Gchil3410.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil3410.t1
Unique NameGchil3410.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length127
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000168_piloncontigtig00000168_pilon:1009964..1010344 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005705436.1
PFAMsHistone
Max annot lvl2759|Eukaryota
KEGG koko:K11252
KEGG Pathwayko05034,ko05203,ko05322,map05034,map05203,map05322
GOsGO:0000228,GO:0000785,GO:0000786,GO:0000788,GO:0000790,GO:0003674,GO:0003676,GO:0003677,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005657,GO:0005694,GO:0006325,GO:0006333,GO:0006996,GO:0008150,GO:0009987,GO:0016043,GO:0031298,GO:0031974,GO:0031981,GO:0032991,GO:0032993,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043596,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044446,GO:0044454,GO:0044464,GO:0044815,GO:0051276,GO:0070013,GO:0071840,GO:0097159,GO:1901363
Evalue2.07e-54
EggNOG OGsKOG1744@1|root,KOG1744@2759|Eukaryota
Descriptionprotein heterodimerization activity
COG categoryB
BRITEko00000,ko00001,ko03036,ko04147
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil3410Gchil3410Gracilaria chilensis NLEC103_M9 malegenetig00000168_pilon 1009964..1010344 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3410.t1.stop1Gchil3410.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00000168_pilon 1009964..1009966 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3410.t1.CDS1Gchil3410.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00000168_pilon 1009964..1010344 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3410.t1.exon1Gchil3410.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00000168_pilon 1009964..1010344 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3410.t1.start1Gchil3410.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00000168_pilon 1010342..1010344 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3410.t1Gchil3410.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00000168_pilon 1009964..1010344 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil3410.t1 ID=Gchil3410.t1|Name=Gchil3410.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=127bp
MPKGGGKSVPVAEKKVAKKGISGGGVEKTTRKKKRSESYSIYIYKVLKQV
HPDTGISSKAMSIMNSFVADLFERIATEAAKLASYNNTKTLTSREIQTAV
RLLLPGELAKHAVSEGTKAVTKYSSS*
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spliced messenger RNA

>Gchil3410.t1 ID=Gchil3410.t1|Name=Gchil3410.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=381bp|location=Sequence derived from alignment at tig00000168_pilon:1009964..1010344- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCCGAAAGGAGGAGGAAAGAGCGTGCCCGTCGCCGAGAAGAAGGTTGC
CAAGAAAGGAATCTCAGGCGGCGGCGTCGAGAAGACAACCCGCAAGAAGA
AGAGAAGCGAATCTTATTCCATCTACATCTACAAGGTTTTGAAGCAAGTC
CATCCAGATACTGGTATTTCATCCAAAGCCATGAGCATCATGAACTCATT
TGTTGCTGATCTCTTCGAGCGTATTGCAACTGAGGCAGCCAAGCTTGCTT
CGTACAACAACACCAAGACCCTGACCTCCCGAGAAATCCAAACAGCTGTT
CGTCTCTTACTTCCTGGTGAACTGGCGAAACACGCAGTTTCGGAAGGTAC
AAAGGCCGTGACCAAGTACAGTTCTTCGTAA
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protein sequence of Gchil3410.t1

>Gchil3410.t1 ID=Gchil3410.t1|Name=Gchil3410.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=127bp
MPKGGGKSVPVAEKKVAKKGISGGGVEKTTRKKKRSESYSIYIYKVLKQV
HPDTGISSKAMSIMNSFVADLFERIATEAAKLASYNNTKTLTSREIQTAV
RLLLPGELAKHAVSEGTKAVTKYSSS*
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mRNA from alignment at tig00000168_pilon:1009964..1010344-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil3410.t1 ID=Gchil3410.t1|Name=Gchil3410.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=381bp|location=Sequence derived from alignment at tig00000168_pilon:1009964..1010344- (Gracilaria chilensis NLEC103_M9 male)
ATGCCGAAAGGAGGAGGAAAGAGCGTGCCCGTCGCCGAGAAGAAGGTTGC
CAAGAAAGGAATCTCAGGCGGCGGCGTCGAGAAGACAACCCGCAAGAAGA
AGAGAAGCGAATCTTATTCCATCTACATCTACAAGGTTTTGAAGCAAGTC
CATCCAGATACTGGTATTTCATCCAAAGCCATGAGCATCATGAACTCATT
TGTTGCTGATCTCTTCGAGCGTATTGCAACTGAGGCAGCCAAGCTTGCTT
CGTACAACAACACCAAGACCCTGACCTCCCGAGAAATCCAAACAGCTGTT
CGTCTCTTACTTCCTGGTGAACTGGCGAAACACGCAGTTTCGGAAGGTAC
AAAGGCCGTGACCAAGTACAGTTCTTCGTAA
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Coding sequence (CDS) from alignment at tig00000168_pilon:1009964..1010344-

>Gchil3410.t1 ID=Gchil3410.t1|Name=Gchil3410.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=381bp|location=Sequence derived from alignment at tig00000168_pilon:1009964..1010344- (Gracilaria chilensis NLEC103_M9 male)
ATGCCGAAAGGAGGAGGAAAGAGCGTGCCCGTCGCCGAGAAGAAGGTTGC
CAAGAAAGGAATCTCAGGCGGCGGCGTCGAGAAGACAACCCGCAAGAAGA
AGAGAAGCGAATCTTATTCCATCTACATCTACAAGGTTTTGAAGCAAGTC
CATCCAGATACTGGTATTTCATCCAAAGCCATGAGCATCATGAACTCATT
TGTTGCTGATCTCTTCGAGCGTATTGCAACTGAGGCAGCCAAGCTTGCTT
CGTACAACAACACCAAGACCCTGACCTCCCGAGAAATCCAAACAGCTGTT
CGTCTCTTACTTCCTGGTGAACTGGCGAAACACGCAGTTTCGGAAGGTAC
AAAGGCCGTGACCAAGTACAGTTCTTCGTAA
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