAATTTATTGACCTCGTCATGAAGGTCTTGCCGTTTGGTCCC
TTCAAACCGGGTCCCTACAAAGCAGCGTATATGGAGTACAACCGTGCTGC
GATAGCCGCCGGTCGCACCGTCTTGTCTGCCTTCTCAGAGGATCCGGCTG
CCGTCACCGTGCTCATTCATCCAAACTCTCCTACAGGTGACTTCATGTCC
TTAGACGCAATTCGCTCAATGATGGATACAACAACCGGTTCTCTTGTCAT
TGACGAGTCCTTTATGCCATTTTTAGGGCCTGATTGGCATAAACACTCAG
CATTATCTCTCATAGATGAATATCCGGACAGACTATTCGTGCTGGCGTCC
TGGACCAAGCTGTGGGCATGCCCTGGTATCCGACTGGGCTCTATTGCCGC
CTCTCGCGACTGGATCAAACGTATCAAGAAAATGCAAACACCATGGTCCT
GCAACTCACCGGCGCAAGCATTTATGACTGCAGCATGCAATGACATGAAT
TACATGAAGGAAACATGGGAAATATTGCCAGAATGGAGACGTTTGACGGA
GCAAAGAGTCAGACACTTGGATTGGAGAGTCAATGAAAAAAGTCCTATCT
GGGTACCATGGGTTTTCGCTACTTTGCCAGATGCAAAGATGGCGGAGAGA
GCCTCTCAATCTGCTCAGGCTGCAGGCTGTCCTGTTCGACTGTGTACCAG
CTTTGGAGTTCCTGAATGTCTTCGCATCGGTATCAGAAAACCTGAACACC
AGAAGGTGCTGTTTAAGGCCTGGGAGATCGAATTCAGTATCAAAAGCTTT
CTAAAATGA
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